View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_12 (Length: 620)
Name: NF8910_low_12
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 24 - 603
Target Start/End: Complemental strand, 41745771 - 41745191
Alignment:
| Q |
24 |
gtcattagttccattggcattgcaaagtagcagtactagcatcattaggaacaggtcatcttcattgcaatttgatgatataaagaaacattttgatgtt |
123 |
Q |
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| T |
41745771 |
gtcattagttccattggcattgcaaagtagcagtactagcatcattaggaagaggtcatcttcattgcaatttgatgatataaagaaacattttgatgtt |
41745672 |
T |
|
| Q |
124 |
cctataacaatggctgctaagaaactgaatgttggtgtgacctttttgaagaaaagatgcagggagctcaacatcaccaggtggcctcacagaaaattga |
223 |
Q |
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| T |
41745671 |
cctataacaatggctgctaagaaactgaatgttggtgtgacctttttgaagaaaagatgcagggagctcaacatcactaggtggcctcacagaaaattga |
41745572 |
T |
|
| Q |
224 |
ggagtttgatgttactcatcgacaaccttaaggtatattctatgttgtttgactactctgccccacattttcaagtacatgaaaaataacattactcatt |
323 |
Q |
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| T |
41745571 |
ggagtttgatgttactcatcgacaaccttaaggtatattctatgttgtttgactactctgccccacattttcaagtacatgaaaaataacattactcatt |
41745472 |
T |
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| Q |
324 |
tttatttgtaccttagactaagtttttggtccataacccgccgcgaatgataattagaaacataatatatagttgtctattatgtgtcattagctatgaa |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41745471 |
tttatttgtaccttagactaagtttttggtccataacccgccgggaatgataattagaaacataatatatagttgtctattatgtgtcattagctatgaa |
41745372 |
T |
|
| Q |
424 |
acacg-acaactctagaattagatgtgtcgcgatgtcttatatttagtatgacactctcacaacgtggttaaatatctcatacaaatccttnnnnnnnnn |
522 |
Q |
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| T |
41745371 |
acacgtaaaactcttgaattagatgtgtcgcgatgtcctatatttagtatgatactctcacaacgtggttaaatatctcatacaaatctttaaaaaaaaa |
41745272 |
T |
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| Q |
523 |
ntctttgtttcaacacttcttaaattggtgtctgatgtgtcacacaatcgaagacaagtgtttcaaaatattttgtttttt |
603 |
Q |
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| T |
41745271 |
ttctttgtttcaacacttcttaaattggtgtctgacgcgtcacacaatcgaagacaagtgtttcaaaatattttatttttt |
41745191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 23 - 256
Target Start/End: Original strand, 29589694 - 29589927
Alignment:
| Q |
23 |
tgtcattagttccattggcattgcaaagtagcagtactagcatcattaggaacaggtcatcttcattgcaatttgatgatataaagaaacattttgatgt |
122 |
Q |
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|||||||||||||||||||||||| ||| ||||| ||| ||||||||||||| ||||||||||||||||| | |||||| |||||||||||||||||||| |
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| T |
29589694 |
tgtcattagttccattggcattgccaagcagcagcactggcatcattaggaagaggtcatcttcattgcagtatgatgacataaagaaacattttgatgt |
29589793 |
T |
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| Q |
123 |
tcctataacaatggctgctaagaaactgaatgttggtgtgacctttttgaagaaaagatgcagggagctcaacatcaccaggtggcctcacagaaaattg |
222 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
29589794 |
tcctataacaatggctgctgagaaaatgaatgttggtgtgacccttttgaaaaaaagatgcagggagctcaacatcactaggtggtctcacagaaaattg |
29589893 |
T |
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| Q |
223 |
aggagtttgatgttactcatcgacaaccttaagg |
256 |
Q |
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||||||||||||||||||||||| |||||||||| |
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| T |
29589894 |
aggagtttgatgttactcatcgagaaccttaagg |
29589927 |
T |
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