View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_15 (Length: 586)

Name: NF8910_low_15
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_15
NF8910_low_15
[»] chr2 (3 HSPs)
chr2 (18-570)||(41380657-41381212)
chr2 (248-347)||(43855153-43855252)
chr2 (304-348)||(43856685-43856729)
[»] chr6 (8 HSPs)
chr6 (248-527)||(7970273-7970554)
chr6 (248-527)||(8043155-8043435)
chr6 (248-532)||(8033219-8033503)
chr6 (18-192)||(7970590-7970764)
chr6 (18-192)||(8042945-8043119)
chr6 (18-172)||(8032967-8033118)
chr6 (248-351)||(7977223-7977326)
chr6 (422-507)||(7976908-7976993)
[»] scaffold0531 (1 HSPs)
scaffold0531 (18-158)||(2001-2138)
[»] chr7 (2 HSPs)
chr7 (283-348)||(14197281-14197346)
chr7 (420-490)||(14197141-14197211)
[»] chr8 (1 HSPs)
chr8 (432-487)||(34410575-34410630)


Alignment Details
Target: chr2 (Bit Score: 479; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Complemental strand, 41381212 - 41380657
Alignment:
Q  18 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41381212 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 41381113  T
Q  118 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41381112 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaatgactacgaatgatgtattttcttt 41381013  T
Q  218 tggttttatgtgtttgcattgnnnnnnnnncagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatt 317  Q
    |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41381012 tggttttatgtgtttgcattgtttttttt-cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatt 41380914  T
Q  318 tgcttttgctccaacaacatattttgtaagccatgagaaattgtaaacataattactaaattttcttagataatcataatcttactcatcttttcattct 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41380913 tgcttttgctccaacaacatattttgtaagccatgagaaattgtaaatataattactaaattttcttagataatcataatcttactcatcttttcattct 41380814  T
Q  418 aataaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattat 517  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41380813 attaaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattat 41380714  T
Q  518 tgcattttttctctaagnnnnnnnaataatgtta----taagcacatgtttaatatt 570  Q
    |||||||||||||||||       ||||||||||    |||||||||||||||||||    
T  41380713 tgcattttttctctaagtttttttaataatgttataattaagcacatgtttaatatt 41380657  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 248 - 347
Target Start/End: Original strand, 43855153 - 43855252
Alignment:
Q  248 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 347  Q
    ||||||| ||||||||  | | ||| ||||||||||| |||||||  ||||| ||||||||||||||||| || |||||||| |||||||||||||||||    
T  43855153 cagcattcacaatgtttgtgggcataaccttcccattctttggtgctctccttggattttttggaggattggcatttgctcccacaacatattttgtaag 43855252  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 304 - 348
Target Start/End: Complemental strand, 43856729 - 43856685
Alignment:
Q  304 ttttttggaggatttgcttttgctccaacaacatattttgtaagc 348  Q
    |||||||||||||||| |||||||||||  ||||| |||||||||    
T  43856729 ttttttggaggatttgtttttgctccaatgacatactttgtaagc 43856685  T

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Target: chr6 (Bit Score: 206; Significance: 1e-112; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 248 - 527
Target Start/End: Complemental strand, 7970554 - 7970273
Alignment:
Q  248 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 347  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||    
T  7970554 cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgcgccaacaacatattttgtaag 7970455  T
Q  348 ccatgagaaa-ttgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatg 445  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||||| ||||||||||||||||||||||||||    
T  7970454 ccatgagaaaattgtaaatataattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtatcatg 7970355  T
Q  446 tggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttttt 527  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  7970354 tggcttaaactctacaaaccaaaaagattcagcttatcttggtggattaattgggtaggtatctttaattattgtatttttt 7970273  T

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Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 248 - 527
Target Start/End: Original strand, 8043155 - 8043435
Alignment:
Q  248 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 347  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||| ||||||    
T  8043155 cagcattaacaatgttcattgccattaccttcccatttttcggtggcctcttaggattttttggaggatttgcttttgctccagcaacatattatgtaag 8043254  T
Q  348 ccatgagaaattgtaaacataattactaaattttcttag-ataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt 446  Q
    |||||||||||||||||  |||||||||||||||||||| |||||||||||||| || | |||||||||||| ||||||||||||||||||||||  |||    
T  8043255 ccatgagaaattgtaaatgtaattactaaattttcttaggataatcataatcttgcttaacttttcattctattaaattttcagcttccatgtattgtgt 8043354  T
Q  447 ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcatttttt 527  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||    
T  8043355 ggcttaaactctacaaaccaaagagattcagcttgtcttggtggattaattgggtaggcatctttaattattgtatttttt 8043435  T

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Target: chr6; HSP #3
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 248 - 532
Target Start/End: Original strand, 8033219 - 8033503
Alignment:
Q  248 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 347  Q
    ||||||| ||||||||| | || ||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||    
T  8033219 cagcattcacaatgttcattgctattacattcccatttttcggtggccttctaggattttttggaggattcgcttttgctccaacaacatattttgtaag 8033318  T
Q  348 ccatgagaaattgtaaacataattactaaattttctta-gataatcataatcttactcatcttttcattctaataaattttcagcttccatgtatcatgt 446  Q
    |||||| |||||||||| ||||| |||  ||||||||| ||| |||||||| || |||||||||||||| || || | ||||||||||||||||||||||    
T  8033319 ccatgaaaaattgtaaatataatcactggattttcttaggattatcataattttgctcatcttttcattatattaca-tttcagcttccatgtatcatgt 8033417  T
Q  447 ggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtatctttaattattgcattttttctcta 532  Q
    |||| |  || ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||  | |||||||||    
T  8033418 ggctaatcctttacaaaccaaagagattcagcttctcttggtggactaattgggtaggtatctttaattattgtttgttttctcta 8033503  T

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Target: chr6; HSP #4
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 7970764 - 7970590
Alignment:
Q  18 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 117  Q
    ||||| ||||||||||||||||||||| ||| ||||||||| ||||||||||| |||||||||||   ||||||||||||| ||||||||||||||||||    
T  7970764 aatttgatattttgattgttggtgtaggtttttgcaatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagta 7970665  T
Q  118 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa 192  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  7970664 aaatgcttcgttttattgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa 7970590  T

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Target: chr6; HSP #5
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 8042945 - 8043119
Alignment:
Q  18 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 117  Q
    ||||||||||||||||||||| ||||| ||| ||| ||||| ||||||||||| |||||||||||   ||||||||||||| ||||||||||||||||||    
T  8042945 aatttcatattttgattgttgatgtaggtttttgcgatgccagtgtttgacttgattgaaaataagtggttggtggagaaactgaatttcaaatcaagta 8043044  T
Q  118 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttggatttttaa 192  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  8043045 aaatgcttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagtgtacaactttgattttttaa 8043119  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 8032967 - 8033118
Alignment:
Q  18 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 117  Q
    |||||||||||||| || ||| ||||||||| ||||||||||||||||||| | ||||||  |   || |||||| ||||||||||||||||| ||||||    
T  8032967 aatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaatttcaaaccaagta 8033063  T
Q  118 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaagtgaaataaagtagt 172  Q
    ||||||| |||||||||| ||||||   |||||||||||||||||||||| ||||    
T  8033064 aaatcctccgttttgttgcgcgtaactcatacgtgggtaagtgaaataaaatagt 8033118  T

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Target: chr6; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 248 - 351
Target Start/End: Complemental strand, 7977326 - 7977223
Alignment:
Q  248 cagcattaacaatgttcttagccattaccttcccattttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaag 347  Q
    ||||||| ||||||||| | || ||||| ||||||||||| | |||||| || || ||||||||||| ||||||||||||||||||||||| ||||||||    
T  7977326 cagcattcacaatgttcattgctattacattcccatttttcgatggccttctagggttttttggagggtttgcttttgctccaacaacatactttgtaag 7977227  T
Q  348 ccat 351  Q
    ||||    
T  7977226 ccat 7977223  T

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Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 422 - 507
Target Start/End: Complemental strand, 7976993 - 7976908
Alignment:
Q  422 aattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtggattaattgggtaggtat 507  Q
    ||||||||||||||||||||||||||||||  | ||||||| ||||  | |||| ||||||| ||||||  |||||||||| ||||    
T  7976993 aattttcagcttccatgtatcatgtggctttcaatctacaaaccaagaaaattcggcttgtcatggtgggctaattgggtatgtat 7976908  T

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Target: scaffold0531 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 2138 - 2001
Alignment:
Q  18 aatttcatattttgattgttggtgtagatttatgcaatgccggtgtttgactttattgaaaataaagtgttggtggagaaattgaatttcaaatcaagta 117  Q
    |||||||||||||| || ||| ||||||||| ||||||||||||||||||| | ||||||  |   || |||||| ||||||||||||||||| |||||     
T  2138 aatttcatattttggtttttgttgtagatttttgcaatgccggtgtttgacatgattgaaggt---gttttggtgaagaaattgaatttcaaaccaagtg 2042  T
Q  118 aaatccttcgttttgttgtgcgtaatgtatacgtgggtaag 158  Q
      ||||| || ||||||||||||||  ||||||||||||||    
T  2041 ccatcctacgctttgttgtgcgtaacatatacgtgggtaag 2001  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 348
Target Start/End: Complemental strand, 14197346 - 14197281
Alignment:
Q  283 ttttttggtggcctcctgggattttttggaggatttgcttttgctccaacaacatattttgtaagc 348  Q
    ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  14197346 tttttcggtggtctactaggattttttggtggatttgcttttgctccaacaacatactttgtaagc 14197281  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 420 - 490
Target Start/End: Complemental strand, 14197211 - 14197141
Alignment:
Q  420 taaattttcagcttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttggtgg 490  Q
    ||||||||||||| ||||| || |||||||||  | ||||||| |||| ||||||||||||||||||||||    
T  14197211 taaattttcagctaccatgcataatgtggcttgcaatctacaaaccaaggagattcagcttgtcttggtgg 14197141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 487
Target Start/End: Original strand, 34410575 - 34410630
Alignment:
Q  432 ttccatgtatcatgtggcttaaactctacaatccaaagagattcagcttgtcttgg 487  Q
    ||||||||||||| ||||||||||| ||||| || ||||||||  |||||||||||    
T  34410575 ttccatgtatcatatggcttaaactttacaaacctaagagatttggcttgtcttgg 34410630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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