View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_16 (Length: 562)
Name: NF8910_low_16
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 8 - 546
Target Start/End: Complemental strand, 1413946 - 1413412
Alignment:
| Q |
8 |
cacagaagaaggaacaatatggtggcatgcacataatggttgggcaagagctacagttcatggggctgtcatcatttatcccaaacatggacacacttat |
107 |
Q |
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| T |
1413946 |
cacagaagaaggaacaatatggtggcatgcacataatggttgggcaagagctacagttcatggggctgtcatcatttatcccaaacatggacacacttat |
1413847 |
T |
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| Q |
108 |
ccctttcctaaacctcatgctgaggttccaattatactaggttctcactccttacccttttattttaatggcttaatacaactttaatccttttattttg |
207 |
Q |
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| T |
1413846 |
ccctttcctaaacctcatgctgaggttccaattatactaggttctcactccttacccttttattttaatggcttaatacaactttaatccttttattttg |
1413747 |
T |
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| Q |
208 |
tctcatttaagattttggtccttaannnnnnnngacttttcctcctactatgaaacttgaggctagctgaattttgataatataacaaataacaacttaa |
307 |
Q |
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| T |
1413746 |
tctcatttaagattttggtccttaatttt----gacctttcctcctactatgaaacttgaggctagctgaattttgataatataacaaataacaacttaa |
1413651 |
T |
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| Q |
308 |
ttcatgacatgacattgtgtaagcaaattatcacttactagtattgactaattttagttttattaaaacttaaattaatctatatcacaaatacaagtta |
407 |
Q |
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| T |
1413650 |
ttcatggcatgacattgtgtaagcaaattatcacttactagtattgactaattttagttttatcaaaacttaaattaatctatatcacaaatacaagtta |
1413551 |
T |
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| Q |
408 |
tacaacaaaatttgattattagttcaattcctatattgacattttcatcattgtgtaggagagtggtggaaagaacaagtaatggaaattccaaatgtag |
507 |
Q |
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| T |
1413550 |
tacaacaaaatttgattattagttcaattcctatattgacattttcattattgtgtaggagagtggtggaaagaacaagtaatggaaattccaaatgtag |
1413451 |
T |
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| Q |
508 |
caaacaaaactggaggagaaccaattctatcaaatgcat |
546 |
Q |
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| T |
1413450 |
caaacaaaactggaggagaaccaattctatcaaatgcat |
1413412 |
T |
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