View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_19 (Length: 520)
Name: NF8910_low_19
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 222 - 514
Target Start/End: Original strand, 1740913 - 1741212
Alignment:
| Q |
222 |
gtgttttgggagtccactgctacgctacactatcttctactaactagctat-------atcttgaattatgaatttgcccttcacgagaatatttttcct |
314 |
Q |
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| T |
1740913 |
gtgttttgggagtcggctgctacgctacgctatcttctactaactagatagtcgatagatcatgaattatgaatatgcccttcatggggatatttttctg |
1741012 |
T |
|
| Q |
315 |
catagattgttgtccttctactaaagtttaactaatttcatacattatagatttcatataaatattaaaatcgtttttcatgttattagaaggacacgac |
414 |
Q |
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|||| |||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1741013 |
cataacttgttgtcctgctattatagtttaactaatttcatacattatagatttcatataaatattaaaatcgtttttcatgttattagaaggacacgac |
1741112 |
T |
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| Q |
415 |
tcattggagaataagctccgttggattgttgacgtacgagacgtagttgatgcaatacttttggcttatgagaatcacaaggctgacgggagatacatct |
514 |
Q |
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| T |
1741113 |
tcattggagaataagctccgttggattgttgacgtacgagacgtagttaatgcaatacttttggcttatgagaatcacaaggcagacgggagatacatct |
1741212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 144 - 514
Target Start/End: Complemental strand, 2009454 - 2009083
Alignment:
| Q |
144 |
gtgtttatttttgtgcattcttctattttttagcctttataagtgtatggccatagcactacctgcttcaccgttatagtgttttgggagtccactgcta |
243 |
Q |
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| T |
2009454 |
gtgtttagttttgtgcattcttctattttttagccattataagtgtatggcaatacca-tacctgcttcaccgttatattgttttgggagtcggctgctt |
2009356 |
T |
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| Q |
244 |
cgctacactatcttctactaactagctatatcttgaattatg----aatttgcccttcacgagaatatttttcctcatagattgttgtccttctactaaa |
339 |
Q |
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| T |
2009355 |
cgctacgctatcttctactaactagatagatcatgaattatgtatgaatatgcccttcatggggatagttttctgcataacttgttctcctgccataata |
2009256 |
T |
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| Q |
340 |
gtttaactaatttcatacattatagatttcatataaatattaaaatcgtttttcatgttattagaaggacacgactcattggagaataagctccgttgga |
439 |
Q |
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||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||| |||||| ||||||||||||| ||||||| |
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| T |
2009255 |
atttg-ctaatttcatatattatagatttcatataaatattaaaattatttttcatgtc-ttagaaggttgtgactcagtggagaataagcttcgttgga |
2009158 |
T |
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| Q |
440 |
ttgttgacgtacgagacgtagttgatgcaatacttttggcttatgagaatcacaaggctgacgggagatacatct |
514 |
Q |
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| T |
2009157 |
ttgttgatgtacgagatgtagttaatgcaatactgttggcttatgagaatcacgaggcagacgggagatacatct |
2009083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 1740787 - 1740918
Alignment:
| Q |
18 |
atgccttatcaaattcttattataaaatgcatattcatgaactgtgcaatgcgagttaatgataaccatatgacttatataaaaggtacctactaatatt |
117 |
Q |
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| T |
1740787 |
atgccttatcaaattcttattataaaacacatatttatgaactgtgcaatgcgagttaatgataaccatataacttctataaaaggtagctactaatatg |
1740886 |
T |
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| Q |
118 |
gttaatgataaccatatttatgaaaggtgttt |
149 |
Q |
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| T |
1740887 |
gttaatgataaccatatttatgaaaggtgttt |
1740918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 2009650 - 2009592
Alignment:
| Q |
16 |
atatgccttatcaaattcttattataaaatgcatattcatgaactgtgcaatgcgagtt |
74 |
Q |
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| T |
2009650 |
atatgccttatcaaattcttattaaaaaatgcatgtttatgaactatacaatgcgagtt |
2009592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 5e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 154 - 514
Target Start/End: Complemental strand, 26221725 - 26221369
Alignment:
| Q |
154 |
ttgtgcattcttctattttttagcctttataagtgtatggccatagcactacctgcttcaccgttatagtgttttgggagtccactgctacgctacacta |
253 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| || |||||||||||||| ||| || ||||| ||| |
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| T |
26221725 |
ttgtccattcttctattttttagcctttataagtgtatggccataccactacccgcttcaccgcaatcgtgttttgggagtcggctgttatgctacgcta |
26221626 |
T |
|
| Q |
254 |
tcttctactaactagctatatcttgaattatgaatttgcccttcacgagaatatttttcctcatagattgttgtccttctactaaagtttaactaatttc |
353 |
Q |
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| T |
26221625 |
tctgctgctaactagatagatcatgaattatgaatatgcccttcattgggatttttctctgcataacttgttttcctgccattatagtttaactaatttc |
26221526 |
T |
|
| Q |
354 |
atacattatagatttcatataaatattaaaatcgtttttcatgttattagaaggacacgactcattggagaataagctccgttggattgttgacgtacga |
453 |
Q |
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| T |
26221525 |
atacattatagatttcatataaatattaaaatcatgtct----ttcttggaaggccgtgactcattggagaataagtgtggttggattgttgacgtacga |
26221430 |
T |
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| Q |
454 |
gacgtagttgatgcaatacttttggcttatgagaatcacaaggctgacgggagatacatct |
514 |
Q |
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| T |
26221429 |
gacgtagttgatgcaatacttttggcttatgagtatcacaaggcagacgggagatacatct |
26221369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 26221837 - 26221777
Alignment:
| Q |
16 |
atatgccttatcaaattcttattataaaatgcatattcatgaactgtgcaatgcgagttaa |
76 |
Q |
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|||||||||||||||||| ||||| |||||||||||| || ||||| |||||| |||||| |
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| T |
26221837 |
atatgccttatcaaattcgtattaaaaaatgcatatttttggactgtacaatgcaagttaa |
26221777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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