View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_2 (Length: 1215)

Name: NF8910_low_2
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_2
NF8910_low_2
[»] chr7 (10 HSPs)
chr7 (15-1199)||(28597552-28598739)
chr7 (554-676)||(6056241-6056363)
chr7 (575-668)||(44481296-44481389)
chr7 (595-671)||(24251645-24251721)
chr7 (605-671)||(16732139-16732205)
chr7 (605-671)||(17710273-17710339)
chr7 (586-660)||(24139228-24139302)
chr7 (605-671)||(29200870-29200936)
chr7 (618-671)||(9328530-9328583)
chr7 (618-671)||(30824422-30824475)
[»] chr8 (7 HSPs)
chr8 (884-1138)||(12326266-12326517)
chr8 (202-307)||(12325903-12326008)
chr8 (541-669)||(8670165-8670293)
chr8 (595-671)||(477961-478037)
chr8 (595-667)||(11870474-11870546)
chr8 (605-671)||(7127429-7127495)
chr8 (586-671)||(40588626-40588711)
[»] chr4 (12 HSPs)
chr4 (541-676)||(21163296-21163430)
chr4 (541-676)||(39251557-39251692)
chr4 (554-676)||(40727164-40727286)
chr4 (539-667)||(33582900-33583025)
chr4 (586-671)||(49951519-49951604)
chr4 (618-671)||(32576976-32577029)
chr4 (619-671)||(51259458-51259510)
chr4 (595-671)||(51734877-51734953)
chr4 (595-666)||(29655571-29655642)
chr4 (605-671)||(37245767-37245833)
chr4 (618-671)||(28426389-28426442)
chr4 (618-671)||(49119328-49119381)
[»] chr1 (10 HSPs)
chr1 (541-676)||(17975231-17975365)
chr1 (554-676)||(13075894-13076015)
chr1 (552-668)||(323765-323881)
chr1 (608-676)||(23756386-23756454)
chr1 (586-671)||(5609545-5609630)
chr1 (586-668)||(4395367-4395449)
chr1 (575-667)||(24538697-24538789)
chr1 (595-671)||(51113521-51113597)
chr1 (618-671)||(44527459-44527512)
chr1 (618-671)||(44602958-44603011)
[»] chr3 (7 HSPs)
chr3 (552-676)||(18720840-18720964)
chr3 (541-671)||(49525045-49525175)
chr3 (586-671)||(34497268-34497353)
chr3 (619-671)||(55199717-55199769)
chr3 (605-667)||(26046898-26046960)
chr3 (621-671)||(42340208-42340258)
chr3 (618-671)||(53497238-53497291)
[»] chr6 (7 HSPs)
chr6 (541-674)||(22534501-22534637)
chr6 (559-655)||(5542589-5542685)
chr6 (552-676)||(33792019-33792143)
chr6 (618-671)||(11731597-11731650)
chr6 (629-671)||(3100452-3100494)
chr6 (619-669)||(27443141-27443191)
chr6 (618-671)||(14680368-14680421)
[»] chr2 (6 HSPs)
chr2 (545-676)||(25538098-25538229)
chr2 (595-671)||(34695809-34695885)
chr2 (595-671)||(34718221-34718297)
chr2 (618-671)||(9710161-9710214)
chr2 (598-671)||(13109777-13109850)
chr2 (618-671)||(12130566-12130619)
[»] chr5 (9 HSPs)
chr5 (552-676)||(32378146-32378269)
chr5 (586-671)||(23075038-23075123)
chr5 (586-671)||(22767169-22767254)
chr5 (619-671)||(26597386-26597438)
chr5 (595-671)||(27532811-27532887)
chr5 (586-671)||(4268305-4268390)
chr5 (618-671)||(20205161-20205214)
chr5 (586-671)||(25731014-25731099)
chr5 (586-671)||(27292640-27292724)
[»] scaffold0252 (1 HSPs)
scaffold0252 (552-669)||(13329-13444)
[»] scaffold0003 (1 HSPs)
scaffold0003 (619-669)||(44170-44220)


Alignment Details
Target: chr7 (Bit Score: 1091; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 1091; E-Value: 0
Query Start/End: Original strand, 15 - 1199
Target Start/End: Original strand, 28597552 - 28598739
Alignment:
Q  15 tggagaaagcacttgaagttcagcttgcatctgttaaaacaaaaatatatatagaggtatttttaaaagagatgaaaataaagggtgactaaaattaaac 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28597552 tggagaaagcacttgaagttcagcttgcatctgttaaaacaaaaatatatatagaggtatttttaaaagagatgaaaataaatggtgactaaaattaaac 28597651  T
Q  115 attatagtattaattttgtcaaaatnnnnnnncattatagtattaattgaaggtaacaatttatgtttatgtactatataat----ataccagttgtaga 210  Q
    |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||    
T  28597652 attatagtattaattttgtcaaaataaaaaatcattatagtattaattgaaggtaacaatttatgtttatgtactatataatttatataccagttgtaga 28597751  T
Q  211 gcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgattctgttata 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28597752 gcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgattctgttata 28597851  T
Q  311 caacagaaacaaaatcagtttcaagtacaacaatttactatatataaataaatcaccactgaaaaaattatttatgcaacataaatttattaagacaaaa 410  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28597852 caacagaaacaaaatcagtttcaagtacaacaatttaatatatataaataaatcaccactgaaaaaattatttatgcaacataaatttattaagacaaaa 28597951  T
Q  411 tataaaattagtctataataattttatcatcaaacaaattaaattgctttctagtttcaaaaatattctatactagtaaactagtagttaaaaatagctt 510  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  28597952 tataaaattagtctataataattttatcatcaaacaaataaaattgctttctagtttcaaaaatattctatagtagtaaactagtagtaaaaaatagctt 28598051  T
Q  511 gattatgtaacctacataatatagttcaatttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccct 610  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28598052 gattatgtaacctacatgatatagttcaatttaaaaaa-attcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaatatgccgccct 28598150  T
Q  611 agcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaaaataagagtagtcattagtgtcgccggtattaataataa 710  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||    
T  28598151 agcaatcgtatgagcagccatgtttgcttgacgcctgacaaacttcacctcaaagttggaaaataggagtagtcattagtgtcaccggtattaataataa 28598250  T
Q  711 ttttcatttcttcaattttttcttaataaattttactatagtactaaatatattcatccatgtaaaatgaaaaataaataaatcatcctaagccaagaat 810  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598251 ttttcatttcttcaattttttcttaataaattctactatagtactaaatatattcatccatgtaaaatgaaaaataaataaatcatcctaagccaagaat 28598350  T
Q  811 aattgaaaggctaagaagagaagttggagaaaattgaatgaagtagttgaaaaaggcttactgaatccattaaagtttcaacaagagccaagctgtttat 910  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598351 aattgaaaggctaagaagagaagttggagaaaattgaatgaagtagttgaaaaaggcttactgaatccattaaagtttcaacaagagccaagctgtttat 28598450  T
Q  911 gataacaacaccactttctctagaagcctcagaaacaaaaccatttggtttcaaaccaatacaaggagtactaataatccttgtatattcctcatgatta 1010  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598451 gataacaacaccactttctctagaagcctcagaaacaaaaccatttggtttcaaaccaatacaaggagtactaataatccttgtatattcctcatgatta 28598550  T
Q  1011 aaaatttcttttccactttcaacacttctaatccaaagaggttcattagtttgtgccatcttcaccaactcatccattgcagccaaagcaagttcaagga 1110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598551 aaaatttcttttccactttcaacacttctaatccaaagaggttcatttgtttgtgccatcttcaccaactcatccattgcagccaaagcaagttcaagga 28598650  T
Q  1111 acatagacctctccattgatctatcaaaaccattactattagtatttgttaccatacttgttcctcttgtaattgaaggtggtgacatt 1199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28598651 acatagacctctccattgatctatcaaaaccattactattagtatttgttaccatacttgttcctcttgtaattgaaggtggtgacatt 28598739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 554 - 676
Target Start/End: Original strand, 6056241 - 6056363
Alignment:
Q  554 aatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaac 653  Q
    |||| ||||||||||||| | ||||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||||||||  ||||||    
T  6056241 aatagaaggaggacaaatttaaaaaacatggcgactaggccaagaacatgccgccctagcaatcgtatgaacaaccatgttcgcttgacgcccaacaaac 6056340  T
Q  654 ttcacctcaaagttggaaaataa 676  Q
    |||||||||||||||||||||||    
T  6056341 ttcacctcaaagttggaaaataa 6056363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 575 - 668
Target Start/End: Complemental strand, 44481389 - 44481296
Alignment:
Q  575 aaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttg 668  Q
    ||||| |||| |||||| | ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| ||||||    
T  44481389 aaaaatatggtgactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttg 44481296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 24251721 - 24251645
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  24251721 aagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 24251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 16732205 - 16732139
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  16732205 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 16732139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 17710339 - 17710273
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  17710339 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 17710273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 586 - 660
Target Start/End: Complemental strand, 24139302 - 24139228
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacct 660  Q
    |||||| | ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||    
T  24139302 gactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacct 24139228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 29200870 - 29200936
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |  ||||||||| ||||||||| ||| | ||| |||||||||||||| |||||||||    
T  29200870 cgccctagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaa 29200936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 9328530 - 9328583
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| ||||||||||| || |||||||||    
T  9328530 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacatcgaagttggaa 9328583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 30824422 - 30824475
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||  | ||| ||||||||||| ||||||||||||    
T  30824422 gtatgagcaaccatgttcgcttatctcctaacaaacttcacttcaaagttggaa 30824475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 2e-46; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 884 - 1138
Target Start/End: Original strand, 12326266 - 12326517
Alignment:
Q  884 agtttcaacaagagccaagctgtttatgataacaacaccactttctctagaagcctcagaaacaaaaccatttggtttcaaaccaatacaaggagtacta 983  Q
    |||||||||||| |||||||| || ||||| |||  |||| |||| || || |||||||||||||||||||| |||||||||||||| ||||||||   |    
T  12326266 agtttcaacaagggccaagctattgatgatgacagtaccagtttcccttgaggcctcagaaacaaaaccattaggtttcaaaccaatgcaaggagtg--a 12326363  T
Q  984 ataatccttgtatattcctcatgattaaaaatttcttttccactttcaacacttctaatccaaagaggttcattagtttgtgccatcttcaccaactcat 1083  Q
    ||  || |  ||||||||||||| || ||||||||  |||| | ||| | ||| |||||||||||||| ||| |||||||||||||||| ||||||||||    
T  12326364 atgttc-tcatatattcctcatggttcaaaatttcccttcctccttctatactcctaatccaaagagggtcactagtttgtgccatcttaaccaactcat 12326462  T
Q  1084 ccattgcagccaaagcaagttcaaggaacatagacctctccattgatctatcaaa 1138  Q
    |||| |||||||||||||||||||| ||||||||||| || |  |||||||||||    
T  12326463 ccatagcagccaaagcaagttcaagaaacatagacctttcaaccgatctatcaaa 12326517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 202 - 307
Target Start/End: Original strand, 12325903 - 12326008
Alignment:
Q  202 agttgtagagcaccatttctggttccatttattccactagatatcacttcagttgtggagcttcttgcaatcacacaagggaacatctctgaccatcgat 301  Q
    ||||| || ||||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||| | |||||| |||||||||  ||| ||||    
T  12325903 agttgaagtgcaccatttcttgttccatttattccattagatatcacttcatttgtggaggttcttgcaatgatacaaggaaacatctctatccaacgat 12326002  T
Q  302 tctgtt 307  Q
    ||||||    
T  12326003 tctgtt 12326008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 541 - 669
Target Start/End: Original strand, 8670165 - 8670293
Alignment:
Q  541 ttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttg 640  Q
    |||||| ||| |||||| ||||| ||||||||||||| | | || |||||| | ||||||| | |||||||| ||  || |||||| ||||||| | |||    
T  8670165 ttaaaatagagtcaatacaaggaagacaaatctcaaagatacggtgactagtccaagaacaggccgccctagtaagagtgtgagcaaccatgtttgtttg 8670264  T
Q  641 acgcctgacaaacttcacctcaaagttgg 669  Q
     ||||| |||||||| |||||||||||||    
T  8670265 tcgcctaacaaactttacctcaaagttgg 8670293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 477961 - 478037
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||  |||||||||    
T  477961 aagaacaggacgccctagctaaggtatgagcaaccatgttcgcttgtctcctaacaaacttcaccttgaagttggaa 478037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 667
Target Start/End: Complemental strand, 11870546 - 11870474
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagtt 667  Q
    ||||||| || |||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||    
T  11870546 aagaacaggttgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagtt 11870474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 605 - 671
Target Start/End: Complemental strand, 7127495 - 7127429
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |  |||||||||  |||||||||||| | ||| ||||||||||| ||||||||||||    
T  7127495 cgccctagctaaagtatgagcaatcatgttcgcttgtctcctaacaaacttcacatcaaagttggaa 7127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 40588626 - 40588711
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||| | ||||||||| |  ||||| |||  |||||||||||| | ||| |||||||||||||| |||||||||    
T  40588626 gactagcccaagaacaggccgccctagctaaagtatgtgcaatcatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 40588711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 2e-46; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 21163296 - 21163430
Alignment:
Q  541 ttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttg 640  Q
    ||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||  |||||||||||||| |||||||||||||||||| ||||||||||||    
T  21163296 ttaaaaaagat-caatacaaggaggacgaatctaaaaaacatggtgactaggtcaagaacatgtcgccttagcaatcgtatgagcagtcatgttcgcttg 21163394  T
Q  641 acgcctgacaaacttcacctcaaagttggaaaataa 676  Q
    ||||||||||||||||||||||||||||||||||||    
T  21163395 acgcctgacaaacttcacctcaaagttggaaaataa 21163430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 541 - 676
Target Start/End: Original strand, 39251557 - 39251692
Alignment:
Q  541 ttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttg 640  Q
    |||||||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||||   |||||||||||||||||||||||| |||| ||||    
T  39251557 ttaaaaaatattcaatacaaggaggacaaatctcaaaaacatggcgtctaggccaagaacatgctaccctagcaatcgtatgagcagccacgttcacttg 39251656  T
Q  641 acgcctgacaaacttcacctcaaagttggaaaataa 676  Q
    |||||||| |||||||||||||||||||||||||||    
T  39251657 acgcctgataaacttcacctcaaagttggaaaataa 39251692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 554 - 676
Target Start/End: Complemental strand, 40727286 - 40727164
Alignment:
Q  554 aatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaac 653  Q
    |||||||||||||||||||||||| ||||||||||||||| || |||||||| |||||||||||||||||||| | ||| ||||||||||||| ||||||    
T  40727286 aatataaggaggacaaatctcaaatacatggcgactaggccaaaaacatgtctccctagcaatcgtatgagcaactatgctcgcttgacgcctaacaaac 40727187  T
Q  654 ttcacctcaaagttggaaaataa 676  Q
    |||||||||||||||||||||||    
T  40727186 ttcacctcaaagttggaaaataa 40727164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 539 - 667
Target Start/End: Complemental strand, 33583025 - 33582900
Alignment:
Q  539 atttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgct 638  Q
    |||||||| ||| |||||| ||| ||||||||||||||| | | |  |||||| | ||||||| | |||| ||||||  || ||||||||||||||||||    
T  33583025 atttaaaatagaatcaatacaagcaggacaaatctcaaatatacgatgactagcccaagaacaagccgccttagcaagagtgtgagcagccatgttcgct 33582926  T
Q  639 tgacgcctgacaaacttcacctcaaagtt 667  Q
    || |||||   |||||| |||||||||||    
T  33582925 tgtcgcct---aaactttacctcaaagtt 33582900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 49951604 - 49951519
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  49951604 gactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 49951519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 32576976 - 32577029
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  32576976 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 32577029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 619 - 671
Target Start/End: Original strand, 51259458 - 51259510
Alignment:
Q  619 tatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  51259458 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 51259510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 51734877 - 51734953
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| | ||||||||| |  ||||||||| |||||||| |||| | ||| |||||||||||||| |||||||||    
T  51734877 aagaacaggccgccctagctaaagtatgagcaaccatgttcacttgtcacctaacaaacttcacctcgaagttggaa 51734953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 595 - 666
Target Start/End: Original strand, 29655571 - 29655642
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagt 666  Q
    ||||||| ||||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||| ||| ||||    
T  29655571 aagaacaggtcgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcatctcgaagt 29655642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 605 - 671
Target Start/End: Original strand, 37245767 - 37245833
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |  ||||||||| ||||||||| ||| | ||| |||||||||||||| |||||||||    
T  37245767 cgccctagctaaagtatgagcaaccatgttcgattgtctcctaacaaacttcacctcgaagttggaa 37245833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 28426442 - 28426389
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| ||||||||| |||| |||||||||    
T  28426442 gtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttggaa 28426389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 49119328 - 49119381
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| ||||||||| |||| |||||||||    
T  49119328 gtatgagcaaccatgttcgcttgtctcctaacaaacttctcctcgaagttggaa 49119381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 96; Significance: 2e-46; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 2e-46
Query Start/End: Original strand, 541 - 676
Target Start/End: Complemental strand, 17975365 - 17975231
Alignment:
Q  541 ttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttg 640  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |||||||||| |||||||| |||    
T  17975365 ttaaaaaagattcaataca-ggaggacaaatctcaaaaacatggcgactaggccaaaaacatgtctccctagcaattgtatgagcagtcatgttcgtttg 17975267  T
Q  641 acgcctgacaaacttcacctcaaagttggaaaataa 676  Q
    |||||||||||||||||||||||| |||||||||||    
T  17975266 acgcctgacaaacttcacctcaaatttggaaaataa 17975231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 1e-38
Query Start/End: Original strand, 554 - 676
Target Start/End: Original strand, 13075894 - 13076015
Alignment:
Q  554 aatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaac 653  Q
    |||| |||||||||||||||||||||||||| |||||||||| ||||||| |||||||| ||| |||||||||||||||||||||||| |||| ||||||    
T  13075894 aatacaaggaggacaaatctcaaaaacatggggactaggctatgaacatgccgccctag-aatggtatgagcagccatgttcgcttgatgcctaacaaac 13075992  T
Q  654 ttcacctcaaagttggaaaataa 676  Q
    ||||||||||||||| |||||||    
T  13075993 ttcacctcaaagttgaaaaataa 13076015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 552 - 668
Target Start/End: Original strand, 323765 - 323881
Alignment:
Q  552 tcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaa 651  Q
    ||||||||||||| ||||||||||||||||| |||||||||| ||||| |||  ||| |||||||||||| || ||| ||||| | |||||| || ||||    
T  323765 tcaatataaggagaacaaatctcaaaaacatagcgactaggccaagaatatgcggccttagcaatcgtattagtagctatgtttgattgacgtctaacaa 323864  T
Q  652 acttcacctcaaagttg 668  Q
    ||||||| |||||||||    
T  323865 acttcacttcaaagttg 323881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 608 - 676
Target Start/End: Original strand, 23756386 - 23756454
Alignment:
Q  608 cctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaaaataa 676  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||    
T  23756386 cctaacaatcgtatgagcagtcatgttcgcttgacgcctgacaaacttcacttcaaagttgaaaaataa 23756454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 5609630 - 5609545
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||||| ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  5609630 gactagcccaagaacatgccgccctagctaatgtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 5609545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 586 - 668
Target Start/End: Complemental strand, 4395449 - 4395367
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttg 668  Q
    |||||| | ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||||||||||    
T  4395449 gactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcaaagttg 4395367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 575 - 667
Target Start/End: Complemental strand, 24538789 - 24538697
Alignment:
Q  575 aaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagtt 667  Q
    ||||| |||| |||||| | |||||||||| | ||||||||  |||||||||  ||||||||||||   ||| || |||||||||||||||||    
T  24538789 aaaaatatggtgactagccgaagaacatgttgtcctagcaaaagtatgagcaatcatgttcgcttgtttcctaacgaacttcacctcaaagtt 24538697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 671
Target Start/End: Complemental strand, 51113597 - 51113521
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| ||||||||||| |   |||||||| ||||||||||||  | ||| |||||||||||||| |||||||||    
T  51113597 aagaacaggtcgccctagctaagctatgagcaaccatgttcgcttctctcctaacaaacttcacctcgaagttggaa 51113521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 44527512 - 44527459
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||||||||||||||||| | ||| | |||||||||||  |||||||||    
T  44527512 gtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaa 44527459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 44603011 - 44602958
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||  ||||||||||||| | ||| |||||||||||||| |||||||||    
T  44603011 gtatgagccaccatgttcgcttgtcccctaacaaacttcacctcgaagttggaa 44602958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 2e-37; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 2e-37
Query Start/End: Original strand, 552 - 676
Target Start/End: Complemental strand, 18720964 - 18720840
Alignment:
Q  552 tcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaa 651  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||||||||| |||| ||||||||||||||||| |||||| | ||||| |||| ||||    
T  18720964 tcaatacaaggaggacaaatctcaaaaacatggcgattaggccaagaacatgccgccatagcaatcgtatgagcaaccatgtgcacttgatgcctaacaa 18720865  T
Q  652 acttcacctcaaagttggaaaataa 676  Q
    |||||||||||||||||||| ||||    
T  18720864 acttcacctcaaagttggaagataa 18720840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 9e-27
Query Start/End: Original strand, 541 - 671
Target Start/End: Original strand, 49525045 - 49525175
Alignment:
Q  541 ttaaaaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttg 640  Q
    |||||| ||| |||||| ||||||||||||||||||||| |||| |||||| | |||||||   |||||||||||  || ||||||||||||||||||||    
T  49525045 ttaaaatagagtcaatacaaggaggacaaatctcaaaaatatggtgactagtccaagaacagaccgccctagcaagggtgtgagcagccatgttcgcttg 49525144  T
Q  641 acgcctgacaaacttcacctcaaagttggaa 671  Q
     ||||| |||||||| |||||||| ||||||    
T  49525145 tcgcctaacaaactttacctcaaaattggaa 49525175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 34497268 - 34497353
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||| | ||||||||| |   |||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  34497268 gactagcccaagaacaggccgccctagctaagctatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 34497353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 619 - 671
Target Start/End: Complemental strand, 55199769 - 55199717
Alignment:
Q  619 tatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  55199769 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 55199717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 605 - 667
Target Start/End: Complemental strand, 26046960 - 26046898
Alignment:
Q  605 cgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagtt 667  Q
    ||||||||| |  ||||||||| ||||||||||||| | ||| |||||| |||||||||||||    
T  26046960 cgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacgtcacctcaaagtt 26046898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 621 - 671
Target Start/End: Original strand, 42340208 - 42340258
Alignment:
Q  621 tgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  42340208 tgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 42340258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 53497291 - 53497238
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||||||||||||||||| | ||| | |||||||||||  |||||||||    
T  53497291 gtatgagcagccatgttcgcttgtctcctaataaacttcaccttgaagttggaa 53497238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 3e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 3e-36
Query Start/End: Original strand, 541 - 674
Target Start/End: Complemental strand, 22534637 - 22534501
Alignment:
Q  541 ttaaaaaagattcaata---taaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgc 637  Q
    |||||||||||||||||   |||||||||||||||||||||||||||||| |  || ||||| ||| ||||||| ||||||||||| || ||||||||||    
T  22534637 ttaaaaaagattcaatacaataaggaggacaaatctcaaaaacatggcgattgagccaagaaaatgccgccctaacaatcgtatgaacatccatgttcgc 22534538  T
Q  638 ttgacgcctgacaaacttcacctcaaagttggaaaat 674  Q
    |||| |||||||||||||||||||||||||| |||||    
T  22534537 ttgatgcctgacaaacttcacctcaaagttgaaaaat 22534501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 559 - 655
Target Start/End: Complemental strand, 5542685 - 5542589
Alignment:
Q  559 aaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaactt 655  Q
    |||||||||||||||||||||||||| |||||| | ||||| ||| |||||||||||  ||||||||| ||||||||||||| |||||  |||||||    
T  5542685 aaggaggacaaatctcaaaaacatggtgactagaccaagaatatgccgccctagcaagtgtatgagcaaccatgttcgcttgtcgcctagcaaactt 5542589  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 5e-16
Query Start/End: Original strand, 552 - 676
Target Start/End: Complemental strand, 33792143 - 33792019
Alignment:
Q  552 tcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaa 651  Q
    |||||| ||||| |||| |||| |||||||||  || ||||  ||||||||  ||||||| ||||||||||| || ||||||| | ||||||| | | ||    
T  33792143 tcaatacaaggacgacacatctaaaaaacatgatgattaggtcaagaacataccgccctaacaatcgtatgaacaaccatgtttgtttgacgcttaataa 33792044  T
Q  652 acttcacctcaaagttggaaaataa 676  Q
    ||| |||||||||||||||||||||    
T  33792043 actgcacctcaaagttggaaaataa 33792019  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 11731597 - 11731650
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  11731597 gtatgagcaaccatgttcgcttgcctcctaacaaacttcacctcgaagttggaa 11731650  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 629 - 671
Target Start/End: Complemental strand, 3100494 - 3100452
Alignment:
Q  629 catgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||||||||| | ||| ||||||||||||||||||||||||    
T  3100494 catgttcgcttgtctcctaacaaacttcacctcaaagttggaa 3100452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 669
Target Start/End: Complemental strand, 27443191 - 27443141
Alignment:
Q  619 tatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttgg 669  Q
    |||||||| ||||||||||||  | ||| ||||||||||||||||||||||    
T  27443191 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcaaagttgg 27443141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 14680421 - 14680368
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| |||||||||| || | ||| |||||||||||||| |||||||||    
T  14680421 gtatgagcaaccatgttcgcatgtctcctaacaaacttcacctcgaagttggaa 14680368  T

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Target: chr2 (Bit Score: 76; Significance: 2e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 2e-34
Query Start/End: Original strand, 545 - 676
Target Start/End: Complemental strand, 25538229 - 25538098
Alignment:
Q  545 aaaagattcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgc 644  Q
    ||||||||||||| |||| || ||||||||||||||||||||||||||| ||||||||| |||| ||| | | ||||||||| ||||||||||| |||||    
T  25538229 aaaagattcaatacaaggggggcaaatctcaaaaacatggcgactaggccaagaacatgccgccttagaatttgtatgagcatccatgttcgctagacgc 25538130  T
Q  645 ctgacaaacttcacctcaaagttggaaaataa 676  Q
    || ||||| ||||||||| |||||||||||||    
T  25538129 ctaacaaatttcacctcagagttggaaaataa 25538098  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 34695809 - 34695885
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  34695809 aagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 34695885  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 34718221 - 34718297
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||| | ||||||||| |  ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  34718221 aagaacaagccgccctagctaaagtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 34718297  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 9710214 - 9710161
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  9710214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 9710161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 598 - 671
Target Start/End: Original strand, 13109777 - 13109850
Alignment:
Q  598 aacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||||||||||||| |  |||||| || | ||||||| ||| | |||||||||||||||||||| |||||||    
T  13109777 aacatgtcgccctagctaaagtatgaacaactatgttcgtttgtctcctgacaaacttcacctcaacgttggaa 13109850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Original strand, 12130566 - 12130619
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | | | |||||||||||||| |||||||||    
T  12130566 gtatgagcaaccatgttcgcttgtctcataacaaacttcacctcgaagttggaa 12130619  T

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Target: chr5 (Bit Score: 73; Significance: 1e-32; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 1e-32
Query Start/End: Original strand, 552 - 676
Target Start/End: Complemental strand, 32378269 - 32378146
Alignment:
Q  552 tcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaa 651  Q
    |||||| | |||||| |||||||||||||||||||||||||| ||||||||| || | ||||||||||||||||||||||||||||||||   || ||||    
T  32378269 tcaatacagggaggaaaaatctcaaaaacatggcgactaggccaagaacatgccgtcatagcaatcgtatgagcagccatgttcgcttga-ttctaacaa 32378171  T
Q  652 acttcacctcaaagttggaaaataa 676  Q
    ||||||||||||||||| |||||||    
T  32378170 acttcacctcaaagttgaaaaataa 32378146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 23075123 - 23075038
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | |||||||||||| |||||| |   |||||||| ||||||||||||| | ||| ||||||||||||| ||||||||||    
T  23075123 gactagcccaagaacatgtcgtcctagctaaactatgagcaaccatgttcgcttgtctcctaacaaacttcaccttaaagttggaa 23075038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 586 - 671
Target Start/End: Original strand, 22767169 - 22767254
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||||| |||| |||| |  ||||||||| ||||||||| ||| | ||| |||||||||||||| |||||||||    
T  22767169 gactagcccaagaacatgccgccttagctaaagtatgagcaaccatgttcgtttgtctcctaacaaacttcacctcgaagttggaa 22767254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 619 - 671
Target Start/End: Original strand, 26597386 - 26597438
Alignment:
Q  619 tatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||||| ||||||||||||| | ||| |||||||||||||| |||||||||    
T  26597386 tatgagcaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 26597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 595 - 671
Target Start/End: Original strand, 27532811 - 27532887
Alignment:
Q  595 aagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||||| ||||||| |  |||| || | ||||||||||||| | ||| |||||||||||||| |||||||||    
T  27532811 aagaacatgtcaccctagctaaagtataagtaaccatgttcgcttgtctcctaacaaacttcacctcgaagttggaa 27532887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 4268390 - 4268305
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||||| ||||||||  |  ||||||||| ||||||||||||| | ||| | |||||||||||  |||||||||    
T  4268390 gactagcccaagaacatgccgccctagataaagtatgagcaaccatgttcgcttgtctcctaataaacttcaccttgaagttggaa 4268305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 618 - 671
Target Start/End: Complemental strand, 20205214 - 20205161
Alignment:
Q  618 gtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    ||||||||| ||||||||||||| | ||| |||||||||||||  |||||||||    
T  20205214 gtatgagcaaccatgttcgcttgtctcctaacaaacttcacctagaagttggaa 20205161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 25731099 - 25731014
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||| | ||||||||| |  ||||||||| ||||||||||||  | ||| |||||||||||||  |||||||||    
T  25731099 gactagcccaagaacaggccgccctagctaaagtatgagcaaccatgttcgcttatctcctaacaaacttcacctggaagttggaa 25731014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 586 - 671
Target Start/End: Complemental strand, 27292724 - 27292640
Alignment:
Q  586 gactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttggaa 671  Q
    |||||| | ||||||||||| ||||||| |  ||||||||| ||||||||||||| | ||||| ||||||||| |  |||||||||    
T  27292724 gactagcccaagaacatgtc-ccctagctaaagtatgagcaaccatgttcgcttgtctcctgataaacttcactttgaagttggaa 27292640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 552 - 669
Target Start/End: Complemental strand, 13444 - 13329
Alignment:
Q  552 tcaatataaggaggacaaatctcaaaaacatggcgactaggctaagaacatgtcgccctagcaatcgtatgagcagccatgttcgcttgacgcctgacaa 651  Q
    |||||| ||||||||||||||||||| ||| || |||||| | ||||||| | |||||||||||  ||  ||||||||||||||||||| || || ||||    
T  13444 tcaatacaaggaggacaaatctcaaagacacggtgactagcccaagaacaggccgccctagcaagagt--gagcagccatgttcgcttgtcgtctaacaa 13347  T
Q  652 acttcacctcaaagttgg 669  Q
    |||| |||||||||||||    
T  13346 actttacctcaaagttgg 13329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 619 - 669
Target Start/End: Original strand, 44170 - 44220
Alignment:
Q  619 tatgagcagccatgttcgcttgacgcctgacaaacttcacctcaaagttgg 669  Q
    |||||||| ||||||||||||  | ||| ||||||||||||||||||||||    
T  44170 tatgagcaaccatgttcgcttctctcctaacaaacttcacctcaaagttgg 44220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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