View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_21 (Length: 518)
Name: NF8910_low_21
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_21 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Complemental strand, 34909818 - 34909319
Alignment:
| Q |
1 |
ataccatggcaccagtgattttaggtcttttgtagagatttagagcccacataaaggttacaagaacagttccaacagcaaattgaactacagtcacggt |
100 |
Q |
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| T |
34909818 |
ataccatggcaccagtgattttaggtcttttgtagagatttagagcccacataaaggttacaagaacagttccaacagcaaattgaactacagtcacggt |
34909719 |
T |
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| Q |
101 |
tacagggaaatgacacgccttcaaaacctgcnnnnnnnnnnnncacatcaagttcaaaatccacattcaacatactcttcaccgttgcgaaaacacaagt |
200 |
Q |
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| T |
34909718 |
tacagggaaatgacacgccttcaaaacctgcaaaaagaaaaaacacatcaagttcaaaatccaaattcaacatactcttcaccgttgcgaaaacacaagt |
34909619 |
T |
|
| Q |
201 |
taacacgatacaactaccaactaaaaagattagtcccttgaaataactgaaattcatttaaagagtacagttgacttctccaaagaaatgtataaataaa |
300 |
Q |
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| T |
34909618 |
taatacgatacaactaccaactaaaaagattaatccattgaaataactgaaattcatttaaagagtacagtcgacttctccaaagaaatgtataaataaa |
34909519 |
T |
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| Q |
301 |
acaattattgtaattaaaataaacattgagaaaatagatctcatgaaaagaatgaagtagtacctgtttgttgtaaatattgaagtagatgttaaagagg |
400 |
Q |
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| T |
34909518 |
acaaaaattgtaattaaaataaacattgagaaaatagatctcatgaaaagaatgaagtagtacctgtttgttgtaaatattgaagtagatgttaaagagg |
34909419 |
T |
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| Q |
401 |
taccataaaccgaacaaggatccaagctgaagagttttgagcaacgaactagactcggcggaggagtcaccggcgctttcggggacggaagtggcttgag |
500 |
Q |
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| T |
34909418 |
taccataaaccgaacaaggatccaagctgaagagttttgagcaacgaactagactcggcggaggagtcaccggcgctttcggggacggaagtggcttgag |
34909319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 289296 - 289379
Alignment:
| Q |
46 |
cccacataaaggttacaagaacagttccaacagcaaattgaactacagtcacggttacagggaaatgacacgccttcaaaacct |
129 |
Q |
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|||||| |||||||||||||| |||||||| |||||||| ||||||| |||| || ||| ||||| |||| |||||||||||| |
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| T |
289296 |
cccacacaaaggttacaagaatagttccaatagcaaattcaactacaatcacagtcacaaggaaaagacaaaccttcaaaacct |
289379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 46 - 129
Target Start/End: Complemental strand, 18198501 - 18198418
Alignment:
| Q |
46 |
cccacataaaggttacaagaacagttccaacagcaaattgaactacagtcacggttacagggaaatgacacgccttcaaaacct |
129 |
Q |
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|||||| |||||||||||||| |||||||| |||||||| ||||||| |||| || ||| ||||| |||| |||||||||||| |
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| T |
18198501 |
cccacacaaaggttacaagaatagttccaatagcaaattcaactacaatcacagtcacaaggaaaagacaaaccttcaaaacct |
18198418 |
T |
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