View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_25 (Length: 497)
Name: NF8910_low_25
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 117 - 275
Target Start/End: Complemental strand, 8894695 - 8894538
Alignment:
| Q |
117 |
tagcataatatacaggaactcatcagatcaataatcagccattgatctaaacaagaattggaaagtgttatacttcgaatccaagcaacctatttcaaat |
216 |
Q |
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| T |
8894695 |
tagcataatatacaggaactc-tcagatcaataatcagccattgatctaaacaagaattggaaagtgttatacttcgattccaagcaacctatttcaaat |
8894597 |
T |
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| Q |
217 |
tctctattccatttccatctgcaatcctatatacatttcctttcactttttcacttgtt |
275 |
Q |
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| T |
8894596 |
tctctattccatttccatctacaatcctatatacatttcctttcactttttcacttgtt |
8894538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 352 - 481
Target Start/End: Complemental strand, 8894476 - 8894344
Alignment:
| Q |
352 |
atggaagaagagataatgcatatagaacgtcaagaagatcctaaccaacaaccccattcacaacgtcatttccctaacaaaatgcc---acaacaacaac |
448 |
Q |
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| T |
8894476 |
atggaaggagaaataatgcatatagaacgtcaagaagatcctaaccaacaaccccattcacaacgtcatttccctaacaaaatgccgcaacaacaacaac |
8894377 |
T |
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| Q |
449 |
gtcgtcaataccccgaaatgccacaacaacaac |
481 |
Q |
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| T |
8894376 |
atcgtcaatatcccgaaatgccacaacaacaac |
8894344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 8894811 - 8894757
Alignment:
| Q |
1 |
atattatatttgctgtttgtggtactcaataagagtttggattacactaagttag |
55 |
Q |
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| T |
8894811 |
atattatatttgctgtttgtggtactcaataagagtttggattacactaagttag |
8894757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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