View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_26 (Length: 488)
Name: NF8910_low_26
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 88 - 470
Target Start/End: Complemental strand, 41649898 - 41649515
Alignment:
| Q |
88 |
catgcattcaaagtgttaaggtgggaaatggaaaagaaagaaaagaagttaaatcaaatggaacaacgcatattcattgctcactagatgttactatatt |
187 |
Q |
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| T |
41649898 |
catgcattcaaagtgttaaggtgggaaatggaaaagaaaaaaaagaagttaaatcaaatggaacaacgcatattcattgctcactagatgttactatata |
41649799 |
T |
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| Q |
188 |
taagcagtggacagta--gcaggtggtagtagctagtaggattggtggtagtaccaaatttttctaaaaaatgttatatctaataaaaacaaatgatttg |
285 |
Q |
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| T |
41649798 |
taagcagtggacagtagcgcaggtggtagtagctagtaggattggtggtagtaccaaattttaaaaaaaaatgttatatctaataaaaacaaatgatttg |
41649699 |
T |
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| Q |
286 |
taaataaagacacaggtaccgtccattgaaataatctcnnnnnnnnnnnnnnnnttgttatcatgatatttgtacgaagcttcaacaaccatttatcaat |
385 |
Q |
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| T |
41649698 |
taaataaagacacaggtaccgtcaattgaaataatctc-aaaaaaaaatataatttgttatcatgatatttgtacgaagcttcaacaaccatttatcaat |
41649600 |
T |
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| Q |
386 |
aattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaactctaaccaattggtaaaga |
470 |
Q |
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| T |
41649599 |
aattaatatttgtagaagaatgaaaatttcattcaaatttttccatacacatgaatgaatctaaactctaaccacttgataaaga |
41649515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 88 - 233
Target Start/End: Original strand, 43228260 - 43228404
Alignment:
| Q |
88 |
catgcattcaaagtgttaaggtgggaaatggaaaagaaagaaaagaagttaaatcaaatggaacaacgcatattcattgctcactaga-tgttactatat |
186 |
Q |
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||||||||||||||||| | || ||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||| |||||| |||||||||| |
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| T |
43228260 |
catgcattcaaagtgttgaactgagaaatggaaaagaaagaaaagaagttaaatctaatggaacaacacatgttcattgct-actagattgttactata- |
43228357 |
T |
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| Q |
187 |
ttaagcagtggacagtagcaggtggtagtag-ctagtaggattggtgg |
233 |
Q |
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|| |||||||||||||||| |||||||||| || ||||||||||||| |
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| T |
43228358 |
-tatgcagtggacagtagcaagtggtagtagcctggtaggattggtgg |
43228404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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