View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_28 (Length: 474)
Name: NF8910_low_28
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 34076602 - 34077057
Alignment:
| Q |
1 |
gaaaattcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaattcatcac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34076602 |
gaaaattcacgagtgtatcaccgtccttaagctgaggaacacacacatactcttgtcttcaattctcaacaatgcatatccaacccaaacaattcatcac |
34076701 |
T |
|
| Q |
101 |
atttaggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttacgtggtccacaccaaatcaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34076702 |
atttaggttggtgaagttttcacgagctaaaaccatttgcgtgtctctttattcacccatacccaccaaactctgtttaagtggtccacaccaaatcaac |
34076801 |
T |
|
| Q |
201 |
cacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgcnnnnnnnnnnnnnnnnatgatcatgatcatg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
34076802 |
cacgtaaaaaaccacacctttcttcttttgttcaatctcaaacactgttttatccattaccctttatgctttttctttttcttttatgatcatgatcatg |
34076901 |
T |
|
| Q |
301 |
ataatgtgaagtgagnnnnnnnggtatattgtgttgcttgctgcatagtgaaggtttcatctttttaagcaaatggaccgacctgcgaacgttgttgggc |
400 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34076902 |
ataatgtgaagtgagtttttttggtatattgtgttgcttgctgcatagtgaaggtttcatctttttaagtaaatggaccgacctgcgaacgttgttgggc |
34077001 |
T |
|
| Q |
401 |
cgggaatggacatgccgattatgcatgatagtgatcgctatgaacttgttcgtgat |
456 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34077002 |
cgggaatggacatgctgattatgcatgatagtgatcgctatgaacttgttcgtgat |
34077057 |
T |
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