View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_29 (Length: 474)
Name: NF8910_low_29
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 442; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 4346730 - 4347190
Alignment:
| Q |
1 |
tgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaagcaatagtggagaaggctttccaaa |
100 |
Q |
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| T |
4346730 |
tgaatgctcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaagcaatagtggagaaggctttccaaa |
4346829 |
T |
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| Q |
101 |
tattgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctgtgactatgtgagtctaagacatggtttaa |
200 |
Q |
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| T |
4346830 |
t-ttgtagagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctgtgactatgtgagtctaagacatggtttaa |
4346928 |
T |
|
| Q |
201 |
attatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctttgatttaggagacaacagtattgc |
300 |
Q |
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| T |
4346929 |
attatcccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctttgatttaggagacaacagtattgc |
4347028 |
T |
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| Q |
301 |
attaagtaaataaatgtcaggcaagaactacattatcctgtcatatacatgccataggaaagaactattttgtttagcatgcatcttctttattgttgtg |
400 |
Q |
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| T |
4347029 |
attaagtaaataaatgtcaggcaaaaactacattatcctgtcatatacatgccataggaaagaactattttgtttagcatgcatcttttttattgttgtg |
4347128 |
T |
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| Q |
401 |
tcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttg |
462 |
Q |
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| T |
4347129 |
tcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttg |
4347190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 107 - 276
Target Start/End: Original strand, 4363264 - 4363432
Alignment:
| Q |
107 |
agagaaggctttccaaatgcaaacaatcgcagcaatcccagtacgcttctagaagaatttctctgtgactatgtgagtctaagacatggtttaaattatc |
206 |
Q |
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| T |
4363264 |
agagaaggttttccaaatgcaaacaatcgcagcaatctcagtacacttcaagaagaattcctctgtgattatgtgagtctaagacatgttttaaattctc |
4363363 |
T |
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| Q |
207 |
ccaatcaagtcgctagttggctcttcaatgtattcttataagtgtgtgcctatagagtttacttttcctt |
276 |
Q |
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| T |
4363364 |
ccaatcaagtcactagtttgatctttaatgtattcttat-agtgtgtgcgtatagagtttagttttcctt |
4363432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 356 - 451
Target Start/End: Original strand, 4363510 - 4363605
Alignment:
| Q |
356 |
aggaaagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatt |
451 |
Q |
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| T |
4363510 |
aggaaagaactattttgtttagcatgcatctttttcattggtgtggcaggatgcttgcattgagaattgtcattcttttcctttctatttatgatt |
4363605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 4362919 - 4363006
Alignment:
| Q |
1 |
tgaatgttcttccaagaggatttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaagcaatagtggaga |
88 |
Q |
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| T |
4362919 |
tgaatgctcttccaagattgtttctcctcaagtagagtccacagatgattctaatcaaagacaaaaaagaagaaaacactggtggaga |
4363006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 366 - 461
Target Start/End: Complemental strand, 4118801 - 4118706
Alignment:
| Q |
366 |
tattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaattt |
461 |
Q |
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| T |
4118801 |
tattttatttagcatgcatattttttattgatgtgccaagatgcttgcattaagatttgtcactcttttcctttctattttttatttatggaattt |
4118706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 272 - 330
Target Start/End: Original strand, 4363463 - 4363521
Alignment:
| Q |
272 |
tcctttgatttaggagacaacagtattgcattaagtaaataaatgtcaggcaagaacta |
330 |
Q |
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| T |
4363463 |
tcctttgatgtaggagacaacaatattgcattaagtaaataaatgtcaggaaagaacta |
4363521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 413 - 462
Target Start/End: Complemental strand, 4131589 - 4131540
Alignment:
| Q |
413 |
cattgagaattgtcattcttttcctttctatttttgatttgtggaatttg |
462 |
Q |
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| T |
4131589 |
cattgagaattgtcattcttttcctttctatttttgattggtggaatttg |
4131540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 360 - 451
Target Start/End: Original strand, 4337992 - 4338083
Alignment:
| Q |
360 |
aagaactattttgtttagcatgcatcttctttattgttgtgtcaggatgctcgcattgagaattgtcattcttttcctttctatttttgatt |
451 |
Q |
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| T |
4337992 |
aagaattattttgtttaacatgcatattttttatcggtgtgccatgatgctcgcatcgagaattgccattctttttctttctaattttgatt |
4338083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 405 - 462
Target Start/End: Complemental strand, 4121745 - 4121688
Alignment:
| Q |
405 |
gatgctcgcattgagaattgtcattcttttcctttctatttttgatttgtggaatttg |
462 |
Q |
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| T |
4121745 |
gatgcttgcattgagaattgtcattcttttcatttctattttagatttgtggattttg |
4121688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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