View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_32 (Length: 467)

Name: NF8910_low_32
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_32
NF8910_low_32
[»] chr4 (17 HSPs)
chr4 (135-341)||(48432802-48433008)
chr4 (24-121)||(48432664-48432761)
chr4 (353-451)||(48433145-48433243)
chr4 (416-449)||(9988705-9988738)
chr4 (417-449)||(683072-683104)
chr4 (421-451)||(1336654-1336684)
chr4 (417-451)||(21732367-21732401)
chr4 (418-451)||(10435087-10435120)
chr4 (417-446)||(19262931-19262960)
chr4 (420-449)||(46632847-46632876)
chr4 (421-449)||(8457945-8457973)
chr4 (417-449)||(29388373-29388405)
chr4 (419-451)||(31901286-31901318)
chr4 (419-451)||(43093534-43093566)
chr4 (418-450)||(45267888-45267920)
chr4 (417-449)||(45615422-45615454)
chr4 (417-449)||(51383995-51384027)
[»] chr1 (16 HSPs)
chr1 (150-201)||(3804891-3804941)
chr1 (417-451)||(50195472-50195506)
chr1 (26-115)||(23620602-23620699)
chr1 (26-115)||(23706245-23706342)
chr1 (26-115)||(23737381-23737478)
chr1 (420-451)||(36041367-36041398)
chr1 (421-451)||(23621067-23621097)
chr1 (421-451)||(23652412-23652442)
chr1 (421-451)||(23737846-23737876)
chr1 (418-451)||(26777385-26777418)
chr1 (417-446)||(32637858-32637887)
chr1 (416-449)||(43609824-43609857)
chr1 (417-449)||(18556033-18556065)
chr1 (417-449)||(26390140-26390172)
chr1 (417-449)||(26462652-26462684)
chr1 (417-449)||(31667445-31667477)
[»] chr3 (6 HSPs)
chr3 (117-193)||(1922516-1922592)
chr3 (417-449)||(1502594-1502626)
chr3 (275-329)||(53284925-53284978)
chr3 (276-329)||(54138786-54138838)
chr3 (417-449)||(4946211-4946243)
chr3 (418-450)||(47678860-47678892)
[»] chr6 (7 HSPs)
chr6 (275-329)||(11844782-11844835)
chr6 (417-449)||(10158004-10158036)
chr6 (417-449)||(10335383-10335415)
chr6 (417-449)||(18803267-18803299)
chr6 (417-449)||(29449701-29449733)
chr6 (417-449)||(34057974-34058006)
chr6 (418-450)||(34547214-34547246)
[»] chr7 (8 HSPs)
chr7 (417-450)||(6824236-6824269)
chr7 (418-449)||(10893877-10893908)
chr7 (417-451)||(46550798-46550832)
chr7 (420-449)||(18750896-18750925)
chr7 (417-449)||(650539-650571)
chr7 (417-449)||(37610056-37610088)
chr7 (417-449)||(37776002-37776034)
chr7 (417-449)||(43160504-43160536)
[»] chr8 (8 HSPs)
chr8 (417-449)||(32691763-32691795)
chr8 (417-451)||(1586626-1586660)
chr8 (417-451)||(10002170-10002204)
chr8 (416-449)||(8917542-8917575)
chr8 (417-449)||(6205233-6205265)
chr8 (417-449)||(16994060-16994092)
chr8 (417-449)||(31548300-31548332)
chr8 (417-449)||(31681837-31681869)
[»] chr5 (4 HSPs)
chr5 (417-451)||(27253303-27253337)
chr5 (418-451)||(29200807-29200840)
chr5 (421-449)||(645352-645380)
chr5 (417-449)||(10009846-10009878)
[»] scaffold0050 (1 HSPs)
scaffold0050 (417-449)||(59145-59177)
[»] chr2 (1 HSPs)
chr2 (417-449)||(26787745-26787777)


Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 135 - 341
Target Start/End: Original strand, 48432802 - 48433008
Alignment:
Q  135 aatctgatgcttgtcaaggagttgtaaaaacatgcaaggacaaaaacaaaagtacatactactcatagagtacatgcaaacataatcaaagtcattaaaa 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48432802 aatctgatgcttgtcaaggagttgtaaaaacatgcaaggacaaaaacaaaagtacatactactcatagagtacatgcaaacataatcaaagtcattaaaa 48432901  T
Q  235 attaacacaacttgattatatataaattatagcacacaccacacatataatgcaaataacacaagaaaagatcacaatagcttacattgagaagacaaca 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48432902 attaacacaacttgattatatataaattatagcacacaccacacatataatgcaaataacacaagaaaagatcacaatagcttacattgagaagacaaca 48433001  T
Q  335 tgaatta 341  Q
    | |||||    
T  48433002 taaatta 48433008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 48432664 - 48432761
Alignment:
Q  24 ggaaagctttgaagaaaacagaacacaatcttaaagaacgctgattgcaaacagtgaagacctctgaaaacattcagaatttgtcttcataataaaat 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48432664 ggaaagctttgaagaaaacagaacacaatcttaaagaacgctgattgcaaacagtgaagacctctgaaaacattcagaatttgtcttcataataaaat 48432761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 353 - 451
Target Start/End: Original strand, 48433145 - 48433243
Alignment:
Q  353 gtgtgtattaaagcgcacaaattaataaatataaaaaatgtgtcaaatgtccgacacgattaaggacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| || |  ||||| ||||||||| ||||||||||||||||| |||||||    
T  48433145 gtgtgtattaaagcgcacaaattaataaatataaaaaatgtgtctaatgtctgagagcattaaagacacatgtaattacattcaattatgttatttttt 48433243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 9988705 - 9988738
Alignment:
Q  416 ggacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||||||||||    
T  9988705 ggacacatgtgattacattcaattatgtcatttt 9988738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 683104 - 683072
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||||||||    
T  683104 gacacatgtgattacattcaattatgtcatttt 683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 1336654 - 1336684
Alignment:
Q  421 catgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||    
T  1336654 catgtgattacattcaattatgtcatttttt 1336684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 21732367 - 21732401
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||| ||||||||||||||||||    
T  21732367 gacacatgtgattacaatcaattatgtcatttttt 21732401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 10435087 - 10435120
Alignment:
Q  418 acacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||| |||||||||||    
T  10435087 acacatgtgattacattcaattttgtcatttttt 10435120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 446
Target Start/End: Original strand, 19262931 - 19262960
Alignment:
Q  417 gacacatgtgattacattcaattatgtcat 446  Q
    ||||||||||||||||||||||||||||||    
T  19262931 gacacatgtgattacattcaattatgtcat 19262960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Original strand, 46632847 - 46632876
Alignment:
Q  420 acatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||||||    
T  46632847 acatgtgattacattcaattatgtcatttt 46632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 8457973 - 8457945
Alignment:
Q  421 catgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||||    
T  8457973 catgtgattacattcaattatgtcatttt 8457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 29388373 - 29388405
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||| ||||||||||||||||||||||||||||    
T  29388373 gacatatgtgattacattcaattatgtcatttt 29388405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 31901286 - 31901318
Alignment:
Q  419 cacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||| ||||||||    
T  31901286 cacatgtgattacattcaattatgccatttttt 31901318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 419 - 451
Target Start/End: Original strand, 43093534 - 43093566
Alignment:
Q  419 cacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||| ||||||||    
T  43093534 cacatgtgattacattcaattatgccatttttt 43093566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 45267920 - 45267888
Alignment:
Q  418 acacatgtgattacattcaattatgtcattttt 450  Q
    |||||| ||||||||||||||||||||||||||    
T  45267920 acacatatgattacattcaattatgtcattttt 45267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 45615422 - 45615454
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||| |||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcatttt 45615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 51383995 - 51384027
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||| |||||||    
T  51383995 gacacatgtgattacattcaattatttcatttt 51384027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 3804941 - 3804891
Alignment:
Q  150 aaggagttgtaaaaacatgcaaggacaaaaacaaaagtacatactactcata 201  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  3804941 aaggagttgtaaaaacatgcaaggac-aaaacaaaagtacataatactcata 3804891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 50195472 - 50195506
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||||||    
T  50195472 gacacatgtgattacattcaattatgtcatttttt 50195506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 23620602 - 23620699
Alignment:
Q  26 aaagctttgaagaaaacagaacacaatcttaaagaacgctgattgcaaacagtga-------agacctctg-aaaacattcagaatttgtcttcataa 115  Q
    ||||||||||||||||||| | |||||||||| |||| ||  |||| ||||||||       |||| |||| ||||||||||||||||||||||||||    
T  23620602 aaagctttgaagaaaacagtatacaatcttaatgaacactttttgccaacagtgaagacattagacatctgaaaaacattcagaatttgtcttcataa 23620699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 23706342 - 23706245
Alignment:
Q  26 aaagctttgaagaaaacagaacacaatcttaaagaacgctgattgcaaacagtga-------agacctctg-aaaacattcagaatttgtcttcataa 115  Q
    ||||||||||||||||||| | |||||||||| |||| ||  |||| ||||||||       |||| |||| ||||||||||||||||||||||||||    
T  23706342 aaagctttgaagaaaacagtatacaatcttaatgaacactttttgccaacagtgaagacattagacatctgaaaaacattcagaatttgtcttcataa 23706245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 23737381 - 23737478
Alignment:
Q  26 aaagctttgaagaaaacagaacacaatcttaaagaacgctgattgcaaacagtga-------agacctctg-aaaacattcagaatttgtcttcataa 115  Q
    ||||||||||||||||||| | |||||||||| |||| ||  |||| ||||||||       |||| |||| ||||||||||||||||||||||||||    
T  23737381 aaagctttgaagaaaacagtatacaatcttaatgaacactttttgccaacagtgaagacattagacatctgaaaaacattcagaatttgtcttcataa 23737478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 451
Target Start/End: Complemental strand, 36041398 - 36041367
Alignment:
Q  420 acatgtgattacattcaattatgtcatttttt 451  Q
    ||||||||||||||||||||||||||||||||    
T  36041398 acatgtgattacattcaattatgtcatttttt 36041367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 23621067 - 23621097
Alignment:
Q  421 catgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||    
T  23621067 catgtgattacattcaattatgtcatttttt 23621097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 23652412 - 23652442
Alignment:
Q  421 catgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||    
T  23652412 catgtgattacattcaattatgtcatttttt 23652442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 421 - 451
Target Start/End: Original strand, 23737846 - 23737876
Alignment:
Q  421 catgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||||||||    
T  23737846 catgtgattacattcaattatgtcatttttt 23737876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 26777385 - 26777418
Alignment:
Q  418 acacatgtgattacattcaattatgtcatttttt 451  Q
    ||||||||||||||||||||||| ||||||||||    
T  26777385 acacatgtgattacattcaattaagtcatttttt 26777418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 446
Target Start/End: Complemental strand, 32637887 - 32637858
Alignment:
Q  417 gacacatgtgattacattcaattatgtcat 446  Q
    ||||||||||||||||||||||||||||||    
T  32637887 gacacatgtgattacattcaattatgtcat 32637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 43609824 - 43609857
Alignment:
Q  416 ggacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||| |||||    
T  43609824 ggacacatgtgattacattcaattatgttatttt 43609857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 18556033 - 18556065
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||| ||||||||||||||||    
T  18556033 gacacatgtgattacagtcaattatgtcatttt 18556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 26390140 - 26390172
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||| |||||||||||||||||||||||||||    
T  26390140 gacacttgtgattacattcaattatgtcatttt 26390172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 26462652 - 26462684
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||| |||||||    
T  26462652 gacacatgtgattacattcaattatttcatttt 26462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 31667477 - 31667445
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||| ||||||||||||||    
T  31667477 gacacatgtgattacatttaattatgtcatttt 31667445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 1922592 - 1922516
Alignment:
Q  117 aaaattgcagatggaccaaatctgatgcttgtcaaggagttgtaaaaacatgcaaggacaaaaacaaaagtacatac 193  Q
    ||||| ||| ||||||||||||| |||| || | |||| || |||||||||||| | ||||||||||||||||||||    
T  1922592 aaaatcgcaaatggaccaaatctaatgcatgaccaggacttctaaaaacatgcatgtacaaaaacaaaagtacatac 1922516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 1502626 - 1502594
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||||||||    
T  1502626 gacacatgtgattacattcaattatgtcatttt 1502594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 329
Target Start/End: Complemental strand, 53284978 - 53284925
Alignment:
Q  275 acacatataatgcaaataacacaagaaaagatcacaatagcttacattgagaaga 329  Q
    ||||||||||||||||||||||||||| |||  | |||||||||||| |||||||    
T  53284978 acacatataatgcaaataacacaagaagaga-gagaatagcttacatagagaaga 53284925  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 54138838 - 54138786
Alignment:
Q  276 cacatataatgcaaataacacaagaaaagatcacaatagcttacattgagaaga 329  Q
    |||||||||||||||||||||||||| |||  | |||||||||||| |||||||    
T  54138838 cacatataatgcaaataacacaagaagaga-gagaatagcttacatagagaaga 54138786  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 4946211 - 4946243
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||| |||||||    
T  4946211 gacacatgtgattacattcaattatatcatttt 4946243  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 450
Target Start/End: Complemental strand, 47678892 - 47678860
Alignment:
Q  418 acacatgtgattacattcaattatgtcattttt 450  Q
    |||||| ||||||||||||||||||||||||||    
T  47678892 acacatatgattacattcaattatgtcattttt 47678860  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 275 - 329
Target Start/End: Original strand, 11844782 - 11844835
Alignment:
Q  275 acacatataatgcaaataacacaagaaaagatcacaatagcttacattgagaaga 329  Q
    |||||||||||||||||||||||||||||||  | |||||||||||| |||||||    
T  11844782 acacatataatgcaaataacacaagaaaaga-gagaatagcttacatagagaaga 11844835  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 10158036 - 10158004
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||| ||||||||||||||    
T  10158036 gacacatgtgattacattgaattatgtcatttt 10158004  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 10335383 - 10335415
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||| |||||||||||||||||||||||||    
T  10335383 gacacatctgattacattcaattatgtcatttt 10335415  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 18803299 - 18803267
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||| |||||    
T  18803299 gacacatgtgattacattcaattatgtaatttt 18803267  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 29449733 - 29449701
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||| |||||    
T  29449733 gacacatgtgattacattcaattatgttatttt 29449701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 34058006 - 34057974
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||| ||||||||||||||||    
T  34058006 gacacatgtgattacagtcaattatgtcatttt 34057974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 418 - 450
Target Start/End: Original strand, 34547214 - 34547246
Alignment:
Q  418 acacatgtgattacattcaattatgtcattttt 450  Q
    ||||||||||||||||| |||||||||||||||    
T  34547214 acacatgtgattacattaaattatgtcattttt 34547246  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 417 - 450
Target Start/End: Complemental strand, 6824269 - 6824236
Alignment:
Q  417 gacacatgtgattacattcaattatgtcattttt 450  Q
    ||||||||||||||||||||||||||||||||||    
T  6824269 gacacatgtgattacattcaattatgtcattttt 6824236  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 449
Target Start/End: Original strand, 10893877 - 10893908
Alignment:
Q  418 acacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||||||||    
T  10893877 acacatgtgattacattcaattatgtcatttt 10893908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 46550798 - 46550832
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||| ||||||||||||||||||    
T  46550798 gacacatgtgattacactcaattatgtcatttttt 46550832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 449
Target Start/End: Complemental strand, 18750925 - 18750896
Alignment:
Q  420 acatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcatttt 18750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 650571 - 650539
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||| |||||||||||||||||||    
T  650571 gacacatgtgattgcattcaattatgtcatttt 650539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 37610056 - 37610088
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||| ||||||||||||    
T  37610056 gacacatgtgattacattcagttatgtcatttt 37610088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 37776034 - 37776002
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||| ||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcatttt 37776002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 43160536 - 43160504
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||||||| |||||    
T  43160536 gacacatgtgattacattcaattatgttatttt 43160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 32691795 - 32691763
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||||||||    
T  32691795 gacacatgtgattacattcaattatgtcatttt 32691763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Complemental strand, 1586660 - 1586626
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    ||||||||||||||| |||||||||||||||||||    
T  1586660 gacacatgtgattacgttcaattatgtcatttttt 1586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Original strand, 10002170 - 10002204
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||| ||||||||||||||||    
T  10002170 gacacatgtgattacattaaattatgtcatttttt 10002204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 416 - 449
Target Start/End: Original strand, 8917542 - 8917575
Alignment:
Q  416 ggacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||| |||||||||||||||||||||||||    
T  8917542 ggacacatctgattacattcaattatgtcatttt 8917575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 6205233 - 6205265
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||| ||||||||||||||||||||||||    
T  6205233 gacacatgcgattacattcaattatgtcatttt 6205265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 16994092 - 16994060
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||||||||||||| |||||||||    
T  16994092 gacacatgtgattacattcaattctgtcatttt 16994060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 31548300 - 31548332
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||| ||||||||||||||    
T  31548300 gacacatgtgattacattgaattatgtcatttt 31548332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 31681837 - 31681869
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    ||||||||||||| |||||||||||||||||||    
T  31681837 gacacatgtgatttcattcaattatgtcatttt 31681869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 417 - 451
Target Start/End: Complemental strand, 27253337 - 27253303
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttttt 451  Q
    |||||||||||||||||||||||||| ||||||||    
T  27253337 gacacatgtgattacattcaattatgacatttttt 27253303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 451
Target Start/End: Original strand, 29200807 - 29200840
Alignment:
Q  418 acacatgtgattacattcaattatgtcatttttt 451  Q
    ||||||||||||||||||||||||||||| ||||    
T  29200807 acacatgtgattacattcaattatgtcatatttt 29200840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 645380 - 645352
Alignment:
Q  421 catgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||||    
T  645380 catgtgattacattcaattatgtcatttt 645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 10009878 - 10009846
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||| ||||||||||||||    
T  10009878 gacacatgtgattacattgaattatgtcatttt 10009846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Complemental strand, 59177 - 59145
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||||||||| ||||    
T  59177 gacacatgtgattacattcaattatgtcgtttt 59145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 417 - 449
Target Start/End: Original strand, 26787745 - 26787777
Alignment:
Q  417 gacacatgtgattacattcaattatgtcatttt 449  Q
    |||||||||||||||||||||| ||||||||||    
T  26787745 gacacatgtgattacattcaataatgtcatttt 26787777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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