View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_33 (Length: 466)
Name: NF8910_low_33
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 99 - 452
Target Start/End: Original strand, 28436960 - 28437305
Alignment:
| Q |
99 |
atccatatatataaatttggctttcttttatgcattaagatcatatgaaaaagacctctaaacccacctcatcacatccttttaatcacaatcacaagca |
198 |
Q |
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| T |
28436960 |
atccatatatataaatttggctttcttttatgcattaagatcatatgaaaaagacctctaaacccacctcatcacatccttttaataacaatcacaagca |
28437059 |
T |
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| Q |
199 |
tactacagtacctatcaagattcatctcaacaacacctttctcttcctctcctccaccaccaccatgcatcaaatcatatcatcattcaattactcctat |
298 |
Q |
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| T |
28437060 |
tactacagtacctatcaagattcatctcaacaacacctttctcttcctctcctccaccaccaccatgcatcaaatcatatcatcattcaactactcctat |
28437159 |
T |
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| Q |
299 |
cttccctttccataaagaaaaaccatctttttctctttttctctctgaaaattcattcaatggtggcaccaaatcacaaaaacacacaagatcatgaaaa |
398 |
Q |
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| T |
28437160 |
cttccctttccataaagaaaaacca--------tctttttctctctgaaaattcattcaatggtggcaccaaatcacaaaaacacacaagatcatgaaaa |
28437251 |
T |
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| Q |
399 |
ccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaat |
452 |
Q |
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| T |
28437252 |
ccaacaaggttcttcatcagaaaccaagataacagatcaacaaaaagttgtaat |
28437305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28436862 - 28436895
Alignment:
| Q |
1 |
aaaacttgtatagcagttatatatccctcattca |
34 |
Q |
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| T |
28436862 |
aaaacttgtatagcaattatatatccctcattca |
28436895 |
T |
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