View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8910_low_34 (Length: 462)
Name: NF8910_low_34
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_34 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
| [»] scaffold0290 (1 HSPs) |
| | |
|
| [»] scaffold0042 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 5 - 447
Target Start/End: Complemental strand, 32146662 - 32146224
Alignment:
| Q |
5 |
agtttgttcgattttcactttgtaggccaagaacaagaaaacatgaaaaaaggtgatacgaaaagtatacgggtccttggaacgaataggtgcataactt |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
32146662 |
agtttgttcgattttcattttgtaggccaagaacaagaaaacatgaaaaa-ggtgatacgaaaagtatatgggtccttggaacgaataggtgcataactt |
32146564 |
T |
|
| Q |
105 |
tttnnnnnnncattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgc |
204 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32146563 |
tttaaaaaaacattgtgaaactgagtccataacggtactgcaaaaccactggacgagtcaacacatttttagaaagttgtgcaactcaccccaagcccgc |
32146464 |
T |
|
| Q |
205 |
ctatggcgagacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgtttt |
304 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32146463 |
ctatggcgag---ttggctctgaagtttgcacgccttaaatgagtatactcgcttatagcgtgtttcatcagtttcagaaatgtggaaatatcatgtttt |
32146367 |
T |
|
| Q |
305 |
aaaaaataacttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaacatggttcaacaatattatagcaagtatcgttatcactta |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32146366 |
aaaaaataacttcgtttccaagtcccttaatacataccttaactctaggagtcataaaaacatggttcaacaatattatagcaagtatcgttatcactta |
32146267 |
T |
|
| Q |
405 |
acaagcatggcataagagggcataaatcacatcgtgtaaaact |
447 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32146266 |
acaagcatggcataagagggcatgaatcacatcgtgtaaaact |
32146224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 115 - 440
Target Start/End: Complemental strand, 1610 - 1289
Alignment:
| Q |
115 |
cattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
213 |
Q |
| |
|
|||||||||||| |||||| |||||||| || ||| || || |||||| ||||||| | ||||||||| ||||| || ||| || ||| |||| || |
|
|
| T |
1610 |
cattgtgaaacttagtccacgacggtactacagaaccacaggccgagtcgttacattttaaaaaagttgtggaactcgcctccaagcttgccaatggtga |
1511 |
T |
|
| Q |
214 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataa |
313 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||| ||| ||| |||| | | || |
|
|
| T |
1510 |
g---ttgactctgaagtttgcacgccttaagtgagtgtactcgcttatggcgtgtttcctcagtttcagaaatgt--aaaaatcgtgtcttaacata-aa |
1417 |
T |
|
| Q |
314 |
cttcgtttccaagtcccttaatacatacattaactctaggagtcataa-aaacatggttcaacaatattatagcaagtatcgttatcacttaacaagcat |
412 |
Q |
| |
|
||| ||||||||||| |||| || |||||||||| |||||||| || |||||||||||||||| || ||||||||| ||||||||||||||| || |
|
|
| T |
1416 |
tttcaattccaagtcccctaatgtgtatcttaactctagaagtcataagaagcatggttcaacaatatcatggcaagtatcattatcacttaacaagtat |
1317 |
T |
|
| Q |
413 |
ggcataagagggcataaatcacatcgtg |
440 |
Q |
| |
|
|||||||||| | || |||| ||||||| |
|
|
| T |
1316 |
ggcataagagagtatgaatcgcatcgtg |
1289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 115 - 422
Target Start/End: Complemental strand, 21333494 - 21333190
Alignment:
| Q |
115 |
cattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcacc-ccatgcccgcctatggcga |
213 |
Q |
| |
|
|||||||||||||||||||| | | |||| || ||| || |||||||||| ||||||| | ||||||||||||||| || ||| || ||| | || || |
|
|
| T |
21333494 |
cattgtgaaactgagtccatgatgatactacagaaccacaggacgagtcattacattttaaaaaagttgtgcaactcgcctccaagcttgccaaaggtga |
21333395 |
T |
|
| Q |
214 |
gacgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataa |
313 |
Q |
| |
|
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||| |||||||| || ||| ||| |||| | | || |
|
|
| T |
21333394 |
g---ttgactctgaagtttgcacgccttaagtgagtttactcgcttatggcgtgtttcctcaattttagaaatgt--caaaatcgtgtcttaacata-aa |
21333301 |
T |
|
| Q |
314 |
cttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaacaatattatagcaagtatcgttatcactt-aacaagca |
411 |
Q |
| |
|
||| ||||||||||| |||| | || |||||||||||||||||||||| ||| |||||||||||| || ||||||| ||||||||| |||||| | |
|
|
| T |
21333300 |
tttcaattccaagtcccctaatgcgtatcttaactctaggagtcataaaaagcatagttcaacaatatcatgtaaagtatcattatcacttaaacaagta |
21333201 |
T |
|
| Q |
412 |
tggcataagag |
422 |
Q |
| |
|
||||||||||| |
|
|
| T |
21333200 |
tggcataagag |
21333190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 435
Target Start/End: Original strand, 19078 - 19392
Alignment:
| Q |
115 |
cattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
214 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| || | ||||||||||||||||| || |||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
19078 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacacatttt-aggaagttgtgcaactcgccccaaactcgctcatggcgag |
19176 |
T |
|
| Q |
215 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataac |
314 |
Q |
| |
|
||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| | ||| ||| ||||||| | | ||| |
|
|
| T |
19177 |
---ttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaatat--aaaaatcgtgttttatcata-aac |
19270 |
T |
|
| Q |
315 |
ttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaacaatattatagcaagtatcgttatcacttaacaagcatg |
413 |
Q |
| |
|
||| || ||||| | |||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
19271 |
ttcaattacaagttctctaatgcatatcttaactctaggagtcataaaaatcatggttcaacaatattatggcaagtatcattatcacttaacaagcata |
19370 |
T |
|
| Q |
414 |
gcataagagggcataaatcaca |
435 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
19371 |
acataagagggtatgaatcaca |
19392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 435
Target Start/End: Complemental strand, 14820634 - 14820320
Alignment:
| Q |
115 |
cattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
214 |
Q |
| |
|
||||||||||||||||||||||| | |||||| ||| || | ||||||||||||||||| || |||||||||||||| ||||| | ||| |||||||| |
|
|
| T |
14820634 |
cattgtgaaactgagtccataacagcactgcagaaccacagaacgagtcaacacatttt-aggaagttgtgcaactcgccccaaactcgctcatggcgag |
14820536 |
T |
|
| Q |
215 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataac |
314 |
Q |
| |
|
||||||||| ||| | || || ||||| ||||||||||||||| ||||| |||| ||||||| |||||| | ||| ||| ||||||| | | ||| |
|
|
| T |
14820535 |
---ttggctctggagtatacacgctttaagcgagtttactcgcttacggcgtatttcttcagtttgagaaatat--aaaaatcgtgttttatcata-aac |
14820442 |
T |
|
| Q |
315 |
ttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaacaatattatagcaagtatcgttatcacttaacaagcatg |
413 |
Q |
| |
|
||| || ||||| | |||| |||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
14820441 |
ttcaattacaagttctctaatgcatatcttaactctaggagtcataaaaatcatggttcaacaatattatggcaagtatcattatcacttaacaagcata |
14820342 |
T |
|
| Q |
414 |
gcataagagggcataaatcaca |
435 |
Q |
| |
|
|||||||||| || ||||||| |
|
|
| T |
14820341 |
acataagagggtatgaatcaca |
14820320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 255 - 340
Target Start/End: Complemental strand, 14278278 - 14278194
Alignment:
| Q |
255 |
cgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataacttcgtttccaagtcccttaatacata |
340 |
Q |
| |
|
|||||| | ||||||||||| ||||||| ||||| |||||||||||||| ||| | ||||||||||||||||||| || |||||| |
|
|
| T |
14278278 |
cgcttacgacgtgtttcatcggtttcaggaatgta-aaatatcatgtttttaaagaaaacttcgtttccaagtcccctactacata |
14278194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 115 - 427
Target Start/End: Complemental strand, 12058998 - 12058693
Alignment:
| Q |
115 |
cattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgag |
214 |
Q |
| |
|
||||||||||||||| ||| |||||||| | ||| || ||||||||||| |||| || | ||||||||| |||| ||||| || | || |||||||| |
|
|
| T |
12058998 |
cattgtgaaactgagctcatgacggtactttagaaccacaggacgagtcaatacatcttgaaaaagttgtgtgactcgccccaagctccccaatggcgag |
12058899 |
T |
|
| Q |
215 |
acgttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataac |
314 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| | || || ||| ||| |||| | | | |
|
|
| T |
12058898 |
---ttggctctggagtttgcacgccttaagtgagtttactcgcttatggcgtgttgcatcagtttcagaga--tgcaagaatcgtgtcttaacata-att |
12058805 |
T |
|
| Q |
315 |
ttcgtttccaagtcccttaatacatacattaactctaggagtcataaaaacatggttcaacaatattatagcaagtatcgttatcacttaacaagcatgg |
414 |
Q |
| |
|
||| ||||||||||| |||| || |||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12058804 |
ttcaattccaagtccc-caatatgtatcttaactctaggactcataaaatcatggtccgacaatattatagcaagtatcgttatcacttaacaagcatga |
12058706 |
T |
|
| Q |
415 |
cataagagggcat |
427 |
Q |
| |
|
||||||||||||| |
|
|
| T |
12058705 |
cataagagggcat |
12058693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 68 - 364
Target Start/End: Original strand, 23457127 - 23457423
Alignment:
| Q |
68 |
agtatacgggtccttggaacgaataggtgcataactttttnnnnnnncattgtgaaactgagtccataacggtactgcaaaacaactggacgagtcaaca |
167 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |||| || | |||||||||||||||||| | | | ||| || |||||||||| | |
|
|
| T |
23457127 |
agtatatgggtccttggaacgaataggtgcatagtcttttaaaagaatatcctaaaactgagtccataacggcgccgtagaaccacaggacgagtcacta |
23457226 |
T |
|
| Q |
168 |
catttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttggctctg----aagtttgcatgccttaagtgagtttactcgcttatgg |
263 |
Q |
| |
|
|||||| | |||||||| |||||| ||||| || |||| ||| ||| |||||||||| ||||||||| | |||||||||| || |||||||| |
|
|
| T |
23457227 |
cattttga-aaagttgtacaactcgccccaagctcgccaatgacga---gttggctctgaattaagtttgcacgtcttaagtgagcttgctcgcttacaa |
23457322 |
T |
|
| Q |
264 |
cgtgtttcatcagtttcagaaatgt-ggaaatatcatgttttaaaaaataacttcgtttccaagtcccttaatacatacattaactctaggagtcataaa |
362 |
Q |
| |
|
|||||||||| ||||| ||| | | |||||||||||||||||| | |||||| |||||||||||| |||||| | || ||||||||||| ||||| |
|
|
| T |
23457323 |
cgtgtttcatgggtttcggaattataaaaaatatcatgttttaaaata-aacttcttttccaagtcccacaatacacatcttgactctaggagttataaa |
23457421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 121 - 446
Target Start/End: Complemental strand, 15559799 - 15559479
Alignment:
| Q |
121 |
gaaactgagtccataacggtactgcaaaacaactggacgagtcaacacatttttagaaagttgtgcaactcaccccatgcccgcctatggcgagacgttg |
220 |
Q |
| |
|
|||||||||||||| |||| ||| |||||| || ||||||| ||| ||||||| | |||||||||| |||| ||||| || |||| ||||| || ||| |
|
|
| T |
15559799 |
gaaactgagtccatgacggcactacaaaaccacaggacgaggcaatacattttgaaaaagttgtgcgactcgccccaagctcgccaatggctag---ttg |
15559703 |
T |
|
| Q |
221 |
gctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataacttcgtt |
320 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||| |||||||| ||||||||||||||| || ||| || ||||||| | | || || | |
|
|
| T |
15559702 |
gctctggagtttgcacgccttaagtgagtttactcgcttacggcgtgttccatcagtttcagaaa--tgcaaaagtcgagttttaacata-aatctcaat |
15559606 |
T |
|
| Q |
321 |
tccaagtcccttaatacatacattaactctaggagtcataaaaa-catggttcaacaatattatagcaagtatcgttatcacttaacaagcatggcataa |
419 |
Q |
| |
|
|||| ||||| |||| | ||| |||| ||| |||| | |||||| ||| | || |||||||| ||||||||| |||||| ||||| |||||||||||| |
|
|
| T |
15559605 |
tccatgtcccctaatgcctaccttaaatcttggagccctaaaaatcattgcgcattaatattatggcaagtatcattatcatttaacgagcatggcataa |
15559506 |
T |
|
| Q |
420 |
gagggcataaatcacatcgtgtaaaac |
446 |
Q |
| |
|
||||| || ||||||||| || ||||| |
|
|
| T |
15559505 |
gagggtatgaatcacatcttgcaaaac |
15559479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 261 - 432
Target Start/End: Complemental strand, 2904 - 2736
Alignment:
| Q |
261 |
tggcgtgtttcatcagtttcagaaatgtggaaatatcatgttttaaaaaataacttcgtttccaagtcccttaatacatacattaactctaggagtcata |
360 |
Q |
| |
|
||||||||||||||||||||| ||||| ||| |||| ||||||| | ||| ||| |||||||| | |||| |||| ||| | |||||||| ||| |
|
|
| T |
2904 |
tggcgtgtttcatcagtttcaaaaatgc--aaaaatcaggttttaacat-taaattcaattccaagttctctaatgcatatcttaccgctaggagttata |
2808 |
T |
|
| Q |
361 |
aaaacatggttcaacaatattatagcaagtatcgttatcacttaacaagcatggcataagagggcataaatc |
432 |
Q |
| |
|
||| || || |||||| ||| | ||||||||| ||||||||||| ||||||||||||||| || ||||||| |
|
|
| T |
2807 |
aaatcaccgtacaacaacattgtggcaagtatcattatcacttaaaaagcatggcataagaaggtataaatc |
2736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 7511 - 7477
Alignment:
| Q |
72 |
tacgggtccttggaacgaataggtgcataactttt |
106 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7511 |
tacgggttcttggaacgaataggtgcataactttt |
7477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 15593289 - 15593219
Alignment:
| Q |
217 |
gttggctctgaagtttgcatgccttaagtgagtttactcgcttatggcgtgtttcatcagtttcagaaatg |
287 |
Q |
| |
|
||||||| || ||||| || || ||||| ||||||||| |||||||||||||||| | |||| |||||||| |
|
|
| T |
15593289 |
gttggctttggagtttacacgctttaagcgagtttacttgcttatggcgtgtttctttagttccagaaatg |
15593219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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