View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_36 (Length: 457)

Name: NF8910_low_36
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_36
NF8910_low_36
[»] chr5 (2 HSPs)
chr5 (1-307)||(32928391-32928700)
chr5 (331-439)||(32928733-32928836)
[»] chr3 (1 HSPs)
chr3 (234-307)||(53247436-53247509)
[»] chr2 (1 HSPs)
chr2 (234-307)||(489416-489489)
[»] chr1 (2 HSPs)
chr1 (234-308)||(41612825-41612899)
chr1 (234-307)||(46750931-46751004)
[»] chr7 (1 HSPs)
chr7 (234-307)||(40448476-40448549)
[»] chr4 (3 HSPs)
chr4 (234-307)||(1483054-1483127)
chr4 (234-307)||(3222588-3222661)
chr4 (5-72)||(1483268-1483335)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 32928391 - 32928700
Alignment:
Q  1 aagaaatggcgttaggaaaacagggtgaacccattagcattgctgactgtaacggagttggacccatgttgtattgtgtgatnnnnnnnnnnnnnnnnn- 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                       
T  32928391 aagaaatggcgttaggaaaacagggtgaacccattagcattgctgactgtaacggagttggacccatgttgtattgtgtgaagaagaagaagaagaagaa 32928490  T
Q  100 --tgactagggttcgaatccctccttgaactgtaaattttaatctattaataattctattttttcagcatgatcgcgctcgctcgctacgatgaagaaaa 197  Q
      |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||  || ||||||||||||||||||||||| | ||    
T  32928491 gatgactagggttcgaatccctccttgaactgtaaattttaatctattaataattcaattttttcagtgtgttcgcgctcgctcgctacgatgaaaacaa 32928590  T
Q  198 tatatattcagaaaacgagaaaacaacagnnnnnnngaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactccc 297  Q
    ||||||| |||||||||||||||||  ||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32928591 tatatatacagaaaacgagaaaacagaagaaaaaaggaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactccc 32928690  T
Q  298 actgtggtcg 307  Q
    ||||||||||    
T  32928691 actgtggtcg 32928700  T

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Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 331 - 439
Target Start/End: Original strand, 32928733 - 32928836
Alignment:
Q  331 atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatccttataaaataaaattatcaacatttgtgttatgaa 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  32928733 atacaatctaactattaatctacttatttgcttttaaaataaaggttaaatgtttgtttaaatcctt-----ataaaattatcaacatttgtgttatgaa 32928827  T
Q  431 tatatgtat 439  Q
    |||||||||    
T  32928828 tatatgtat 32928836  T

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Target: chr3 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 53247436 - 53247509
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53247436 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 53247509  T

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Target: chr2 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 489489 - 489416
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  489489 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 489416  T

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Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 41612825 - 41612899
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcgt 308  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  41612825 gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcgt 41612899  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 46750931 - 46751004
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    |||||||||  ||||| |||||| | || |||||| |||||| ||||||||||||| |||||||||||||||||    
T  46750931 gaccgcataatgcagtagattagtgtgtttgactttggatcaaaaggtcgtgggtttgactcccactgtggtcg 46751004  T

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Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 40448476 - 40448549
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  40448476 gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg 40448549  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 1483127 - 1483054
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  1483127 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactaccattgtggtcg 1483054  T

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Target: chr4; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 234 - 307
Target Start/End: Original strand, 3222588 - 3222661
Alignment:
Q  234 gaccgcatagcgcagtggattagcgcgtctgacttcggatcagaaggtcgtgggttcgactcccactgtggtcg 307  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  3222588 gaccgcatagcgcagtggattagcgcgtttgacttcggatcaaaaggtcgtgggttcgactcccactgtggtcg 3222661  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 1483335 - 1483268
Alignment:
Q  5 aatggcgttaggaaaacagggtgaacccattagcattgctgactgtaacggagttggacccatgttgt 72  Q
    ||||| ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1483335 aatggagtttggaaaacaaggtgaacccattagcatcgctgactgtaacggagttggacccatgttgt 1483268  T

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