View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_37 (Length: 446)
Name: NF8910_low_37
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_37 |
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Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 15 - 436
Target Start/End: Original strand, 7699223 - 7699643
Alignment:
| Q |
15 |
tcactagtaactatgacataataaatattaataaattgtccaaactccaaactcttcctacccaataatttgttataannnnnnncatcaattgattcta |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
7699223 |
tcactagtaactatgacataataaatattaataaattgtccaaactccaaactcttcctacccaataatttgtcataatttttttcatcaattgattcta |
7699322 |
T |
|
| Q |
115 |
taacatagcaaccataatcagcaattctcactctctattttagaatcaccaaccaattatacagttataatcgataaagcacagacataaacaagtacac |
214 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7699323 |
taacatagcaaccataatcagaaattctgactctctattttagaatcaccaaccaattatacagttataatcaataaagcacagacataaacaagtacac |
7699422 |
T |
|
| Q |
215 |
tagacgcgatactggcatataaacacatgcaatagtttgagaaattgaaagtgatcgaatgtaaccacatttgtcggtgtcgtgtcagacacaccttcaa |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
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| T |
7699423 |
tagacgcgatactggcatataaacacatgcaatagtttgagaaattgaaagtgatcgaatgtaaccacatttgtc-gtgtcgtgtcagacacgccttcaa |
7699521 |
T |
|
| Q |
315 |
gttcaacatgaagtatcagtactacatatgtaacattgattaaagggattaggcaaattatatccagtgtcagcatatctaaactgctaacacttctgat |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7699522 |
gttcaacatgaagtatcagtactacatatgtaacattgattaaagggattaggcaaattatatccagtgtcagcatatctaaactgctaacacttctgaa |
7699621 |
T |
|
| Q |
415 |
aagtatgttcagtgtccaacac |
436 |
Q |
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||||||||||||||||| |||| |
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|
| T |
7699622 |
aagtatgttcagtgtccgacac |
7699643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 52738996 - 52738955
Alignment:
| Q |
258 |
attgaaagtgatcgaatgtaaccacatttgtcggtgtcgtgt |
299 |
Q |
| |
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|||||||||||| |||||||||||||| |||| ||||||||| |
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|
| T |
52738996 |
attgaaagtgattgaatgtaaccacatgtgtcagtgtcgtgt |
52738955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 299
Target Start/End: Original strand, 22402410 - 22402446
Alignment:
| Q |
263 |
aagtgatcgaatgtaaccacatttgtcggtgtcgtgt |
299 |
Q |
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||||||| |||||||||||||| |||||||||||||| |
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| T |
22402410 |
aagtgattgaatgtaaccacatgtgtcggtgtcgtgt |
22402446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 8806011 - 8805965
Alignment:
| Q |
245 |
aatagtttgagaaattgaaagtgatcgaatgtaaccacatttgtcgg |
291 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||| |||||| |
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|
| T |
8806011 |
aataatttgagaaattgaaagtgattgaatgaaaccacatgtgtcgg |
8805965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 299
Target Start/End: Complemental strand, 33531442 - 33531409
Alignment:
| Q |
266 |
tgatcgaatgtaaccacatttgtcggtgtcgtgt |
299 |
Q |
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||||||||||||||||||| |||||||||||||| |
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|
| T |
33531442 |
tgatcgaatgtaaccacatgtgtcggtgtcgtgt |
33531409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 7086411 - 7086455
Alignment:
| Q |
245 |
aatagtttgagaaattgaaagtgatcgaatgtaaccacatttgtc |
289 |
Q |
| |
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|||| |||||||||||||||||||| ||||| |||||||| |||| |
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|
| T |
7086411 |
aataatttgagaaattgaaagtgatggaatgaaaccacatgtgtc |
7086455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 34443094 - 34443050
Alignment:
| Q |
245 |
aatagtttgagaaattgaaagtgatcgaatgtaaccacatttgtc |
289 |
Q |
| |
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|||| ||||||||| |||||||||| |||||||||||||| |||| |
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| T |
34443094 |
aataatttgagaaagtgaaagtgattgaatgtaaccacatgtgtc |
34443050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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