View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8910_low_39 (Length: 438)
Name: NF8910_low_39
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_39 |
 | |
|
| [»] scaffold0022 (2 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 218 - 424
Target Start/End: Complemental strand, 23924437 - 23924231
Alignment:
| Q |
218 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924437 |
aaactaaacacaaaatatatagttgtgtctttgaagcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagtt |
23924338 |
T |
|
| Q |
318 |
gttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactct |
417 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924337 |
gttcatctctatttttagccttttcagctgaagtagaaaagctagaagaagacttgtagtgttatacctgtttaaatagtttgacttgcttgtaaactct |
23924238 |
T |
|
| Q |
418 |
attttga |
424 |
Q |
| |
|
||||||| |
|
|
| T |
23924237 |
attttga |
23924231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 23924613 - 23924456
Alignment:
| Q |
11 |
atggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23924613 |
atggacatcaacatgtatgtcctagtactattctagctatttcatgctttttactcctttcttgagttttagaattctaagatattcattgctattgagt |
23924514 |
T |
|
| Q |
111 |
caaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23924513 |
caaaataaaatgctactaaaaggccagaattgtagacttatacgtatgactaattgtt |
23924456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 252 - 424
Target Start/End: Original strand, 10642224 - 10642396
Alignment:
| Q |
252 |
agcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagt |
351 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10642224 |
agcatattgaggatccagtccaggagcatgcaaaaggggttgatcagagtatcggtgaggtaagttgttcatctctatttttagccttttcagctgaagt |
10642323 |
T |
|
| Q |
352 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactctattttga |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10642324 |
agaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgacttgcttgtaaactctattttga |
10642396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 297 - 424
Target Start/End: Complemental strand, 32713560 - 32713433
Alignment:
| Q |
297 |
agagtattggtgaggtaagttgttcatctctatctttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32713560 |
agagtattggtgaggtaagttgttcatctctatttttagccttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatag |
32713461 |
T |
|
| Q |
397 |
tttgacttgcttgtaaactctattttga |
424 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
32713460 |
tttgacttgcttgtaaactctattttga |
32713433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 336
Target Start/End: Original strand, 10642187 - 10642226
Alignment:
| Q |
297 |
agagtattggtgaggtaagttgttcatctctatctttagc |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
10642187 |
agagtattggtgaggtaagttgttcatctctatttttagc |
10642226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 143; Significance: 6e-75; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 34 - 176
Target Start/End: Complemental strand, 11845593 - 11845451
Alignment:
| Q |
34 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845593 |
agtactattctagctatttcatgctttttactcctttcttgagttctagaattctaagatattcattgctattgagtcaaaataaaatgctactaaaagg |
11845494 |
T |
|
| Q |
134 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11845493 |
ccagaattgtagacttatacgtatgactaattgttgttataaa |
11845451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 88860 - 88941
Alignment:
| Q |
224 |
aacacaaaatatatagttgtgtctttgaagcatattgaggatccaatccaggagcatgcaaaaggggttgatcagagtattg |
305 |
Q |
| |
|
|||||| || |||||| |||||||||| | ||| |||||||||| | ||||||||||||||||||||||| ||||||||| |
|
|
| T |
88860 |
aacacagaagatatagctgtgtctttggatcatgttgaggatcccactgaggagcatgcaaaaggggttgataagagtattg |
88941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 88991 - 89056
Alignment:
| Q |
338 |
ttttcagctgaagtagaaaagctagaagcagacttgtagtgctatacctgtttaaatagtttgact |
403 |
Q |
| |
|
||||||| |||| ||||||||||||||| ||||| ||||||||||| |||||| || ||||||||| |
|
|
| T |
88991 |
ttttcaggtgaaatagaaaagctagaagtagactcgtagtgctataactgttttaacagtttgact |
89056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University