View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_4 (Length: 704)

Name: NF8910_low_4
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_4
NF8910_low_4
[»] chr2 (3 HSPs)
chr2 (19-686)||(7395803-7396471)
chr2 (616-686)||(7384918-7384988)
chr2 (598-668)||(11312050-11312120)
[»] chr4 (1 HSPs)
chr4 (598-686)||(28874098-28874186)
[»] chr1 (3 HSPs)
chr1 (596-683)||(26028689-26028776)
chr1 (598-683)||(26023374-26023459)
chr1 (598-661)||(18188307-18188366)
[»] chr8 (3 HSPs)
chr8 (598-686)||(10733938-10734026)
chr8 (598-686)||(10738970-10739058)
chr8 (598-659)||(17909748-17909809)
[»] chr5 (4 HSPs)
chr5 (593-683)||(19699340-19699430)
chr5 (598-683)||(28663758-28663843)
chr5 (596-661)||(17935460-17935525)
chr5 (598-636)||(17945750-17945788)
[»] chr6 (3 HSPs)
chr6 (593-680)||(23600089-23600176)
chr6 (613-683)||(17190645-17190715)
chr6 (598-636)||(11302142-11302180)
[»] scaffold0248 (1 HSPs)
scaffold0248 (598-683)||(16078-16163)
[»] scaffold0081 (1 HSPs)
scaffold0081 (624-683)||(7791-7850)
[»] chr3 (1 HSPs)
chr3 (613-683)||(7117225-7117295)


Alignment Details
Target: chr2 (Bit Score: 629; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 629; E-Value: 0
Query Start/End: Original strand, 19 - 686
Target Start/End: Complemental strand, 7396471 - 7395803
Alignment:
Q  19 ctctttactatccatataaggcttttgtacagattaattaacatcttctgaagtaatcaaatttttgttttaagtcatgatgtcttttagtacattattt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7396471 ctctttactatccatataaggcttttgtacagattaattaacatcttctgaagtaatcaaatttttgttttaagtcatgatgtcttttagtacattattt 7396372  T
Q  119 tcaaaattatggggctttttatctgaggaaagatataaatgaaagatcttagagttcttagaacactccctatagaaatataatggaagatagttaaaca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7396371 tcaaaattatggggctttttatctgaggaaagatataaatgaaagatcttagagttcttagaacactccctatagaaatataatgaaagatagttaaaca 7396272  T
Q  219 tttatgtagatgcaggatctgatctagacagaatgtctgggagcagtggtgttataaggtaattaaaggtagacagaatgtcttgatttatgcatatttt 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7396271 tttatgtagatgcaggatctgatctagacagaatgtctgggagcagtggtgttataaggtaattaaaggtagacagaatgtcttgatttatgcatatttt 7396172  T
Q  319 ctagaaacactcatttgttattattatgatattcaaaatttgaaagggacaaggctactgatacaaaacgaggaagtactatgaaaggtcaaggatgatg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7396171 ctagaaacactcatttgttattattatgatattcaaaatttgaaagggacaaggctactgatacaaaacgaggaagtgctatgaaaggtcaaggatgatg 7396072  T
Q  419 tcatgaaagttttattatgatgctcaggtcctgttttggtctacatgtaaaataattgtcaaaatcatagacacgtgcagcttatgaatgatggccgcaa 518  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7396071 tcatgaaagttttattatgatgctcaggtcctgttttggtctacatgtaaaataattgtcaaaatcatagacacgtgcagcttatgaatgatggccgcaa 7395972  T
Q  519 tagattttgaacatgatttagagctgatgg-attataaaattctttcctagcttagaattcatttagaacatgaagactattatgaataaatgaaaatat 617  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7395971 tagattttgaacatgatttagagctgatggtattataaaattctttcctggcttagaattcatttagaacatgaagactgttatgaataaatgaaaatat 7395872  T
Q  618 gacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttattgat 686  Q
    || ||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||    
T  7395871 gatgtggatgtccattgtccctagaccttctatattccttaactactatgattaaatgactttattgat 7395803  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 616 - 686
Target Start/End: Complemental strand, 7384988 - 7384918
Alignment:
Q  616 atgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttattgat 686  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  7384988 atgatgtggatgtccattgtccctagaccttctatatttcttaactaatatgactaaatgactttattgat 7384918  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 598 - 668
Target Start/End: Original strand, 11312050 - 11312120
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatga 668  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||||||||  |||||||| |||||    
T  11312050 ttatgaataaatgaaaatatgatgtggatgtacattgtccctagaccttctatatcccttaactactatga 11312120  T

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Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 28874098 - 28874186
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttattgat 686  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| ||||||||||    
T  28874098 ttatgaataaatgaaaatatgatgtggatgtccattatccctagaccttctatatttcttaactattatgactaaatgactttattgat 28874186  T

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Target: chr1 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 596 - 683
Target Start/End: Original strand, 26028689 - 26028776
Alignment:
Q  596 tattatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| |||||||    
T  26028689 tattatgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattccttaactattatgactaaatgactttatt 26028776  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 26023374 - 26023459
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| ||||| |||||| |||||||    
T  26023374 ttatgaataaatgaaaatatgatgtggatgtccattgtctctagaccttctatattccttaactactatgactaaatgactttatt 26023459  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 598 - 661
Target Start/End: Complemental strand, 18188366 - 18188307
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaact 661  Q
    |||||||||||||||||||||| | |||    |||||||||||||||||||||||| |||||||    
T  18188366 ttatgaataaatgaaaatatgatgggga----cattgtccctagaccttctatattccttaact 18188307  T

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Target: chr8 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 10733938 - 10734026
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttattgat 686  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||| |||||| ||||||||||    
T  10733938 ttatgaataaatgaaaatatgatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactttattgat 10734026  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 598 - 686
Target Start/End: Original strand, 10738970 - 10739058
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttattgat 686  Q
    |||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||| ||||| |||||| ||||||||||    
T  10738970 ttatgaataaatgaaaatattatgtggatgtccattgtccctagaccttctatattctttaactactatgactaaatgactttattgat 10739058  T

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Target: chr8; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 598 - 659
Target Start/End: Original strand, 17909748 - 17909809
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaa 659  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||| || |||||    
T  17909748 ttatgaataaatgaaaatatgatgtggatgtccattgtccctagcccttctattttccttaa 17909809  T

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Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 593 - 683
Target Start/End: Original strand, 19699340 - 19699430
Alignment:
Q  593 gactattatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    |||| ||||||||||||| |||||||| ||||||| |||||||||||||||||| |||||  |||||||| |||||||||||| |||||||    
T  19699340 gactgttatgaataaatgcaaatatgatgtggatgaccattgtccctagaccttatatatcccttaactactatgattaaatgcctttatt 19699430  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 598 - 683
Target Start/End: Complemental strand, 28663843 - 28663758
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    ||||||||||||||||||||||  ||||||||||||||||| |||||||||||||| |||||||| | ||| |||||| |||||||    
T  28663843 ttatgaataaatgaaaatatgatttggatgtccattgtccccagaccttctatattccttaactattgtgactaaatgactttatt 28663758  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 596 - 661
Target Start/End: Original strand, 17935460 - 17935525
Alignment:
Q  596 tattatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaact 661  Q
    |||||||||||||||||||||||| | |||||||||||||  |||||||||||||||| |||||||    
T  17935460 tattatgaataaatgaaaatatgatgcggatgtccattgtttctagaccttctatattccttaact 17935525  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 636
Target Start/End: Original strand, 17945750 - 17945788
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtc 636  Q
    ||||||||||| |||||||||| ||||||||||||||||    
T  17945750 ttatgaataaaggaaaatatgatgtggatgtccattgtc 17945788  T

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Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 593 - 680
Target Start/End: Complemental strand, 23600176 - 23600089
Alignment:
Q  593 gactattatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggcttt 680  Q
    |||| |||||||||||||||||||||| || ||||||||||||||||| |||||||||||  |||||||| ||||| |||||| ||||    
T  23600176 gactgttatgaataaatgaaaatatgatgtagatgtccattgtccctaaaccttctatatcccttaactactatgactaaatgacttt 23600089  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 613 - 683
Target Start/End: Original strand, 17190645 - 17190715
Alignment:
Q  613 aatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    ||||||| ||||||||||||| ||||||||| ||||||||  |||||||| ||||| |||||| |||||||    
T  17190645 aatatgatgtggatgtccattttccctagactttctatatcccttaactactatgactaaatgactttatt 17190715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 598 - 636
Target Start/End: Original strand, 11302142 - 11302180
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtc 636  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  11302142 ttatgaataaatgaaaatatgatgtggatgttcattgtc 11302180  T

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Target: scaffold0248 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 598 - 683
Target Start/End: Original strand, 16078 - 16163
Alignment:
Q  598 ttatgaataaatgaaaatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    |||||||||||||||||||||| |||||||| ||||||| ||| ||||||||||||  ||||||| ||||| |||||| |||||||    
T  16078 ttatgaataaatgaaaatatgatgtggatgtacattgtctctataccttctatattctttaactactatgactaaatgactttatt 16163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 624 - 683
Target Start/End: Original strand, 7791 - 7850
Alignment:
Q  624 gatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    |||||||||| ||||||||| ||||||||  |||||||  ||||| ||||||||||||||    
T  7791 gatgtccattttccctagactttctatatcccttaactcctatgagtaaatggctttatt 7850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 683
Target Start/End: Complemental strand, 7117295 - 7117225
Alignment:
Q  613 aatatgacgtggatgtccattgtccctagaccttctatatttcttaactagtatgattaaatggctttatt 683  Q
    ||||||| ||||||||||||| |||||||||||| |||||  ||||| |  ||||| |||||| |||||||    
T  7117295 aatatgatgtggatgtccattttccctagaccttttatatcccttaatttctatgactaaatgtctttatt 7117225  T

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