View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_44 (Length: 397)
Name: NF8910_low_44
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 42529912 - 42529527
Alignment:
| Q |
1 |
cagtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataat |
100 |
Q |
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| T |
42529912 |
cagtgagatgaaacccaaaactttaatcaaattatcacaaaggtatcaacatgtcaaccacacccatgaccataatactactcatatatagctcaataat |
42529813 |
T |
|
| Q |
101 |
gaaacccctataaattagctggaataatagctgcgagtagcagaatatataatcaaaagaaatgtctaatcagttaattcatatcatttaggggtgtggg |
200 |
Q |
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| T |
42529812 |
gaaacccctataaattagctggaataatagctgcaagtagcagaatatataatcgaaagaaatgtctaatcagttaattcatatcatttaggggtgtggg |
42529713 |
T |
|
| Q |
201 |
gaagtgatgttaatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaa |
300 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529712 |
gaagtgatgttgatcaaccagtaatagttatggcagcagatggagaatgtatgaacatgtagatgataaattaactgtcaataactagaagctagttgaa |
42529613 |
T |
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| Q |
301 |
atactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctggaggtttgatgtcca |
386 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42529612 |
atactgctagaacatataattggttcaaattggaaggtatggaggcgtgctaattctataacaatgggctagaggtttgatgtcca |
42529527 |
T |
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