View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_47 (Length: 391)
Name: NF8910_low_47
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 49125815 - 49126194
Alignment:
| Q |
1 |
catcatctgcttcctttgaaatgtgtacttgttgccacatttattacattttctgttacttgtagaaaacaaggcaatgatttggtttaaatataattta |
100 |
Q |
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| T |
49125815 |
catcatctgcttcctttgaaatttgtacttgttgccacatttattacattttctgttacccgtagaaaacaaggcaatgatttggtttaaatataattta |
49125914 |
T |
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| Q |
101 |
catggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatag |
200 |
Q |
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| T |
49125915 |
catggatgttatttattatgactgatttaatcatgaaagactccagctaataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatag |
49126014 |
T |
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| Q |
201 |
tgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatttaagtccctcgca |
300 |
Q |
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| T |
49126015 |
tgaataatatagttacatgtttccttgaatgccttcatggccgagttgtgaaacaattttcgtgacatccaacattattccatgatttaagtccctcgca |
49126114 |
T |
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| Q |
301 |
atatcataaattttgttattgctgctcagtttttcatctcacttttgaaaaggtgtcaactccgatccatgtagccaact |
380 |
Q |
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| T |
49126115 |
atatcataaattttgttattgctgctcagtttttcatctcgcttttgaaaaggtgtcaactccgatccatgtagccaact |
49126194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 148 - 224
Target Start/End: Original strand, 37664387 - 37664463
Alignment:
| Q |
148 |
taataaattaaccaactaacaagtgtctttgtcggaaaacttggagggtatagtgaataatatagttacatgtttcc |
224 |
Q |
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|||| |||||||||| |||||| | |||||||| |||| | ||| || ||||||||||||| ||||||||||||| |
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| T |
37664387 |
taatgaattaaccaattaacaaatatctttgtcagaaatcacagagcgtgtagtgaataatatggttacatgtttcc |
37664463 |
T |
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