View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_53 (Length: 352)

Name: NF8910_low_53
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_53
NF8910_low_53
[»] chr2 (4 HSPs)
chr2 (1-335)||(45244923-45245258)
chr2 (1-264)||(1037573-1037837)
chr2 (65-140)||(44575529-44575604)
chr2 (202-239)||(43277394-43277431)
[»] chr3 (5 HSPs)
chr3 (1-254)||(51113700-51113954)
chr3 (1-253)||(13470652-13470905)
chr3 (1-239)||(51764374-51764613)
chr3 (1-240)||(51120826-51121066)
chr3 (1-114)||(514788-514901)
[»] chr6 (23 HSPs)
chr6 (5-254)||(6402790-6403040)
chr6 (9-254)||(6585156-6585402)
chr6 (1-254)||(7119083-7119337)
chr6 (1-254)||(7131561-7131815)
chr6 (3-120)||(6603256-6603373)
chr6 (1-254)||(6432087-6432341)
chr6 (1-254)||(6594525-6594779)
chr6 (1-254)||(14820619-14820873)
chr6 (1-254)||(6394790-6395044)
chr6 (1-174)||(6409932-6410106)
chr6 (1-254)||(6415892-6416146)
chr6 (3-100)||(19632367-19632464)
chr6 (65-243)||(11936205-11936384)
chr6 (65-243)||(11948185-11948364)
chr6 (2-254)||(7994101-7994354)
chr6 (1-146)||(14818308-14818453)
chr6 (1-254)||(6426437-6426691)
chr6 (1-146)||(10579764-10579910)
chr6 (70-144)||(14802331-14802405)
chr6 (12-114)||(9411292-9411394)
chr6 (61-178)||(6423203-6423321)
chr6 (1-253)||(6589243-6589496)
chr6 (154-253)||(8913904-8914003)
[»] chr4 (35 HSPs)
chr4 (1-248)||(546839-547087)
chr4 (1-243)||(553405-553648)
chr4 (1-253)||(53761692-53761942)
chr4 (1-239)||(1524420-1524656)
chr4 (1-264)||(55908637-55908901)
chr4 (3-146)||(640843-640986)
chr4 (1-146)||(55505136-55505278)
chr4 (68-167)||(1548430-1548530)
chr4 (65-239)||(3438500-3438674)
chr4 (65-119)||(558488-558542)
chr4 (65-173)||(1513407-1513516)
chr4 (2-174)||(1537766-1537939)
chr4 (1-172)||(8184031-8184203)
chr4 (1-172)||(12121458-12121630)
chr4 (65-238)||(659701-659873)
chr4 (5-146)||(1517524-1517665)
chr4 (8-144)||(1552797-1552936)
chr4 (1-113)||(370846-370958)
chr4 (68-243)||(566182-566358)
chr4 (65-230)||(570341-570507)
chr4 (3-100)||(7225957-7226054)
chr4 (65-120)||(1508057-1508112)
chr4 (2-264)||(8187000-8187263)
chr4 (8-173)||(1489361-1489527)
chr4 (5-166)||(1495926-1496088)
chr4 (103-264)||(1600447-1600609)
chr4 (183-243)||(644939-644999)
chr4 (89-172)||(1519143-1519227)
chr4 (200-264)||(1533899-1533963)
chr4 (206-253)||(558630-558677)
chr4 (200-254)||(641041-641095)
chr4 (201-247)||(7225809-7225855)
chr4 (220-264)||(1495831-1495875)
chr4 (203-255)||(1528121-1528173)
chr4 (68-120)||(7307853-7307905)
[»] chr8 (9 HSPs)
chr8 (1-264)||(18315182-18315446)
chr8 (2-167)||(27922435-27922601)
chr8 (58-119)||(32151284-32151345)
chr8 (1-165)||(34936171-34936336)
chr8 (8-110)||(44736468-44736570)
chr8 (67-253)||(17636317-17636508)
chr8 (65-243)||(28246225-28246402)
chr8 (202-253)||(34936083-34936134)
chr8 (61-146)||(17628042-17628127)
[»] chr7 (5 HSPs)
chr7 (1-146)||(15092179-15092324)
chr7 (3-254)||(10614521-10614773)
chr7 (4-110)||(10170145-10170251)
chr7 (4-110)||(10177670-10177776)
chr7 (187-255)||(7977691-7977759)
[»] chr1 (5 HSPs)
chr1 (2-120)||(7554415-7554533)
chr1 (16-254)||(19468418-19468657)
chr1 (1-146)||(9586565-9586710)
chr1 (76-146)||(52082582-52082652)
chr1 (1-116)||(9580995-9581110)
[»] scaffold0295 (1 HSPs)
scaffold0295 (1-264)||(533-797)
[»] scaffold0041 (1 HSPs)
scaffold0041 (2-126)||(39111-39235)
[»] chr5 (7 HSPs)
chr5 (2-238)||(32267402-32267636)
chr5 (11-239)||(41889488-41889717)
chr5 (5-171)||(41901537-41901704)
chr5 (1-146)||(20478110-20478255)
chr5 (65-119)||(37937877-37937931)
chr5 (65-167)||(38267562-38267665)
chr5 (3-44)||(17205527-17205568)
[»] scaffold0014 (2 HSPs)
scaffold0014 (67-114)||(88831-88878)
scaffold0014 (201-238)||(88943-88980)
[»] scaffold0807 (1 HSPs)
scaffold0807 (82-248)||(1389-1559)


Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 45245258 - 45244923
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245258 tgtgcaattttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 45245159  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45245158 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 45245059  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatgccgtataaattattcaaatcaagtacttgcgaatc 299  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  45245058 ctaagtttaaatgcctaatgttacaacatctccttaaaacatgacacattccttctccagttatgccgtataaattattcaaatcaagcacttgcaaatc 45244959  T
Q  300 ggggaagcaatcagcgatgagcaacaagtgagggat 335  Q
    ||||||||||||||||||||||||||||||||||||    
T  45244958 ggggaagcaatcagcgatgagcaacaagtgagggat 45244923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 1037837 - 1037573
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||| || ||||||||||| || || |||||||| | || ||| |||| ||  || ||||| |||||||||| |||| |||||||||||| |    
T  1037837 tgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcata 1037738  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||||||||||||||||   ||| | |||||| || |||||||  | ||  ||||||| ||||||||||| | ||| || || ||||||| || |      
T  1037737 tagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaatagtagg 1037638  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    |||| |||||||| ||||  |||||||||||||||||||| | |||||| |||||| ||| ||||    
T  1037637 ctaaattcaaatgtctaaccttacaacatctccttaaaacttcacaaataccttcttcagatatg 1037573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 44575604 - 44575529
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattca 140  Q
    ||||||||||||  | |||||||||||||||||||||  | ||| |||||||||||  |||| | |||||||||||    
T  44575604 agttgcaaaagcttaggacaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaaattca 44575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 239
Target Start/End: Complemental strand, 43277431 - 43277394
Alignment:
Q  202 aagttcaaatgcctaatgttacaacatctccttaaaac 239  Q
    |||||||||||| |||| ||||||||||||||||||||    
T  43277431 aagttcaaatgcgtaattttacaacatctccttaaaac 43277394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 4e-63; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 51113954 - 51113700
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||||| ||||||||||| ||||||||||| ||||| ||||||| ||| |||||||||||||||| ||||||||| |||||||||    
T  51113954 tgtgcatttttctaccacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcaca 51113855  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | |||||||||||||||||||||||| | |||||| |  |||||||  ||||| ||| |||||||||| |||||| |||  | |||| |||||||| ||     
T  51113854 tagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagtagcttcagttttgaacagtaag 51113755  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||| |||||||||||||| |||||||||||| ||||||| |||||||| |||||    
T  51113754 ctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttc 51113700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 13470905 - 13470652
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||| ||||||||||||||||||||||  |||||||||| || |||   ||  | |||||||||||||||||||| |||| |||||||||||| |    
T  13470905 tgtgcagttctctaccacatgtttcactccctcttctgtgacattatgacaaagttcaagtaatagttgcaaaagcccacaacaattctttgagatcata 13470806  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | |||||||| ||||| |||| |||| | |||||| ||||||||||  || || |||||  ||||||| |||||| |||  | || | ||  |||  |      
T  13470805 tagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttttttacaatagg 13470706  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    ||||||||||||||||||| ||||||||| |||||||||| |||||||| ||||    
T  13470705 ctaagttcaaatgcctaatcttacaacatatccttaaaacttgacaaatacctt 13470652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51764613 - 51764374
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||| |||||||||||||||||||| ||  |||||| || ||| | || || |||||||||||||||||| | |||| ||||||||||| ||    
T  51764613 tgtgcagttttcaaccacatgtttcactcccttctccttgacattatcacaatgttccagtaatagttgcaaaagcccgcaacaattctttgagatcgca 51764514  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | |||||||| |||||||||  ||||   |||||| |  |||||||  || || |||||| ||||||| |||||| |||  | || |||||||||         
T  51764513 tagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcactcttgaacattcgg 51764414  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaac 239  Q
     || ||||||||||||||| ||| ||||||||||||||||    
T  51764413 ataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 51121066 - 51120826
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||||||||||||||||||| || | ||||||||   ||||  |||  |   | | |||||||||||||||||||||||||||||| |||    
T  51121066 tgtgcagttttctaccacatgtttcactcctttttgtgtgacatacaaacagctttctagagacaattgcaaaagcccacgacaactctttgagattaca 51120967  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  ||| |||||||||||||  |||| |  ||||| ||||||||||  | |||  ||||||||||||| |||||| | | || || ||||||||| |       
T  51120966 tatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcactcttgaacaaccgg 51120867  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaaca 240  Q
      |||||||| || ||||||||||||||||||| |||||||    
T  51120866 tgaagttcaagtgtctaatgttacaacatctccataaaaca 51120826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 514901 - 514788
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||  |||||||| ||||||||| | ||||||| |   | ||| |||| || ||||||||||||||||||||  |||||||| |||||||||    
T  514901 tgtgcagtttttcaccacatgcttcactcccgtctctgtgataccttcacaattttgcagtaatagttgcaaaagcccacagcaactcttcgagatcaca 514802  T
Q  101 tggagtgtttcatc 114  Q
    || |||| ||||||    
T  514801 tgaagtgcttcatc 514788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 119; Significance: 9e-61; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 6402790 - 6403040
Alignment:
Q  5 cagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgga 104  Q
    |||||||||| |||||||||| ||||||| |||||||||| |||||| | | |||||||||||| ||||||||||| |||| ||||||||||||||| ||    
T  6402790 cagttttctatcacatgtttcgctcccttttctgtgacattataacaatctctcaataatagtttcaaaagcccactacaattctttgagatcacataga 6402889  T
Q  105 gtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaa 203  Q
    ||||||||||||||||| | || |||||||| |||||||| |  ||||  |||||| |||||||||||||| |||  | || ||||||||| | |  |||    
T  6402890 gtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcactcttgaacacccagttaa 6402989  T
Q  204 gttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  6402990 gttcaaatgcctaatgttacaacatctccttaaaacttgacaaataccttc 6403040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 6585402 - 6585156
Alignment:
Q  9 tttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgt 108  Q
    |||||||||||||||||| |||||| ||||||||||  | |||   ||||| |||||||| ||||||| ||  |||||||||||||||||||| ||||||    
T  6585402 tttctaccacatgtttcagtcccttctctgtgacattttcacaacctttcagtaatagttccaaaagcgcagaacaactctttgagatcacatagagtgt 6585303  T
Q  109 ttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaagttc 207  Q
    ||||||||||||| |||| |||||||| ||||| ||||  |  |  | ||||  ||||||||||||| |||  | || ||||||||| | |   ||||||    
T  6585302 ttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcactcttgaacacccagtaaagttc 6585203  T
Q  208 aaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    ||||||||||| ||| ||||||||||||||||||||||||| |||||    
T  6585202 aaatgcctaatattaaaacatctccttaaaacatgacaaataccttc 6585156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7119083 - 7119337
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||| |||||||||||||| | || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| |||||||||    
T  7119083 tgtgcagttttcttccacatgtttcacttctttttttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 7119182  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    ||||||||||||||||||||| | || |||||||| ||||||||||  || |   ||||  ||||||| |||||| |||  | || ||||||||||        
T  7119183 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcactcttgaacagtggg 7119282  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||| ||| |||||||||||||||| |||||||| |||||    
T  7119283 ctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc 7119337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 7131561 - 7131815
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||| |||||||||||||| | || | |||||||| |||||| | ||||| |||||||| ||||||||| | |||| |||| |||||||||    
T  7131561 tgtgcagttttcttccacatgtttcactgctttgtttgtgacataataacaatctttcagtaatagttccaaaagcccgcaacaattcttcgagatcaca 7131660  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    ||||||||||||||||||||| | || |||||||| ||||||||||  || |   ||||  ||||||| |||||| |||  | || ||||||||||        
T  7131661 tggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcactcttgaacagtggg 7131760  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||| ||| |||||||||||||||| |||||||| |||||    
T  7131761 ctaagttcaaatgtttaatcttagaacatctccttaaaacttgacaaataccttc 7131815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 120
Target Start/End: Complemental strand, 6603373 - 6603256
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatg 102  Q
    |||||||||||||||||||||||||||| || |||||||||| |||||| | |||||||||||||| |||||||||| ||||||||||||||||| |||     
T  6603373 tgcagttttctaccacatgtttcactcctttctctgtgacataataacaatatttcaataatagttccaaaagcccaggacaactctttgagatcgcata 6603274  T
Q  103 gagtgtttcatcatcaac 120  Q
    || |||||||||||||||    
T  6603273 gactgtttcatcatcaac 6603256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6432087 - 6432341
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||| ||||||||||||| | |||||||| || ||| || | ||  |||||||||| |||||||| |||| ||||| ||||||||    
T  6432087 tgtgcatttttctaccacaagtttcactcccttctgtgtgacattatcacaattgtacaggaatagttgcagaagcccacaacaattctttaagatcaca 6432186  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacc-taagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  |||||||||||||||||  |||| | |||||| ||||||||| | || || |||||||||||||| |||||| |||  | || | ||  |||  |      
T  6432187 taaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttttatacaatagg 6432286  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||  |||||||||||||||||||| |||||||| |||||    
T  6432287 ctaagttcaaatgtttaagtttacaacatctccttaaaacttgacaaataccttc 6432341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 6594779 - 6594525
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||||||||||||  ||||||  ||||||| ||||| ||| ||||  | |  |||||| |||||||||| |||| ||||||||||||||    
T  6594779 tgtgcagttttctaccacatgtttggctccctcctctgtgagatgatcacaattttctagttttagttgtaaaagcccacaacaattctttgagatcaca 6594680  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
     | ||||| ||||||||||||  ||| | |||||| | ||||||||  ||||| ||||||  ||||||||||||| |||  | || ||||||||| |       
T  6594679 cgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcactcttgaacacccgg 6594580  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
     ||||| ||||||  |||| ||| |||||||||||||||| |||||||| |||||    
T  6594579 ataagtacaaatgtgtaatcttataacatctccttaaaacttgacaaataccttc 6594525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 14820619 - 14820873
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||| ||||||||||||||| ||||| |||||||||| || ||||||||  | ||||| | |||||||||||| |||| |||| ||||||| |    
T  14820619 tgtgcagttttttaccacatgtttcacacccttctctgtgacatcattacatttttcaagtaataatcgcaaaagcccacaacaattcttggagatcata 14820718  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  |||||||||| ||||||| |||| | ||| || ||||||||||  |  || |||||| ||||||| |||||| ||| || || || ||||||  |      
T  14820719 taaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcactcctgaacaaaatt 14820818  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||  ||||||||| |||||||| | |||||||| |||||    
T  14820819 ctaagttcaaatgtttaagcttacaacatttccttaaaccttgacaaataccttc 14820873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6394790 - 6395044
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||||||||||| ||| ||||| ||||||||||  | ||| || |  | |  || |||||||||||||| |||| ||||||||||||||    
T  6394790 tgtgcagttttctaccacatgttccacacccttttctgtgacatttttacaattatcaagttgtaattgcaaaagcccacaacaattctttgagatcaca 6394889  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
       || ||||||||||||||  |||| | |||||| ||||||||||  || |  |||||| ||||||| |||||| ||| || || | |||||||| ||     
T  6394890 gaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttttgaacagaaag 6394989  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||  ||||||||| || ||||||| |||||||| |||||    
T  6394990 ctaagttcaaatgtttaagcttacaacatttctttaaaacttgacaaataccttc 6395044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 6409932 - 6410106
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||| | ||||||||||||||||||| | |||||||| || ||| || | ||| |||||||||||||||| || |||| ||||||||||||||    
T  6409932 tgtgcatttttttgccacatgtttcactcccttctgtgtgacattatcacagttgtacaaaaatagttgcaaaagccgacaacaattctttgagatcaca 6410031  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacc-taagttttggaacttcaaagtttattcca 174  Q
    |  || ||||||||||||||  |||| | |||| | ||||||||| | || || |||||||||||||| ||||||    
T  6410032 taaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattcca 6410106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6415892 - 6416146
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||| |||||||||||||||||||||   |||||||||| || |||   ||  | |||||||||||||||||| | |||| ||||||||||||||    
T  6415892 tgtgcagttctctaccacatgtttcactcccacttctgtgacattatcacaaaattcaagtaatagttgcaaaagcccgctacaattctttgagatcaca 6415991  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||| |||| ||||| |||| |||| | |||||| ||||||||||  || || |||||| ||||||  |||||| |||  | || | ||  |||  |      
T  6415992 tagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttttttacaaaagg 6416091  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    ||||||||||||||| ||| ||||||||| || ||||||| |||||||| |||||    
T  6416092 ctaagttcaaatgcccaatcttacaacatatctttaaaacttgacaaataccttc 6416146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 3 - 100
Target Start/End: Original strand, 19632367 - 19632464
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||||| |||||||||||||| ||||||| || |  ||| ||||||| ||| |||||||||||||||| |||| ||||||||||||||    
T  19632367 tgcagttttctaccacgtgtttcactcccttctctgtgatattagcacaatttttcagtaagagttgcaaaagcccacaacaattctttgagatcaca 19632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 11936384 - 11936205
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaa 163  Q
    |||||||||||||||| ||||||||||||||||  || ||||| || ||| |||||  ||||   |||||| | ||||||||  ||||| ||||||||||    
T  11936384 agttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 11936285  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
    |||| | |  |||||  | |||||||||||||| |  ||| |||||||| ||||||||||||||| || |||||||||||    
T  11936284 agttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatga 11936205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 11948364 - 11948185
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaa 163  Q
    |||||||||||||||| ||||||||||||||||  || ||||| || ||| |||||  ||||   |||||| | ||||||||  ||||| ||||||||||    
T  11948364 agttgcaaaagcccactacaactctttgagatccaatagagtgatttatcgtcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 11948265  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
    |||| | |  |||||  | |||||||||||||| |  ||| |||||||| ||||||||||||||| || |||||||||||    
T  11948264 agttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatga 11948185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 2 - 254
Target Start/End: Complemental strand, 7994354 - 7994101
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||||||||||||||||||||||||||  || || |||| || |||   ||  | ||||||||||||||| |||  |||| |||||||||||||||    
T  7994354 gtgcagttttctaccacatgtttcactccctcctcggtaacatcattacaaagttcaagtaatagttgcaaaagtccagaacaattctttgagatcacat 7994255  T
Q  102 ggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaac 200  Q
      |||||||| |||| |||| |||| | |||||  ||||||||||  || || |||||| ||||||| |||||  |||  | || ||||| |||     |    
T  7994254 atagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcactcttgtacaatcggc 7994155  T
Q  201 taagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    || |||||||||||| || ||||||||| |||||||||| | |||||| |||||    
T  7994154 tatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaataccttc 7994101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 14818308 - 14818453
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||| || ||| ||||  | ||||| | |||||||||||  |||| |||| ||||||| |    
T  14818308 tgtgcagttttctactacatgtttcacacccttctctgtgacattattacaattttcaagtaataatcgcaaaagcccagaacaattcttggagatcata 14818407  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    |  |||||||||| ||||||| |||| | ||| || ||||||||||    
T  14818408 taaagtgtttcattatcaacctttgtatttgataagttcaacacct 14818453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 6426437 - 6426691
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||||||| |||||||| |||||   |||||||   | ||| ||||  | ||||| |||||||| || || |||| ||||||||||| ||    
T  6426437 tgtgcagttttctaccacttgtttcacacccttcattgtgacacctttacaattttcaagtaataattgcaaaatccgacaacaattctttgagatcgca 6426536  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  |  |||||||||||||   |||| | |||||||||||||||||  || |  |||||| ||||||| |||||| ||| || ||   |||||||| ||     
T  6426537 taaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacgtttgaacagaaag 6426636  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||||||||||||  |||  ||||||||| |||||||||| | |||||| |||||    
T  6426637 ctaagttcaaatgtttaagcttacaacatttccttaaaacttcacaaataccttc 6426691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 10579910 - 10579764
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaat-aatagttgcaaaagcccacgacaactctttgagatcac 99  Q
    |||||||||||||||||||||||| |||||||| | ||||||    | ||| ||||||| | ||||||| |||||||| || |||| |||||||||||      
T  10579910 tgtgcagttttctaccacatgtttaactcccttctttgtgacccttttacagtttttcagtaaatagttccaaaagccgacaacaattctttgagatcga 10579811  T
Q  100 atggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    || |||||||| |||||||||  |||| | |||||| ||||||||||    
T  10579810 atagagtgttttatcatcaacttttgtatatgacaagttcaacacct 10579764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 14802331 - 14802405
Alignment:
Q  70 caaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacac 144  Q
    |||||| |||| |||| ||||||| ||||||| ||||||||||||||||||| |||| | |||||||||||||||    
T  14802331 caaaagaccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacac 14802405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 114
Target Start/End: Original strand, 9411292 - 9411394
Alignment:
Q  12 ctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttc 111  Q
    ||||||||||  |||||||||||||| |||||| || |||   || || ||| ||||||||||| ||||||||| ||||||||||| ||| |||| ||||    
T  9411292 ctaccacatgcatcactcccttatctctgacattatgacagcattgcagtaacagttgcaaaagtccacgacaattctttgagatctcatagagtatttc 9411391  T
Q  112 atc 114  Q
    |||    
T  9411392 atc 9411394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 178
Target Start/End: Original strand, 6423203 - 6423321
Alignment:
Q  61 taatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaact 159  Q
    |||||||||||||| ||||| |||||||||||||||| ||| |||||||| |||   |||  |||| | |||||| ||||||||||  || || ||||||    
T  6423203 taatagttgcaaaatcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaact 6423302  T
Q  160 tcaaagtttattccacgta 178  Q
    | |||||| ||| ||||||    
T  6423303 taaaagttcattgcacgta 6423321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6589496 - 6589243
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||||||||||||||||||||  || ||||||| || |||   ||  | | ||| ||||| ||||||   |||| | |||||||||| |    
T  6589496 tgtgcagttttctaccacatgtttcactccctcctccgtgacataattacaaagttgaagtgataattgcataagccctatacaattttttgagatcaga 6589397  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  ||||||| ||||| |||  |||| | |||||| ||||||||||  ||  | |||||| ||||||| |||||| |||  | || | |   |||| |      
T  6589396 tatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcactttcttacagaagg 6589297  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    ||||||||||||||||||| ||||||||||| || || || |||||||| ||||    
T  6589296 ctaagttcaaatgcctaatcttacaacatcttctcaatacttgacaaatacctt 6589243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 253
Target Start/End: Complemental strand, 8914003 - 8913904
Alignment:
Q  154 ggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    |||||| ||||||||||| || |||  | || |||||| || | ||| |||||||||||  |||| ||||||||||| |||||||| |||||||| ||||    
T  8914003 ggaactacaaagtttattgcaagtagcttcactcttgatcatccaacgaagttcaaatgtttaatcttacaacatcttcttaaaacttgacaaatacctt 8913904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 546839 - 547087
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| |||||| || || ||| | || ||||||||||| |||||||||||||||||||    
T  546839 tgtgcagttttctagcacatgtttcactcccttctctgtgacatgaaaacattcttccagtaacaattccaaaagcccacaacaactctttgagatcaca 546938  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||||||||||||  || |||||   |||||| |||| |||||  | ||| |||||||||||||| ||||||  ||  | || |  | ||||         
T  546939 tagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattccaaataggttcactactaaacaattgg 547038  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaat 248  Q
     ||||||||||||||| || |||||||||||||||||||||| ||||||    
T  547039 ataagttcaaatgccttatcttacaacatctccttaaaacatcacaaat 547087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 553405 - 553648
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |  ||| |    ||| || |||||||||||||||  |||||||||||| ||||||    
T  553405 tgtgcagttttctaccacatgattcactcctttatctgtgacatcactacaataaaacaacaacagttgcaaaagcccagaacaactctttgaaatcaca 553504  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    |  |||| ||||||||||||  ||||   |||||| ||||||||||  |||||  |||||| |||||| | |  |||||| | || |||||||||||       
T  553505 ttaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcggg 553604  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
     |||||||||||| ||||||||||||||| ||||||||||||||    
T  553605 ttaagttcaaatgtctaatgttacaacatgtccttaaaacatga 553648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 53761942 - 53761692
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||| ||||||||||||||||||| || ||||||| || ||| | ||||| ||||| ||||||||||||||||||| |||| |||||||||    
T  53761942 tgtgcagttttcttccacatgtttcactcccttgtccgtgacattatcacaatgtttcagtaata-ttgcaaaagcccacgacaattcttcgagatcaca 53761844  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
      |||||||| ||| | |||  | ||   |||||| |||||| |||  || || |||||| ||||||| ||||||  ||  | || |||||||||         
T  53761843 --gagtgttttatcgttaactttcgtaaatgacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcgg 53761746  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  53761745 ctaagttcaaatgcctaatgttacaacatctccttaaaacttgacaaatacctt 53761692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 1524656 - 1524420
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||| |||||  ||||||||| | |||||||||| | |||   |   |||||| ||||||||||||||||||||||||| |||||||| |    
T  1524656 tgtgcagttttctatcacataattcactcccctctctgtgacataacaac---tacgcaataacagttgcaaaagcccacgacaactctgtgagatcata 1524560  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||||||||||||||||  ||||   |||||||||||||||||  |  || |||||||||||||| |||||| | | ||| | | | ||||||        
T  1524559 tagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatgaagttctattttagaacagttgg 1524460  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaac 239  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  1524459 ctaagttcaaatgcctaagtttacaacatctccttaaaac 1524420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 55908901 - 55908637
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||| || ||||||||||| || || |||||||| | || ||| |||| ||  || ||||| |||||||||| |||| |||||||||||| |    
T  55908901 tgtgcagttttcgactacatgtttcacaccattctctgtgacttcatcacaattttccagaaacagttgtaaaagcccacaacaattctttgagatcata 55908802  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||||||||||||||||   ||| | |||||| || |||||||  | ||  ||||||| ||||||||||| | ||| || || |||||||||| |      
T  55908801 tagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtagg 55908702  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    |||| |||||||| ||||  |||||||||||||||| ||| | |||||| |||||| ||| ||||    
T  55908701 ctaaattcaaatgtctaaccttacaacatctccttagaacttcacaaataccttcttcagatatg 55908637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 3 - 146
Target Start/End: Original strand, 640843 - 640986
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatg 102  Q
    ||||||||||||||||||| ||||||||||| | ||| |||| || ||| | || || ||| || |||||||| ||||| ||| |||||||| |||| |     
T  640843 tgcagttttctaccacatgattcactcccttctttgttacataatgacaatcttccagtaacagatgcaaaagaccacggcaattctttgaggtcacgta 640942  T
Q  103 gagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    ||||||||||||||||||  |||| |||||||| ||||||||||    
T  640943 gagtgtttcatcatcaacgtttgtatctgacaagttcaacacct 640986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 55505278 - 55505136
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacat-gataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcac 99  Q
    |||||||||||||| ||| |||||||||||||| |||||||||| | ||    ||||||||||| |  |||||||| ||||||||| |||||||| ||||    
T  55505278 tgtgcagttttctaacacgtgtttcactcccttctctgtgacatcgcta----tttttcaataacaaatgcaaaagtccacgacaattctttgaggtcac 55505183  T
Q  100 atggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    ||  |||||| |||| |||||| |||| | |||||| ||||||||||    
T  55505182 ataaagtgttccatcgtcaacctttgtatatgacaagttcaacacct 55505136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 68 - 167
Target Start/End: Complemental strand, 1548530 - 1548430
Alignment:
Q  68 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagt 166  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||   |||| | |||||| ||||||||||  ||||| |||| ||||||||    
T  1548530 tgcaaaagcccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagt 1548431  T
Q  167 t 167  Q
    |    
T  1548430 t 1548430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 65 - 239
Target Start/End: Complemental strand, 3438674 - 3438500
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaa 163  Q
    |||||||||||||||| ||||||||||||||| ||||||||| ||| |||||||||  |||| | ||||||  |||| ||||  | ||||| ||| ||||    
T  3438674 agttgcaaaagcccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaa 3438576  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaac 239  Q
    |||| ||| |||  || | || || | |||| | | ||||||||||||| ||||| ||||||||||||||||||||    
T  3438575 agttcattgcacacaaattcactcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaac 3438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 558488 - 558542
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaa 119  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  558488 agttccaaaagcccacgacaactctttgagatcacatggagtgcttcatcatcaa 558542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 1513516 - 1513407
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaa 163  Q
    |||||||||||||||||||||| ||||||||| || | ||||||||||||||||||  ||||   |||||| |||||||| |  ||||| ||||||||||    
T  1513516 agttgcaaaagcccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaa 1513417  T
Q  164 agtttattcc 173  Q
    |||| |||||    
T  1513416 agttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 1537939 - 1537766
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    ||||| ||||||| |||||  ||||||||||| | ||||||| |||||||   || || ||| |||||||||||||||||||||| ||||||||| |||     
T  1537939 gtgcatttttctagcacatacttcactcccttctgtgtgacaagataacaaagttccagtaaaagttgcaaaagcccacgacaacactttgagattacac 1537840  T
Q  102 ggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattcca 174  Q
      |||||||  |||| |||  |||| | |||||| |||||||| |  ||||| |||||||||||||| ||||||    
T  1537839 acagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcca 1537766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 8184203 - 8184031
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtga-catgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcac 99  Q
    |||||| ||||||| |||||| |||||||||| |||||||| |||  | ||| |||| || ||| |||| ||||||||||| |||||||||||||||  |    
T  8184203 tgtgcaattttctagcacatgcttcactccctcatctgtgatcatt-tcacaattttccagtaacagttccaaaagcccacaacaactctttgagattgc 8184105  T
Q  100 atggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattc 172  Q
    || ||||| |  |||||||||  |||| | |||||| ||||||||||  ||||| |||||||||||||| ||||    
T  8184104 atagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 12121630 - 12121458
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||||| ||||||||| | |||||||||  | | ||   || || | | ||||||||||||||||| |||| ||||||||| ||     
T  12121630 tgtgcatttttctaccacatgcttcactcccatctctgtgacaaaaaagcaccattccagtgagagttgcaaaagcccacggcaacactttgagattacg 12121531  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattc 172  Q
      ||||||||||||||||||  |||| | |||||| |||||||| |  ||||| |||||||||||||| ||||    
T  12121530 gagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 65 - 238
Target Start/End: Original strand, 659701 - 659873
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaa 163  Q
    ||||| |||| ||||  |||| || ||||||||||||  |||||||||| || |||  |||| | |||||| ||||||||||  ||||| ||||||||||    
T  659701 agttgtaaaaccccaaaacaattccttgagatcacat--agtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaa 659798  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaa 238  Q
    | |||||| | ||||  | |  ||||||||||||  ||||||| ||||  |||||||||||||||||||||||||    
T  659799 aatttattactcgtagcttccctcttgaacagcaggctaagtttaaatatctaatgttacaacatctccttaaaa 659873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 5 - 146
Target Start/End: Complemental strand, 1517665 - 1517524
Alignment:
Q  5 cagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgga 104  Q
    ||||| |||||||||||  | |||||||| |||||||||| || ||| |||| || |||||||| |||||  ||||||||| |||||||||| |||  ||    
T  1517665 cagttctctaccacatgcctaactcccttctctgtgacatcatgacaattttccagtaatagtttcaaaattccacgacaattctttgagattacaaaga 1517566  T
Q  105 gtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    |||  ||||| | |||  |||||  |||||||||||||||||    
T  1517565 gtgcgtcatcgttaactcttgtcattgacaaattcaacacct 1517524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 8 - 144
Target Start/End: Complemental strand, 1552936 - 1552797
Alignment:
Q  8 ttttctaccacatgtttcactcccttatctgtgacatgataa---cattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgga 104  Q
    |||||| | ||||| ||||||||||| || ||||||| ||||   |||| ||  | ||| || |||||||||||||||||| ||||||| ||||||| ||    
T  1552936 ttttctccgacatgcttcactcccttctcggtgacataataattacattgttctagtaacagctgcaaaagcccacgacaattctttgatatcacattga 1552837  T
Q  105 gtgtttcatcatcaaccattgtctctgacaaattcaacac 144  Q
    |||||||||||| ||   |||| | |||||||||||||||    
T  1552836 gtgtttcatcattaatatttgtatgtgacaaattcaacac 1552797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 370846 - 370958
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||  |||||||| ||||||||| | | ||||| |   | ||| |||| || ||||||||||||||||| || |||||||||||||||||||    
T  370846 tgtgcagtttttcaccacatgcttcactcccatctttgtgataccttcacaattttgcagtaatagttgcaaaagccgacaacaactctttgagatcaca 370945  T
Q  101 tggagtgtttcat 113  Q
    || |||| |||||    
T  370946 tgaagtgcttcat 370958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 243
Target Start/End: Original strand, 566182 - 566358
Alignment:
Q  68 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagt 166  Q
    |||||||||||||||||   |||||||||||||| ||||||||||||||||||  |||    ||| |||| ||||   | ||||||| ||||||||||||    
T  566182 tgcaaaagcccacgacagtactttgagatcacatagagtgtttcatcatcaacgcttgaacatgataaatccaacgtttcaagttttagaacttcaaagt 566281  T
Q  167 ttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
    | ||||||||||  | ||   ||  |||||    ||||||||||||  |||||||||||||| ||||||||||||||    
T  566282 tcattccacgtagcttcacatttctacagctgcttaagttcaaatgtgtaatgttacaacatatccttaaaacatga 566358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 570341 - 570507
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaa 163  Q
    |||||||||||||| |||||||||||||| |||| || ||||  ||| | ||||||   ||| | |||||| ||||||||||  |||||  |||||||||    
T  570341 agttgcaaaagcccgcgacaactctttgaaatcagatagagttcttcgttatcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaa 570440  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatct 230  Q
    |||| | |||||| | || || | |||| |||  | ||||||||||||||||||  |||||||||||    
T  570441 agttcaatccacgcagtttcacttttgagcagtgagctaagttcaaatgcctaagtttacaacatct 570507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 7226054 - 7225957
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||||| || |||| |||||| || ||||| | | ||||  ||| || ||||||||||||||| |||| |||||||||||| ||||||    
T  7226054 tgcagttttctaccacgtgcttcaatcccttctcggtgacctcaaaacaactttccagtaatagttgcaaaagtccacaacaactctttgatatcaca 7225957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 1508112 - 1508057
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaac 120  Q
    |||||||||||||||||||||| ||||||||| |||   |||||||||||||||||    
T  1508112 agttgcaaaagcccacgacaacactttgagattacacacagtgtttcatcatcaac 1508057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 8187263 - 8187000
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||||| ||||||||   ||||||||||  ||||||| | |  ||| |||| || ||| |  ||||||||||||| |||||||||||| ||  |||    
T  8187263 gtgcagttttttaccacatccatcactcccttccctgtgacgttacgacaattttccagtaacaactgcaaaagcccacaacaactctttgaaattgcat 8187164  T
Q  102 ggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaac 200  Q
      ||||||| |||||||||  |||| | |||||| ||||||||||  ||||| | || ||||||||| |||||    |   | | ||||| |||| |  |    
T  8187163 aaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattccggagagcccaactcttggacagtaggc 8187064  T
Q  201 taagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    ||||||||||| |||||| | |||||||||| | ||||| |||||||| |||||| ||| ||||    
T  8187063 taagttcaaatccctaatctcacaacatctcttcaaaacttgacaaataccttcttcagatatg 8187000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 173
Target Start/End: Complemental strand, 1489527 - 1489361
Alignment:
Q  8 ttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtg 107  Q
    ||||||| |||||| ||||||||||| |||||||||| | ||||   || || ||| ||||||||||||||||| |||| | ||||||| |||   ||||    
T  1489527 ttttctagcacatgcttcactcccttctctgtgacattaaaacacccttccagtaagagttgcaaaagcccacggcaacacattgagattacacacagtg 1489428  T
Q  108 tttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattcc 173  Q
    |||| |  | |||  |||| | |||||| |||||||| |  ||||| |||||||||||||| |||||    
T  1489427 tttcgttgttaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1489361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 1496088 - 1495926
Alignment:
Q  5 cagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgga 104  Q
    ||||| |||||||||||  | |||||||| ||||||| || || ||| |||| || |||| |||||||||  ||||||||| |||||||||| |||  ||    
T  1496088 cagttctctaccacatgcctaactcccttctctgtgatatcatgacaattttccagtaattgttgcaaaattccacgacaattctttgagattacaaaga 1495989  T
Q  105 gtgtttcatcatcaaccattgtctctgacaaattcaacacc-taagttttggaacttcaaagt 166  Q
    |||  ||||| | |||  |||||  |||||||| ||||||| | || || |||||||||||||    
T  1495988 gtgcgtcatcgttaacttttgtcattgacaaatccaacaccttgaggttaggaacttcaaagt 1495926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 264
Target Start/End: Original strand, 1600447 - 1600609
Alignment:
Q  103 gagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaact 201  Q
    ||||| |||||| |||||| |||| | |||||| ||||||||||  |||||  ||||||||||||| ||||| || |  | || | |||||||     ||    
T  1600447 gagtgcttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggct 1600546  T
Q  202 aagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    ||||||||||| ||||| ||| || ||||||||||||| |||||||| |||||| ||| ||||    
T  1600547 aagttcaaatgtctaattttagaaaatctccttaaaacttgacaaataccttcttcagatatg 1600609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 644939 - 644999
Alignment:
Q  183 cagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
    |||||||||||||| |  ||| |||||||| ||||||||||||||| || |||||||||||    
T  644939 cagtcttgaacagcgagttaaattcaaatgtctaatgttacaacatatcattaaaacatga 644999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 172
Target Start/End: Complemental strand, 1519227 - 1519143
Alignment:
Q  89 tttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattc 172  Q
    ||||||||||||| ||||| ||  ||||||||| |||| | |||||| ||||||||||  ||||| |||||||||||||| ||||    
T  1519227 tttgagatcacatagagtgcttattcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 264
Target Start/End: Complemental strand, 1533963 - 1533899
Alignment:
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    |||||||||||||  | || ||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  1533963 ctaagttcaaatgtgtcatcttacaacatctccttaaaacatgactaataccttcttcagatatg 1533899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 558630 - 558677
Alignment:
Q  206 tcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    ||||||| ||||||||| ||||| ||||||||||||||||||| ||||    
T  558630 tcaaatgtctaatgttagaacatgtccttaaaacatgacaaatacctt 558677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 641041 - 641095
Alignment:
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    ||||||||||||| ||||  ||||||||| |||||||||| ||| ||||||||||    
T  641041 ctaagttcaaatgtctaacattacaacatatccttaaaacttgaaaaattccttc 641095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 247
Target Start/End: Complemental strand, 7225855 - 7225809
Alignment:
Q  201 taagttcaaatgcctaatgttacaacatctccttaaaacatgacaaa 247  Q
    |||||||||||| ||||| ||||||||||||| |||||| |||||||    
T  7225855 taagttcaaatgtctaatcttacaacatctccgtaaaacttgacaaa 7225809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 1495875 - 1495831
Alignment:
Q  220 ttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    ||||||||||||||||||||||||| ||| |||||| ||| ||||    
T  1495875 ttacaacatctccttaaaacatgaccaataccttcttcagatatg 1495831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 1528173 - 1528121
Alignment:
Q  203 agttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttct 255  Q
    |||||||||||||||| |||| || | |||||||||| |||| ||||||||||    
T  1528173 agttcaaatgcctaatcttactacttttccttaaaacttgaccaattccttct 1528121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 7307853 - 7307905
Alignment:
Q  68 tgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaac 120  Q
    |||||||||| || ||||||||||||||||| | | |||| ||||||||||||    
T  7307853 tgcaaaagcctacaacaactctttgagatcatacgtagtgcttcatcatcaac 7307905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 18315446 - 18315182
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||||||||  ||  |||| || |||||||||| | ||||   || |||||| ||||||||||||| ||||||||||||||||||||||    
T  18315446 tgtgcagttttctaccacatacttttctcctttctctgtgacatcacaacagcgttccaataacagttgcaaaagcctacgacaactctttgagatcaca 18315347  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||| ||||||||||||  |||| | |||||| ||||||||||  ||||| ||||||| |||||| ||||||||||  | || |||||||   | |     
T  18315346 tagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattccacgtagcttcattcttgaatcacgag 18315247  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    |||||||||| || ||||| | | |||| || | |||||| |||||||| |||||| ||| ||||    
T  18315246 ctaagttcaactgtctaatctcagaacaacttcgtaaaacttgacaaataccttcttcaggtatg 18315182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 27922435 - 27922601
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||||||||||||||| ||||||||||| | ||||| || || ||| ||||  | | | | || ||||||||||| ||||||||||||||||| ||    
T  27922435 gtgcagttttctaccacatggttcactcccttctttgtgaaatcattacaattttcaagtgacaatttcaaaagcccacaacaactctttgagatcatat 27922534  T
Q  102 ggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtt 167  Q
      |||| ||||||||||||  |||| | |||||| ||||||||||  | ||| ||||||||||||||    
T  27922535 aaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagtt 27922601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 32151284 - 32151345
Alignment:
Q  58 caataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaa 119  Q
    |||||| |||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  32151284 caataacagttgcaaaagcccactacaactctttgagatcacatagagtgtttcatcatcaa 32151345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 34936336 - 34936171
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| ||||| |||||| | |  |||||||| || ||||||| | |||| ||||  | |||||||||||||||||||||||||||||||| |||  ||    
T  34936336 tgtgcaattttcaaccacacgctcaactcccttctccgtgacatcacaacaattttgaagtaatagttgcaaaagcccacgacaactctttgcgatggca 34936237  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaag 165  Q
    | |||||||| |||||||||  |||| | |||||| | ||||||||  ||||||||||| ||||||    
T  34936236 tagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaag 34936171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 110
Target Start/End: Original strand, 44736468 - 44736570
Alignment:
Q  8 ttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtg 107  Q
    |||||||| |||||||||||||||||   |||||||| |||||| |   ||||||  |||| ||||||||||| |||||||||||||||||||  |||||    
T  44736468 ttttctacaacatgtttcactcccttcgttgtgacattataacaatagctcaataccagttacaaaagcccacaacaactctttgagatcacaatgagtg 44736567  T
Q  108 ttt 110  Q
    |||    
T  44736568 ttt 44736570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 253
Target Start/End: Complemental strand, 17636508 - 17636317
Alignment:
Q  67 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaaag 165  Q
    ||||||||| | | |||||||||||||||||||||  | || |||||| |||||   ||| | |||||| ||||||||||  | ||| ||||||||||||    
T  17636508 ttgcaaaagtctaagacaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaag 17636409  T
Q  166 tttattccac----gtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    || |||| |     ||| || || ||||||||| |   ||||||||||||||||||| ||| |||||| ||||||||| |||||||| ||||    
T  17636408 ttcattcgatcgatgtagtttcactcttgaacatcggcctaagttcaaatgcctaatattagaacatccccttaaaacttgacaaatacctt 17636317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 243
Target Start/End: Complemental strand, 28246402 - 28246225
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaa 163  Q
    |||||||||||||| | ||||||||||||||||  || ||||| || ||  |||||  ||||   |||||| | ||||||||  ||||| ||||||||||    
T  28246402 agttgcaaaagcccgctacaactctttgagatccaatagagtgatttat--tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaa 28246305  T
Q  164 agtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatga 243  Q
    |||| | |  | |||  | |||||||||||| | |  ||| |||||||| ||||||||||||||| || |||||||||||    
T  28246304 agttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtctaatgttacaacatatcattaaaacatga 28246225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 34936134 - 34936083
Alignment:
Q  202 aagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattcctt 253  Q
    |||| |||||| ||||||| |||||||||||||||||||||| |||| ||||    
T  34936134 aagtacaaatgtctaatgtcacaacatctccttaaaacatgataaatacctt 34936083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 146
Target Start/End: Complemental strand, 17628127 - 17628042
Alignment:
Q  61 taatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    |||||||| ||| ||||||  |||| |||||||||||||| |||||| || |||||||||  | || | |||||| ||||||||||    
T  17628127 taatagtttcaagagcccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacct 17628042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 15092324 - 15092179
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||||||||||| ||||||||||||||||   |||||||||| ||||||   ||  | |||||||||||||||||||| |||| ||||||||||| ||    
T  15092324 tgtgcagttttctagcacatgtttcactcccacttctgtgacattataacaaaattcaagtaatagttgcaaaagcccacaacaattctttgagatcgca 15092225  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    | |||||||| ||||| |||| |||| |||||||||||||||||||    
T  15092224 tagagtgttttatcattaacctttgtttctgacaaattcaacacct 15092179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 3 - 254
Target Start/End: Original strand, 10614521 - 10614773
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatg 102  Q
    |||||||||||||||||||||||||||| |  |||||||||| || | |   ||  | |||||||||||||||||||| |||  |||| ||||||||||     
T  10614521 tgcagttttctaccacatgtttcactccttcttctgtgacattatgagaaagttcaagtaatagttgcaaaagcccactacagttcttcgagatcacata 10614620  T
Q  103 gagtgtttcatcatcaaccattgtctctgacaaattcaacaccta-agttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaact 201  Q
    |||||||| ||||| |||| | || | |||||| ||||||||||  || || |||||  ||| ||| |||||| |||  | || | ||  |||  |  ||    
T  10614621 gagtgttttatcattaaccttcgtatttgacaagttcaacacctccagattgggaacaacaacgttcattccaagtagcttcacttttttacaataggct 10614720  T
Q  202 aagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    ||||||||||||||||| ||||||||| |||||||||| |||||||| |||||    
T  10614721 aagttcaaatgcctaatcttacaacatatccttaaaacttgacaaataccttc 10614773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 10170251 - 10170145
Alignment:
Q  4 gcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgg 103  Q
    ||||||||||  ||||||||||||||| || |||||||||| || ||| || ||||  ||||||| |||||| |||| ||||  |||||||||||||| |    
T  10170251 gcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgagatcacatag 10170152  T
Q  104 agtgttt 110  Q
    |||||||    
T  10170151 agtgttt 10170145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 110
Target Start/End: Complemental strand, 10177776 - 10177670
Alignment:
Q  4 gcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgg 103  Q
    ||||||||||  ||||||||||||||| || |||||||||| || ||| || ||||  ||||||| |||||| |||| ||||  |||||||||||||| |    
T  10177776 gcagttttctttcacatgtttcactcctttctctgtgacatcattacaattgttcacaaatagtttcaaaagtccacaacaatactttgagatcacatag 10177677  T
Q  104 agtgttt 110  Q
    |||||||    
T  10177676 agtgttt 10177670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 255
Target Start/End: Original strand, 7977691 - 7977759
Alignment:
Q  187 cttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttct 255  Q
    |||||||| ||  ||| ||| ||||| |||||||||||||||||||||||||| |||| ||| ||||||    
T  7977691 cttgaacaacaggctaggtttaaatgtctaatgttacaacatctccttaaaacttgaccaataccttct 7977759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 7554415 - 7554533
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||||||||||||||| ||||||||||| |||||||||| || ||||  ||||| ||| ||||| ||||| |||| ||||||||||||||||| ||    
T  7554415 gtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaactctttgagatcatat 7554514  T
Q  102 ggagtgtttcatcatcaac 120  Q
     ||||| ||||||||||||    
T  7554515 agagtgcttcatcatcaac 7554533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 19468657 - 19468418
Alignment:
Q  16 cacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatca 115  Q
    ||||||||||||||| || |||||||||| || |||    | ||  |||| || |||||| |||| |||  |||||||||||||||  ||||||||||||    
T  19468657 cacatgtttcactcctttctctgtgacatcattacaaccgtccacaaataattccaaaagtccacaacagttctttgagatcacataaagtgtttcatca 19468558  T
Q  116 tcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaagttcaaatgcc 214  Q
    |||||| |||| |||||||| ||||||||||  || || |||||| ||||||| | |||| |||  | || ||||||||||    ||||||| |||||||    
T  19468557 tcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcactcttgaacagtgggctaagtttaaatgcc 19468458  T
Q  215 taatgttacaacatctccttaaaacatgacaaattccttc 254  Q
    |||| ||| |||| ||||||||||| |||||||| |||||    
T  19468457 taatattagaacacctccttaaaacttgacaaatgccttc 19468418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 9586565 - 9586710
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||| | |||| ||| ||   ||||||||||||||| ||||||  ||| || |||||||| ||||||||| || ||||| |||||    
T  9586565 tgtgcaattttctaccacacgcttcaatccattgcttgtgacatgataacaatttttctgtaaaagatgcaaaagtccacgacaattcattgaggtcaca 9586664  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    |  ||||||||||||| |||   ||| | |||||| ||||||||||    
T  9586665 taaagtgtttcatcattaacatctgtatatgacaagttcaacacct 9586710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 52082582 - 52082652
Alignment:
Q  76 cccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
    ||||| ||||||||||||||||||||  | ||||||||||||||   |||||| |||||| ||||||||||    
T  52082582 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacct 52082652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 9580995 - 9581110
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    |||||| |||||||||||| | |||||||| || | |||||||  |||||  | ||||| ||| ||   |||||| ||||||||| ||||||||||||||    
T  9580995 tgtgcaattttctaccacacgcttcactccattgtttgtgacaccataactatctttcagtaaaaggcacaaaagtccacgacaattctttgagatcaca 9581094  T
Q  101 tggagtgtttcatcat 116  Q
    |  || ||||||||||    
T  9581095 taaagcgtttcatcat 9581110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 797 - 533
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||| ||||||||||| || || ||| |||| | || ||| |||| || ||| ||||| || ||||||| |||| |||| ||||||| |    
T  797 tgtgcagttttctactacatgtttcacaccattctctatgacttcatcacaattttccagtaacagttgtaatagcccacaacaattcttcgagatcata 698  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaa 199  Q
    | ||||||||||||||| ||  |||| | |||||| || |||||||  | ||  ||||||| ||||||||||| | ||| || || |||||||||| |      
T  697 tagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcactcttgaacagtagg 598  T
Q  200 ctaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaattccttctccagttatg 264  Q
    |||| |||||||| |||   |||||||||||||||| ||| | |||||| |||||| ||| ||||    
T  597 ctaaattcaaatgtctagccttacaacatctccttagaacttcacaaataccttcttcagatatg 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 2 - 126
Target Start/End: Original strand, 39111 - 39235
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||| | |||||||||||||||||||||   ||||||| || ||||||||| || ||  || ||||||||||||| ||||||||||||||||||||    
T  39111 gtgcagttgtttaccacatgtttcactcccttcattgtgacacgagaacatttttccagtatcaggtgcaaaagcccactacaactctttgagatcacat 39210  T
Q  102 ggagtgtttcatcatcaaccattgt 126  Q
      ||||||||||||| |||| ||||    
T  39211 aaagtgtttcatcattaacctttgt 39235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 2 - 238
Target Start/End: Original strand, 32267402 - 32267636
Alignment:
Q  2 gtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacat 101  Q
    |||||||||||||| ||||| ||||||||||| | ||||| || || ||| ||||| | | | | || ||||||||||| ||||||||||||||||| ||    
T  32267402 gtgcagttttctactacatgcttcactcccttctttgtgatatcattacaatttttaagtgacaatttcaaaagcccacaacaactctttgagatcatat 32267501  T
Q  102 ggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaac 200  Q
      |||| |||||||||||| ||||| | |||||| ||||| ||||  | ||| |||||||||||||| ||| |   || || || | |||||||          
T  32267502 aaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatttc---tagtttcactgttgaacactggga 32267598  T
Q  201 taagttcaaatgcctaatgttacaacatctccttaaaa 238  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  32267599 taagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 41889717 - 41889488
Alignment:
Q  11 tctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatggagtgttt 110  Q
    ||||||||||| ||||||||||| | |||||||| |||||| ||||| | ||| | || | ||||||| | ||||||||||||||||  ||  |||||||    
T  41889717 tctaccacatgattcactcccttctttgtgacatcataacaatttttaagtaacaatttcgaaagcccgcaacaactctttgagatcttataaagtgttt 41889618  T
Q  111 catcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgtaattccagtcttgaacagcaaactaagttcaa 209  Q
    ||||||||||  |||| | ||| || ||||||||||  | ||| ||||||| |||||| ||| || |||  | || | ||||||| |    |||||||||    
T  41889617 catcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcactattgaacatccggataagttcaa 41889518  T
Q  210 atgcctaatgttacaacatctccttaaaac 239  Q
    ||  ||||||||||||||| ||||||||||    
T  41889517 atatctaatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 41901704 - 41901537
Alignment:
Q  5 cagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcacatgga 104  Q
    ||||||||||||||||| ||||||||||| | |||||||| || ||| | ||  | | | | || |||||| |||| ||||||||||||||||| ||  |    
T  41901704 cagttttctaccacatgcttcactcccttctttgtgacatcattacaatcttgaagtgacaatttcaaaagtccacaacaactctttgagatcatataaa 41901605  T
Q  105 gtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttatt 171  Q
    ||| ||||||||||||  |||| | |||||| ||||||||||  ||||| ||||||||||||| ||||    
T  41901604 gtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagtctatt 41901537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 20478255 - 20478110
Alignment:
Q  1 tgtgcagttttctaccacatgtttcactcccttatctgtgacatgataacattttttcaataatagttgcaaaagcccacgacaactctttgagatcaca 100  Q
    ||||||||||||||| ||||||||| |||| ||   |||||||| ||  || ||||||| || || |||||||||||||| |||| || |||||||||||    
T  20478255 tgtgcagttttctacgacatgtttcgctcctttcattgtgacattatcgcaatttttcagtagtatttgcaaaagcccacaacaattccttgagatcaca 20478156  T
Q  101 tggagtgtttcatcatcaaccattgtctctgacaaattcaacacct 146  Q
       | |||||| ||||||||  |||| | |||||| ||||||||||    
T  20478155 gataatgtttcgtcatcaacatttgtatatgacaagttcaacacct 20478110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 37937877 - 37937931
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaa 119  Q
    ||||||||||||||||||||  |||||||||| |||| |||||||| ||||||||    
T  37937877 agttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaa 37937931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 38267665 - 38267562
Alignment:
Q  65 agttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaa 163  Q
    |||| |||||||||||| ||  |||||||||| |||| |||||| |||||||||||  |||| | || ||| | |||||||| ||| || ||||||||||    
T  38267665 agtttcaaaagcccacggcacgtctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaa 38267566  T
Q  164 agtt 167  Q
    ||||    
T  38267565 agtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 17205527 - 17205568
Alignment:
Q  3 tgcagttttctaccacatgtttcactcccttatctgtgacat 44  Q
    |||||||||||||||||||||||| ||| || ||||||||||    
T  17205527 tgcagttttctaccacatgtttcaatcctttttctgtgacat 17205568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 88831 - 88878
Alignment:
Q  67 ttgcaaaagcccacgacaactctttgagatcacatggagtgtttcatc 114  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  88831 ttgcaaaagcccatgacacctctttgagatcacatggagtgcttcatc 88878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 88943 - 88980
Alignment:
Q  201 taagttcaaatgcctaatgttacaacatctccttaaaa 238  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  88943 taagttcaaatgtctaatcttacaacatctccttaaaa 88980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0807 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 248
Target Start/End: Complemental strand, 1559 - 1389
Alignment:
Q  82 acaactctttgagatcacatggagtgtttcatc---atcaaccattgtctctgacaaattcaacacct-aagttttggaacttcaaagtttattccacgt 177  Q
    |||| ||||||||||||||| ||||||||||||   ||||||  |||| | |||||| | ||||||||  || || |||||| ||||||| ||| ||  |    
T  1559 acaattctttgagatcacatagagtgtttcatcatcatcaacatttgtatttgacaagtccaacacctctagcttaggaactacaaagttcatttcaaat 1460  T
Q  178 aattccagtcttgaacagcaaactaagttcaaatgcctaatgttacaacatctccttaaaacatgacaaat 248  Q
    |  ||||    |||||| ||  ||||||||||||| ||||| ||| |||||||||||||||| ||||||||    
T  1459 aggtccacagatgaacaccaggctaagttcaaatgtctaatcttataacatctccttaaaacttgacaaat 1389  T

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