View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_54 (Length: 352)
Name: NF8910_low_54
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_54 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 38042257 - 38042599
Alignment:
| Q |
10 |
ggacatcagagtaacaataagatcagaaaaagcatcgagaataaacttgtgagtgttgttgggattaatagcgagatagctaagaagaagctcgtgtaag |
109 |
Q |
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| T |
38042257 |
ggacatgagagtaacaataagatcagaaaaagcatcgagaataaacttgtgagtgttgttgggattaatagcgagatagctaagaagaagctcgtgtaag |
38042356 |
T |
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| Q |
110 |
gtttcccaattggacttcacgtccttcatcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatg |
209 |
Q |
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| T |
38042357 |
gtttcccaattggacttcacgtccttcatcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatg |
38042456 |
T |
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| Q |
210 |
ttggcaccgccacacttccgttgaaaactgtcttctttttgttagaatcatttgccggtgctggcacagtggaaaccaacaatgatgaggaagaggagaa |
309 |
Q |
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| T |
38042457 |
ttggcaccgccacacttccgttgaaaactgtcttctttttgttagaatcatttgccggtgctggcacagtggaaaccaacaatgatgaggaagaggagaa |
38042556 |
T |
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| Q |
310 |
tgaggatggggttgattcaactatggagttggaacggccggga |
352 |
Q |
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| T |
38042557 |
tgaggatggggttgattcaactatggagttggaacggccggga |
38042599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 31980863 - 31980765
Alignment:
| Q |
136 |
catcaactctggttgcgcttccaccatctcttgcattgaccttcgaaaatccatgtaagggtccggtgaatatgttggcaccgccacacttccgttgaa |
234 |
Q |
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| T |
31980863 |
catcaactccggtcgcgcctccaccatctcttgcatcgatcttctaaaatccatataaggatcgggcgagtaggttggtactgccacacttccattgaa |
31980765 |
T |
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