View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_57 (Length: 335)
Name: NF8910_low_57
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 24356358 - 24356062
Alignment:
| Q |
14 |
cagagatagctaagtatcggtttaactatttatttacaagaactaacatcaaagttagccatatttgcaagactaaatgaataattaaaccttaaatata |
113 |
Q |
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| T |
24356358 |
cagagatagctaagtatcggtttaactatttatttacaagaactaacatcaaagttagccatatttgcaagactaaatgaataattaaaccttaaatata |
24356259 |
T |
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| Q |
114 |
tatatgtctaaggagattttagacgtatcaccttgataagagagtgctcatggatggaagagctactccttcagctagtccgaagaaagcgcgaattgcc |
213 |
Q |
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||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356258 |
tat--gtctaaggagattttagaggtatcaccttgataagagagtgctcatggatggaagagctactccttcagctagtccgaagaaagcgcgaattgcc |
24356161 |
T |
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| Q |
214 |
aacaaggctattgttgagtggttggctgctaaaggtgtaaggagagttgctaaagaccacaacaatacaccccaagccatcaccctttttcctccatat |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24356160 |
aacaaggctattgttgagtggttggctgctaaaggtgtaaggagagttgctaaagaccacaacaatacaccccaagccatcaccctttttcctccatat |
24356062 |
T |
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