View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_59 (Length: 334)
Name: NF8910_low_59
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_59 |
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| [»] scaffold0103 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 92 - 327
Target Start/End: Original strand, 16699906 - 16700141
Alignment:
| Q |
92 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactacttaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
191 |
Q |
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| T |
16699906 |
ggagtatttgttttacgttcttttaccttagtgttgatagcatcagcactactcaaaattaatgatgcaaaagagtgtgatgaattttacgttgttagag |
16700005 |
T |
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| Q |
192 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
291 |
Q |
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| T |
16700006 |
aaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtgatcctcaagatatctaacataaata |
16700105 |
T |
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| Q |
292 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
327 |
Q |
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| T |
16700106 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
16700141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 16699759 - 16699797
Alignment:
| Q |
17 |
attaattgtagtcaagaaattatttaatttatttcatct |
55 |
Q |
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| T |
16699759 |
attaattgtagtcaagaaattttttaatttatttcatct |
16699797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 292 - 327
Target Start/End: Original strand, 22846323 - 22846358
Alignment:
| Q |
292 |
aagcttgctttgcttgtgttgttgttttgatgatgt |
327 |
Q |
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| T |
22846323 |
aagcttgctttgcatgtgttgttgttttgatgatgt |
22846358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 268
Target Start/End: Original strand, 17322578 - 17322679
Alignment:
| Q |
167 |
tgtgatgaattttacgttgttagagaaggtgataccttttatagcatagcagagaagtgcaatgatccatttatcttgttatcgaatccacatgtccgtg |
266 |
Q |
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| T |
17322578 |
tgtgatgaattttagatggttaaagaaggggaaacctattatagtatagcggagaagtgtgatgatcaatctatcttgttctccaatccaaatgtccatg |
17322677 |
T |
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| Q |
267 |
at |
268 |
Q |
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|| |
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| T |
17322678 |
at |
17322679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 293 - 327
Target Start/End: Complemental strand, 36005 - 35971
Alignment:
| Q |
293 |
agcttgctttgcttgtgttgttgttttgatgatgt |
327 |
Q |
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| T |
36005 |
agcttgctttgcctgtgttgttgttttgatgatgt |
35971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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