View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8910_low_6 (Length: 670)
Name: NF8910_low_6
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_6 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Original strand, 1701685 - 1702342
Alignment:
| Q |
1 |
agagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagc |
100 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
1701685 |
agagttcttgcacaaatgatgtctacttgtggcaattttaggaatttagaaaataaaaaatttcattgtaattcttgccatattaataaaagtcataagc |
1701784 |
T |
|
| Q |
101 |
ttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaa |
200 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
1701785 |
ttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgtttggggaccctctcctatcacttcagttcatggttacaa |
1701884 |
T |
|
| Q |
201 |
atattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaaaactgatgttgttactatatttccaaattttcattca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1701885 |
atattatcttgtgtttgttgatcattttactcgatattcttggatttatccgttaaaaagtaaaactgatgttgttactatatttccaaattttcattca |
1701984 |
T |
|
| Q |
301 |
aaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1701985 |
aaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatacataaaactcaagccatatcttaactctcatggtatat |
1702084 |
T |
|
| Q |
401 |
ctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactc |
500 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1702085 |
ctcactatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactc |
1702184 |
T |
|
| Q |
501 |
tcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgacaacaacacatcttaaaaacaaatgtcctaatgaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
1702185 |
tcatgttccacaaaaattctggtgttatgccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaa |
1702284 |
T |
|
| Q |
601 |
attctgtttggttccactcctaattatcttaatcttggagtctttggatatctctgct |
658 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||| |
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|
| T |
1702285 |
attctgtttggttccactcctaattatcttaatcttcgagtctttggatgtctgtgct |
1702342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 9e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 181258 - 181434
Alignment:
| Q |
1 |
agagttcttgcactaatgatgtctagttgtggcagttttaggaacttagaaaatnnnnnnnttcattgtaattcttgtcatattaataaaagtcataagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181258 |
agagttcttgcactaatgatgtctagttgtggcaattttaggaacttagaaaataaaaaatttcattgtaattcttgtcatattaataaaagtcataagc |
181357 |
T |
|
| Q |
101 |
ttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgtttggggaccttctcct |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
181358 |
ttcctttttcagtttcttctatcaaaaccgcagctcctcttgaactgttattttctgatgtttggggaccttctcct |
181434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 64 - 542
Target Start/End: Original strand, 5400484 - 5400962
Alignment:
| Q |
64 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
163 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
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|
| T |
5400484 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
5400583 |
T |
|
| Q |
164 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaa |
263 |
Q |
| |
|
||||||| || ||||| || || |||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| || |
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|
| T |
5400584 |
ggggaccatcccctataacgtccattaatggttacaggtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaa |
5400683 |
T |
|
| Q |
264 |
aactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatac |
363 |
Q |
| |
|
||||||||| | || |||||||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| |
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|
| T |
5400684 |
aactgatgtagctatcatatttcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatac |
5400783 |
T |
|
| Q |
364 |
ataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtc |
463 |
Q |
| |
|
| ||||||||||||||| | || | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || | |
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|
| T |
5400784 |
tttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgcc |
5400883 |
T |
|
| Q |
464 |
atatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
542 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
5400884 |
atatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
5400962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 64 - 542
Target Start/End: Original strand, 3541459 - 3541937
Alignment:
| Q |
64 |
cattgtaattcttgtcatattaataaaagtcataagcttcctttttcagtttcttctatcaaaaccgtagctcctcttgaactgttattttctgatgttt |
163 |
Q |
| |
|
||||||||||| || |||||||||||||||||| ||||||||||| | ||||| || |||| | |||| ||||||| | || |||||||||| |
|
|
| T |
3541459 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
3541558 |
T |
|
| Q |
164 |
ggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgttaaaaagtaa |
263 |
Q |
| |
|
||||||| || ||||| || || | ||||||||||| ||||||||||| |||||||| ||||| |||| || | |||||||||| | |||| || |
|
|
| T |
3541559 |
ggggaccatcccctataacgtccatcaatggttacaagtattatcttgtctttgttgaccatttcactcgctacacgtggatttatccacttaaaaacaa |
3541658 |
T |
|
| Q |
264 |
aactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtggcactgaatac |
363 |
Q |
| |
|
||||||||| | || |||||||| | |||||||| ||| |||||| | || || ||||||| ||||| | ||||| |||||||| ||||||||| |
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|
| T |
3541659 |
aactgatgtagctatcatatttcctcaatttcattctaaaattgaaaactttttctcccacaaagtcaaatctatttacactgatggtggaactgaatac |
3541758 |
T |
|
| Q |
364 |
ataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgcaaacatcgtc |
463 |
Q |
| |
|
| ||||||||||||||| | || | ||||| ||||| || | || |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || | |
|
|
| T |
3541759 |
tttaaactcaagccatatttcaatacacatggaatatcccattacattagcccaccttatactcctgaacacattggcattgctgaacgcaaacaccgcc |
3541858 |
T |
|
| Q |
464 |
atatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatgccttccaaatggc |
542 |
Q |
| |
|
||||||||||||| | ||||| || | ||||||||| ||| || |||| ||||||||||||||| || |||||||| |
|
|
| T |
3541859 |
atatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatgcttttcaaatggc |
3541937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 265
Target Start/End: Original strand, 31098805 - 31098935
Alignment:
| Q |
135 |
tcctcttgaactgttattttctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaa |
234 |
Q |
| |
|
|||||||||||| | ||||||||||||||| |||| ||||| || | | | | ||| |||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
31098805 |
tcctcttgaactcattttttctgatgtttggagaccctctccaattaacactatcagtggatacaaatattatcttgtgttcgttgatcattttactaga |
31098904 |
T |
|
| Q |
235 |
tattcttggatttatctgttaaaaagtaaaa |
265 |
Q |
| |
|
||| |||||||||| |||||||||||| |
|
|
| T |
31098905 |
tataaatggatttatcccctaaaaagtaaaa |
31098935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 154 - 476
Target Start/End: Complemental strand, 26592600 - 26592278
Alignment:
| Q |
154 |
tctgatgtttggggaccttctcctatcacttcagttaatggttacaaatattatcttgtgtttgttgatcattttactcaatattcttggatttatctgt |
253 |
Q |
| |
|
||||||||||||||||| || ||||| || || |||||||||| | ||| ||||||||||||||||| || |||||| |||| | |||||||||| |
|
|
| T |
26592600 |
tctgatgtttggggaccatcccctataacatccattaatggttatagatactatcttgtgtttgttgaccactttactagatatacatggatttatcctc |
26592501 |
T |
|
| Q |
254 |
taaaaagtaaaactgatgttgttactatatttccaaattttcattcaaaagttgaaactatgttttcatacaaagttaaatccctctacaccgatggtgg |
353 |
Q |
| |
|
| | ||| |||||| |||| || | || || ||| | |||||| | ||| |||||| | | || || |||| || ||||| | ||||| |||||||| |
|
|
| T |
26592500 |
ttagaagcaaaactaatgtagtagccatcttcccacaatttcatactaaaattgaaaatcttttctccaacaaggtaaaatcaatttacacagatggtgg |
26592401 |
T |
|
| Q |
354 |
cactgaatacataaaactcaagccatatcttaactctcatggtatatctcacgatatcagcccaccgtacactcccgaacatattggtattgcagaacgc |
453 |
Q |
| |
|
|||||||| || ||||||| | ||| | || | ||||| ||||| || | || || ||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
26592400 |
aactgaatatatctaactcaaatcttatttcaatacacatggaatatcacattacataagtccaccttacactcctgaacatattggcattgcagaacgc |
26592301 |
T |
|
| Q |
454 |
aaacatcgtcatatagtagaaac |
476 |
Q |
| |
|
|||||| | |||||||| ||||| |
|
|
| T |
26592300 |
aaacattgccatatagtcgaaac |
26592278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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