View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_68 (Length: 304)
Name: NF8910_low_68
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_68 |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (8 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 304
Target Start/End: Complemental strand, 45245535 - 45245242
Alignment:
| Q |
11 |
agcagagaaaagtgtgttacatcaagaagtattctaaaagaagtaaattcgaaaacaaaaaacatctcacatttcaaagttcaaacttaagtagagcagt |
110 |
Q |
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| T |
45245535 |
agcagagaaaagtgtgttacaacaagaagtattctaaaagaagtaaattcgaaaacaaaaaacatcttacacttcaaagttcaaacttaagtagagcagt |
45245436 |
T |
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| Q |
111 |
ttcagaatgctagcaaacaaggcatccttggcgcgacaagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgat |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45245435 |
ttcagaatgctagcaaacaaggcatccttgacgcgacaagagttcccgctcttgttgactgatatgataaagaactggaacatttatctttttcaacgat |
45245336 |
T |
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| Q |
211 |
ggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctacca |
304 |
Q |
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| T |
45245335 |
ggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcaattttctacca |
45245242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 304
Target Start/End: Complemental strand, 51121305 - 51121050
Alignment:
| Q |
53 |
gtaaattcgaaaacaaaaaacatctcacatttc-aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatcc---ttggcgcgaca |
148 |
Q |
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| T |
51121305 |
gtaaatttgaaaacaaaaaacatcttacatttcaaaagttcaaacttccacagagcagcctcagaatgctagcaaacaagacaaccatgatgacgcgaaa |
51121206 |
T |
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| Q |
149 |
agagttcccgctcttgttgactgatatgataa-agaactggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcat |
247 |
Q |
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||||||||| |||| | ||| ||||||| |||| |||||| ||||||| ||||||||| ||||||||| || || ||| ||| || || ||||| |
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| T |
51121205 |
agagttccctctctctatctttgaaatgataagagaa-aggaacaaatatctttctcaacgatgaccttgaaaagactattgaggcaacaaaatcagcat |
51121107 |
T |
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| Q |
248 |
gcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctacca |
304 |
Q |
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| |||| | |||| | |||||| |||||| || | | |||||||||||||||||||| |
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| T |
51121106 |
ggactttatagcaatacctcaagttgatcactctcaattgtgtgcagttttctacca |
51121050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 304
Target Start/End: Complemental strand, 51114039 - 51113938
Alignment:
| Q |
203 |
tcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctac |
302 |
Q |
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|||| |||||||||||||||| ||| ||| ||| || |||||||||||||| ||| || | | ||||| |||||| | |||| |||||| |||||||| |
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| T |
51114039 |
tcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttctac |
51113940 |
T |
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| Q |
303 |
ca |
304 |
Q |
| |
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|| |
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| T |
51113939 |
ca |
51113938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 304
Target Start/End: Original strand, 570175 - 570293
Alignment:
| Q |
186 |
tggaacatttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagt |
285 |
Q |
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||||||| |||||||| |||| ||||| ||||| |||| ||||||| ||| || ||| |||||||| | |||||| | ||||||||||||| | ||| |
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| T |
570175 |
tggaacagttatctttctcaatgatggtcttgataatatcatcgagtcaacaatatttttatgcactttatagcagttcttcaaattgatctccctcagt |
570274 |
T |
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| Q |
286 |
tgtgtgcagttttctacca |
304 |
Q |
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||||||||||||||||||| |
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| T |
570275 |
tgtgtgcagttttctacca |
570293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 8187358 - 8187248
Alignment:
| Q |
194 |
ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca |
293 |
Q |
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|||||||| ||| ||||||||||||||||| ||||||| ||| ||||| || |||||| | | ||||| |||||| ||||| ||||| ||||| ||||| |
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| T |
8187358 |
ttatctttctcagcgatggccttgaaaatatcatcgagtcaacaacatcaggatgcacattatagcagcgcctcagattgacttctgtcagttgcgtgca |
8187259 |
T |
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| Q |
294 |
gttttctacca |
304 |
Q |
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||||| ||||| |
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| T |
8187258 |
gttttttacca |
8187248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 186 - 231
Target Start/End: Original strand, 659532 - 659577
Alignment:
| Q |
186 |
tggaacatttatctttttcaacgatggccttgaaaataccatcgag |
231 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
659532 |
tggaacaattatctttttcaacgatggccttgaaaataccatcgag |
659577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 157
Target Start/End: Complemental strand, 1553122 - 1553051
Alignment:
| Q |
86 |
aaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc |
157 |
Q |
| |
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||||||||||||| || |||| ||||| |||| |||||||||||| |||||||| |||| |||||||||| |
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| T |
1553122 |
aaagttcaaacttcagaagagtagttttggaatactagcaaacaagacatccttgatgcgagaagagttccc |
1553051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 55505372 - 55505313
Alignment:
| Q |
194 |
ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt |
253 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||| ||| ||| |||| ||| |||||||| |
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|
| T |
55505372 |
ttatctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactt |
55505313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 640748 - 640806
Alignment:
| Q |
195 |
tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt |
253 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||| ||| |||||||||| ||||| |
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|
| T |
640748 |
tatctttctcaatgatggccttgaaaataccattgagtcaacgacattagcattcactt |
640806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 1600364 - 1600422
Alignment:
| Q |
195 |
tatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcactt |
253 |
Q |
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||||||| |||| ||||||||| ||| |||||||||||||| ||| ||||||| ||||| |
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| T |
1600364 |
tatctttctcaaggatggccttaaaagtaccatcgagacaacaaccttagcattcactt |
1600422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 304
Target Start/End: Original strand, 553384 - 553421
Alignment:
| Q |
267 |
caaattgatctctgtaagttgtgtgcagttttctacca |
304 |
Q |
| |
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||||| ||||||| |||||||||||||||||||||||| |
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| T |
553384 |
caaatcgatctctctaagttgtgtgcagttttctacca |
553421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 157
Target Start/End: Complemental strand, 18315572 - 18315518
Alignment:
| Q |
103 |
agagcagtttcagaatgctagcaaacaaggcatccttggcgcgacaagagttccc |
157 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||| ||| ||||| |||||||||| |
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| T |
18315572 |
agagtagtttgagaatgctagcaaacaaggcatctttgacgcgagaagagttccc |
18315518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 34936430 - 34936320
Alignment:
| Q |
194 |
ttatctttttcaacgatggccttgaaaataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgca |
293 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||| || ||||||||||| ||||| | ||||| ||||||||||||||| | | ||||||||| |
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|
| T |
34936430 |
ttatctttctcaacaatggccttgaagttatcatcgaggtaacaacattagcatccactttatggcagttcctcaaattgatctccctcaattgtgtgca |
34936331 |
T |
|
| Q |
294 |
gttttctacca |
304 |
Q |
| |
|
||||| |||| |
|
|
| T |
34936330 |
attttcaacca |
34936320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 27922208 - 27922280
Alignment:
| Q |
68 |
aaaaacatctcacatttcaaagttcaaacttaagtagagcagtttcagaatgctagcaaacaaggcatccttg |
140 |
Q |
| |
|
|||||||||| |||||||| || |||||||| || ||| | || | ||||||||||||||||||||||||| |
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|
| T |
27922208 |
aaaaacatcttacatttcagagctcaaacttcagcagaagacttcaacaatgctagcaaacaaggcatccttg |
27922280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 304
Target Start/End: Original strand, 12102164 - 12102248
Alignment:
| Q |
220 |
aataccatcgagacaataacattagcatgcacttgaaagcagtgcctcaaattgatctctgtaagttgtgtgcagttttctacca |
304 |
Q |
| |
|
|||| ||||||| ||| ||||||| | |||||| | |||||| | ||| |||| ||||| | |||||||||||||||||||||| |
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|
| T |
12102164 |
aatatcatcgagtcaacaacattatgaagcactttatagcagttcttcagattgctctctctcagttgtgtgcagttttctacca |
12102248 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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