View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_70 (Length: 287)
Name: NF8910_low_70
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_70 |
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| [»] scaffold0790 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 139; Significance: 9e-73; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 24428481 - 24428326
Alignment:
| Q |
1 |
tggtgataatagcgctggtctgtggaggaactttgaattcttcagctgcaaatttgagaacggcggtaaaaggtgcagcttcaggaacactgaaactgaa |
100 |
Q |
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| T |
24428481 |
tggtgataatagcgctggtctgtgggggaactttgaattcttcagctgcaaatttgagaacggcggtaaaaggtgcagcttcaggaacactgaaactgaa |
24428382 |
T |
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| Q |
101 |
atcgtgaaagaagaataaaacggaaaattagaatatttatttatgatcgatgaataaaaa |
160 |
Q |
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| T |
24428381 |
atcgtgaaagaagaataaaacggaaaattagaatat----ttatgatcgatgaataaaaa |
24428326 |
T |
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Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 187 - 276
Target Start/End: Complemental strand, 24428305 - 24428216
Alignment:
| Q |
187 |
aacatacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaa |
276 |
Q |
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| T |
24428305 |
aacatacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaa |
24428216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0790 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0790
Description:
Target: scaffold0790; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 276
Target Start/End: Complemental strand, 350 - 265
Alignment:
| Q |
188 |
acatacactttgaagggtagttttggatcggaagtgagagtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaa |
276 |
Q |
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| T |
350 |
acatacactttgaagggtagttttgaatcggaagtgagagtgagtttgaaataaacctttc---caccgttccacatattcaccaccaa |
265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Original strand, 33985988 - 33986035
Alignment:
| Q |
226 |
agtgactttgaaagaaacctttccaccaccgttcgccatattcaccaccaa |
276 |
Q |
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| T |
33985988 |
agtgactttgaaagaaaccttt---ccaccgttccacatattcaccaccaa |
33986035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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