View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_76 (Length: 277)
Name: NF8910_low_76
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_76 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 113 - 277
Target Start/End: Original strand, 33790832 - 33790996
Alignment:
| Q |
113 |
atttttaggaagctgcatatttatcttactctacacatatacttaccaaaatataaaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
212 |
Q |
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| T |
33790832 |
atttttaggcagctgcatatttatcttactctacacatatacttaccaaaatatacaatattttgtcatgaccaatttggttgatttaatttcaggggtg |
33790931 |
T |
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| Q |
213 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaacc |
277 |
Q |
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| T |
33790932 |
tgacgcatccatattaatagactcaaagaagggcaatgaatcagagaaagcagcaagagcaaacc |
33790996 |
T |
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Target: chr7; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 33793330 - 33793231
Alignment:
| Q |
17 |
attaaagaatattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtagaccatgtactatcataattt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
33793330 |
attaaagaatattcattcttttggttttatagaggaattagtttgaatgacattccatgagagaagaagacgtgaagtaggccatgtactaacataattt |
33793231 |
T |
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