View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8910_low_79 (Length: 261)
Name: NF8910_low_79
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 44260297 - 44260541
Alignment:
| Q |
1 |
agtgcgcagagatatcatcagtaacatctatccaacttggcatccacattttagtaacttggatgggaatcaactcagagacttcattgctactataaat |
100 |
Q |
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| T |
44260297 |
agtgcgcagagatatcatcagtaacatctatccaacttggcatccacattttagtaacttggatgggaatcaactcagagacttcattgctactataaat |
44260396 |
T |
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| Q |
101 |
gctaagattcaagcttgcaatcacaaaatcagcatgttgaaaaatatgcaacaaattgaaactaacaccttggatatatgtgagatgattgatttttctg |
200 |
Q |
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| T |
44260397 |
gctaagattcaagcttgcaatcacaaaatcagcatgttgaaaaatatgcaacaaattgaaactaacaccttggatatatgtgagatgattgatttttctg |
44260496 |
T |
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| Q |
201 |
atcttggtgattttcctcctagttcaccattaaaccaacttaatg |
245 |
Q |
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| T |
44260497 |
atcttggtgattttcctcctagttcaccattaaaccaacttaatg |
44260541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 15978014 - 15978092
Alignment:
| Q |
68 |
aatcaactcagagacttcattgctactataaatgctaagattcaagcttgcaatcacaaaatcagcatgttgaaaaata |
146 |
Q |
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| T |
15978014 |
aatcaactcagagacttcattgctactgtaaatgataagatccaagcttgtgatcacaaaatcagcatgttgaaaaata |
15978092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 52000073 - 52000145
Alignment:
| Q |
71 |
caactcagagacttcattgctactataaatgctaagattcaagcttgcaatcacaaaatcagcatgttgaaaa |
143 |
Q |
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| T |
52000073 |
caactcagagacttaagtgctgttatagatgccaagattcaagcttgtaatcacaaaattaacatgtttaaaa |
52000145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 150
Target Start/End: Complemental strand, 21819110 - 21818989
Alignment:
| Q |
29 |
tatccaacttggcatccacattttagtaacttggatgggaatcaactcagagacttcattgctactataaatgctaagattcaagcttgcaatcacaaaa |
128 |
Q |
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|||||||||||| ||||| ||| | |||| ||||||| | ||||||| || ||||| ||||| | ||||||| |||||| ||||||| |||| | || |
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| T |
21819110 |
tatccaacttgggatccatgtttcattaacatggatggtgaacaactcaaagccttcactgctattgtaaatgccaagattgaagcttgtgatcaaagaa |
21819011 |
T |
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| Q |
129 |
tcagcatgttgaaaaatatgca |
150 |
Q |
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| T |
21819010 |
ttagcatgctgaaaactatgca |
21818989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 21868395 - 21868451
Alignment:
| Q |
99 |
atgctaagattcaagcttgcaatcacaaaatcagcatgttgaaaaatatgcaacaaa |
155 |
Q |
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|||| |||||||||||||| ||||||||||| |||||| | || || |||||||||| |
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| T |
21868395 |
atgccaagattcaagcttgtaatcacaaaattagcatgctaaagaaaatgcaacaaa |
21868451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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