View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8910_low_90 (Length: 233)
Name: NF8910_low_90
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8910_low_90 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 34 - 216
Target Start/End: Complemental strand, 38484728 - 38484542
Alignment:
| Q |
34 |
cctgtggggtatgattatgaatgatgagtgaaaaagtaaagtgaattccaaatggaagcacttatgcacacgtaaaagaagggaatccatcatgatcatc |
133 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484728 |
cctgtggggtatgattatgaatgatgagtgaaaaagtatagtgaattccaaatggaagcacttatgcacacgtaaaagaagggaatccatcatgatcatc |
38484629 |
T |
|
| Q |
134 |
atcatcatgagtatgaccattaagcaatgatactacattacataa----tatacccaccaaaaatcatatcctctcccccttcattt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38484628 |
atcatcatgagtatgaccattaagcaatgatactacattacataatacttatacccaccaaaaatcatatcctctcccccttcattt |
38484542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University