View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8910_low_96 (Length: 214)

Name: NF8910_low_96
Description: NF8910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8910_low_96
NF8910_low_96
[»] chr5 (1 HSPs)
chr5 (1-175)||(5254457-5254629)
[»] chr7 (4 HSPs)
chr7 (11-175)||(4469695-4469858)
chr7 (11-175)||(38691017-38691179)
chr7 (11-175)||(39669443-39669585)
chr7 (16-96)||(4468497-4468577)
[»] chr8 (3 HSPs)
chr8 (11-175)||(6647846-6648010)
chr8 (31-96)||(41989977-41990042)
chr8 (31-97)||(18476600-18476666)
[»] chr1 (2 HSPs)
chr1 (11-175)||(20133853-20134016)
chr1 (11-175)||(24523790-24523932)
[»] chr2 (1 HSPs)
chr2 (11-175)||(13859575-13859739)
[»] chr6 (1 HSPs)
chr6 (16-175)||(11144177-11144338)
[»] chr3 (1 HSPs)
chr3 (11-175)||(7551350-7551514)
[»] scaffold0136 (1 HSPs)
scaffold0136 (11-175)||(40809-40951)
[»] chr4 (1 HSPs)
chr4 (139-175)||(3993395-3993431)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5254457 - 5254629
Alignment:
Q  1 aaagatctaatatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaatt 100  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  5254457 aaagatctaatatagag--agttgagagattattagtttggcataaagtggcacatatgtagacagagttagttaccaaagacaaacgttagatgaggtt 5254554  T
Q  101 ttttattttctttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5254555 ttttcttttctttggtggcacaaatttaatgagaaatttttttagcaaaagtttctttagaaaaacatagttaac 5254629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 2e-69; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 4469858 - 4469695
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||    
T  4469858 tatatagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaggttttttcttttc 4469759  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||    
T  4469758 tttggtggcacaaatttaatgag-aatttttttagcaaaagtttgtttagaaaaacatagttaac 4469695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 38691179 - 38691017
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||| ||||| |||||||||||||||||||||||  | ||||| |||||    
T  38691179 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagttaattaccaaagacaaacgttagatg--agttttttttttc 38691082  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    |||| |||||||||||||||||||| | |||| | ||||||||| ||||||||||||||||||||    
T  38691081 tttgttggcacaaatttaatgagaatttttttcaacaaaagtttgtttagaaaaacatagttaac 38691017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 39669443 - 39669585
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| ||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||                      |||||    
T  39669443 tatatagagatttgaaagatgattagtttgacataaagtggcacatatgtagacagagttagttaccaaagac----------------------ttttc 39669520  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  39669521 tttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttagaaaaacatagttaac 39669585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 96
Target Start/End: Complemental strand, 4468577 - 4468497
Alignment:
Q  16 agagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatga 96  Q
    ||||| |||||||| ||||| ||||||||||||||||||| ||||||||| |  ||||||| ||| ||||||  |||||||    
T  4468577 agagatttgagagaggattactttggcataaagtggcacaaatgtagacagaagtagttacaaaaaacaaacaatagatga 4468497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 6647846 - 6648010
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| |||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||| |||||    
T  6647846 tatatagagagttgaaagatgattagtttggcataaagtggcacatatgtagacagagttagttaccaaagacaaacgttagatgatgttttttcttttc 6647945  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  6647946 tttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttagaaaaacatagttaac 6648010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 41989977 - 41990042
Alignment:
Q  31 gattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatga 96  Q
    |||||||||||||||||||| ||||||| |||| | ||||||||| |||| ||||||  |||||||    
T  41989977 gattagtttggcataaagtgccacatatctagaaaaagttagttaacaaaaacaaacaatagatga 41990042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 97
Target Start/End: Complemental strand, 18476666 - 18476600
Alignment:
Q  31 gattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaa 97  Q
    |||||||||||||||||||| ||||||| |||  | ||||||||| |||| ||||||  ||||||||    
T  18476666 gattagtttggcataaagtgccacatatctaggaaaagttagttaacaaaaacaaacaatagatgaa 18476600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 20134016 - 20133853
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  |||||| |||||    
T  20134016 tatatagagagttgagaaatgattagtttggcataaagtggcacagatgtagacagagttagttaccaaagacaaacgttagatgaggtttttt-ttttc 20133918  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  20133917 tttggtggcacaaatttaatgagaaatttttttagcaaaagtttgtttagaaaaacatagttaac 20133853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 24523932 - 24523790
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| |||||||| |||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||                      |||||    
T  24523932 tatatagagagttaagagatgattagtttgacataaaatggcacatatgtagacagagttagttaccaaagac----------------------ttttc 24523855  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    |||||||||||||||||||||||||   |||||||||||||||| ||||||||||||||||||||    
T  24523854 tttggtggcacaaatttaatgagaatcttttttagcaaaagtttgtttagaaaaacatagttaac 24523790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 13859575 - 13859739
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||| ||||  |||||| |||||    
T  13859575 tatatagagagttgagagatgattagtttggcataaagtggcacatatatagacagagttagttatcaaagacaaacgttatatgaggttttttcttttc 13859674  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||    
T  13859675 tttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttacaaaaacatagttaac 13859739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 16 - 175
Target Start/End: Complemental strand, 11144338 - 11144177
Alignment:
Q  16 agagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttctttgg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||| |    
T  11144338 agagagttgagagatgattagtttggcataaagtggcacatatgtagacagagttagttaccaaagacaaacgttagatgagattttttcttttctttag 11144239  T
Q  116 tggcacaaatttaatgagaa--atctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||| | ||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||    
T  11144238 tggtataaatttaatgagaatttttttttttgcaaaagtttgtttagaaaaacatagttaac 11144177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 7551350 - 7551514
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| ||||||||||||||||||| ||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| ||||||  |||||    
T  7551350 tatatagagagttgagagatgatttgtttgacataaagtgacacagatgtagacagagttagttaccaaagacaaacgttagatgatattttt--ttttc 7551447  T
Q  111 tttggtggcacaaatttaatgagaa--atctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    |||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||    
T  7551448 tttgttggcacaaatttaatgagaattttttttttggcaaaagtttgtttagaaaaacatagttaac 7551514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 40951 - 40809
Alignment:
Q  11 tatagagagagttgagagatgattagtttggcataaagtggcacatatgtagacatagttagttaccaaagacaaacgttagatgaaattttttattttc 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||                      |||||    
T  40951 tatatagagagttgagagatgattagtttgacataaagtggcacatatgtagacaaagttagttaccaaagac----------------------ttttc 40874  T
Q  111 tttggtggcacaaatttaatgagaaatctttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    ||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||    
T  40873 tttggtggcacaaatttaatgagaattttttttagcaaaagtttgtttagaaaaacatagttaac 40809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 3993431 - 3993395
Alignment:
Q  139 tttttagcaaaagtttctttagaaaaacatagttaac 175  Q
    |||||||||||||||| ||||||||||||||||||||    
T  3993431 tttttagcaaaagtttgtttagaaaaacatagttaac 3993395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University