View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_high_11 (Length: 556)
Name: NF8911_high_11
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 11 - 543
Target Start/End: Original strand, 39998886 - 39999418
Alignment:
| Q |
11 |
gtttggtggtaaaatgtaaaatgacatgtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaag |
110 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39998886 |
gtttggtggtaaaatgtaaaatgacaggtcttggatccggaggtttcagatttgagtcagttatacctttgaagattggaagtgctctttaagggcaaag |
39998985 |
T |
|
| Q |
111 |
gtctttcctaccttatactggtgcatcttcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgta |
210 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39998986 |
gtctttcctaccttatactggtgcatcgtcccctcatcctaaatttatttcaggcacattgaattagctggttgaagaataaattaattttatgtttgta |
39999085 |
T |
|
| Q |
211 |
aagggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtagggcatgcatgctattgaggtctagcgcaaataattggtacaca |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39999086 |
aagggcaggactggagtgcccctcaccctagacttttttattatgaaaaaatagtaggacatgcatgctattgaggtctagcgcaaataattggtacaca |
39999185 |
T |
|
| Q |
311 |
tggtgtatgagtgttgtaaaactcggatagcaaatttgattcttactgataaaaaagtttaggacataatttgaaactaacctttcccataaaatttaaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39999186 |
tggtgtatgagtgttgtaaaactcggatagcaaatttgattcttactgataaaaaagtttaggacataatttgaaactaatctttcccataaaatttaaa |
39999285 |
T |
|
| Q |
411 |
tgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacgaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39999286 |
tgaagtaatgccattgctatttgactatatggaaatatgatactataaaaggatgggatgtccttctagttcagcattcattctcccctttgaatacgaa |
39999385 |
T |
|
| Q |
511 |
cagattttcactagtgccttgcatggttctttt |
543 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
|
|
| T |
39999386 |
cagattttcactagtgccttgcatggtactttt |
39999418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University