View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_high_20 (Length: 445)
Name: NF8911_high_20
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 424
Target Start/End: Original strand, 960110 - 960528
Alignment:
| Q |
5 |
ttttattttgtaaaattgattaattctatgattggattcactttctatgagaggtaaacatgattttagaattctaaacatgattttgtcatatgtgtga |
104 |
Q |
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| T |
960110 |
ttttattttgtaaaattgattaattatatgattggattcactttctatgagaggtaaacatgattttagaattctaaacatgattttgtcatatgtgtga |
960209 |
T |
|
| Q |
105 |
gtattcactttctataaatcatacacgtaagatgagttctcctatctcaatcaatttttactatgtacgaagtttttaccattggttaacaatgattatt |
204 |
Q |
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| T |
960210 |
gtattcactttccataaatcatacatgtaagatgagttctcccatctcaatcgatttttactatgtacgaagtttttaccgttggttaacaatgattatt |
960309 |
T |
|
| Q |
205 |
aatctctatcagaggatatgtcacacacataagataagttctctcatctcaaccgattttttcatatgcaagagctggaaattgaactctaaccacttat |
304 |
Q |
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|||||||||| |||||||||| | |||||||||||||||||||||||||||| | |||||||||||||||||||||| | ||||||| |||||||||| | |
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| T |
960310 |
aatctctatccgaggatatgtgagacacataagataagttctctcatctcaatccattttttcatatgcaagagctgaagattgaaccctaaccacttgt |
960409 |
T |
|
| Q |
305 |
ttaaggagctctaatctcttaccatttaaatcaatttattgttggattaaaagtataattgtaaccctttatgtgaagctgagttttggagctactctaa |
404 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||||||||||| |||||| |
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| T |
960410 |
ttaaggagctctaatctcttaccatttaaaccaatttattgttggattaaaagtataa-tgtaaccatttatatgaagttgagttttggagcttctctaa |
960508 |
T |
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| Q |
405 |
agagaaagcagtattatact |
424 |
Q |
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| T |
960509 |
agagaaagcagtattatact |
960528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 5632921 - 5632889
Alignment:
| Q |
317 |
aatctcttaccatttaaatcaatttattgttgg |
349 |
Q |
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| T |
5632921 |
aatctcttaccatttaaatcaatttattgttgg |
5632889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 347
Target Start/End: Complemental strand, 9798076 - 9798034
Alignment:
| Q |
305 |
ttaaggagctctaatctcttaccatttaaatcaatttattgtt |
347 |
Q |
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||||||||||| |||||||||||| |||||| ||||||||||| |
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| T |
9798076 |
ttaaggagctcaaatctcttaccacttaaattaatttattgtt |
9798034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 349
Target Start/End: Complemental strand, 6743256 - 6743224
Alignment:
| Q |
317 |
aatctcttaccatttaaatcaatttattgttgg |
349 |
Q |
| |
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||||||||||||||| ||||||||||||||||| |
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|
| T |
6743256 |
aatctcttaccatttgaatcaatttattgttgg |
6743224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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