View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_high_24 (Length: 383)
Name: NF8911_high_24
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_24 |
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Alignment Details
Target: chr2 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 368
Target Start/End: Original strand, 1058930 - 1059289
Alignment:
| Q |
9 |
ttggtgttatacaaagattgagatggtttttgaataatattcccatacaatatttagataatctaccaattattgatgaagagtaaacttcagggtggaa |
108 |
Q |
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| T |
1058930 |
ttggtgttatacaaagattgagatggtttttgaataatattcccatacaatatttagataatctaccaattattgatgaagagtaaacttcagggtggaa |
1059029 |
T |
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| Q |
109 |
aatgcttttttaggttattcatttttatgatgtacttttcagtttcaaagtgaatttttggtatattcctttatagtatttaaaacattgaaactgtgtg |
208 |
Q |
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| T |
1059030 |
aatgcttttttaggttattcatttttatgatgtacttttcagtttcaaagtgaatttttggtatattcctttatagtatttaaaacattgaaactgtgtg |
1059129 |
T |
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| Q |
209 |
attctattcaacagctaattggaggtattaaagataaattgatggttaagaaaataattctaactttctcaggatatctgagaagtgattagtgtatttt |
308 |
Q |
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| T |
1059130 |
attctgttcaacagctaattggaggtattaaagataaattgatggttaagaaaataattctaactttctcaggatatctgagaagtgattagtgtatttt |
1059229 |
T |
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| Q |
309 |
tgcttttattgaagaaattgacaagcaagagaaagctaagtatgtttagataagcaaact |
368 |
Q |
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| T |
1059230 |
tgcttttattgaagaaattgacaagcaagagaaagctaagtatgtttagataagcaaact |
1059289 |
T |
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