View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_high_29 (Length: 333)
Name: NF8911_high_29
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 320
Target Start/End: Complemental strand, 36929048 - 36928743
Alignment:
| Q |
15 |
aatatacaattctgctttgatggaaacaaattatacagaatgatttattatcgttaagatcatgaatcagtccaaagtcgtatatccttacaactttgtt |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36929048 |
aatatacaattctgctttgatggaaacaaattatacagaatgagttattatcgttaagatcatgaatcagtccaaagtcgtatatccttacaactttgtt |
36928949 |
T |
|
| Q |
115 |
tttatttcttctttggctttagacacaaagaaagttgcaaacactaattgaacaacatggcaacaagctcaaactaatgcaaaaagaaagaaccaaccaa |
214 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36928948 |
tttattttttctttggctttagacacaaagaaagttgcaaacactaattgaacaacatggcaacaagctcaaactaatgcaaaaagaaagaaccaaccaa |
36928849 |
T |
|
| Q |
215 |
agaaaatcatggacacaacgagaaagaacagttcccaaataacaggtcaattgtttaaggctactcgattctcccaattttttcatccagtaacagagct |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36928848 |
agaaaatcatggacacaacgagaaagaacagttcccaaataacaggtcaattgtttaaggctactcgattctcccaattttttcatccagtaacagagct |
36928749 |
T |
|
| Q |
315 |
ttgatg |
320 |
Q |
| |
|
|||||| |
|
|
| T |
36928748 |
ttgatg |
36928743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University