View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_high_33 (Length: 262)
Name: NF8911_high_33
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_33 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 10642974 - 10642720
Alignment:
| Q |
1 |
agacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtac |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10642974 |
agacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatcgtac |
10642875 |
T |
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| Q |
101 |
ataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10642874 |
ataaaagcaatcacacaactaagaaggatacacacaag-------cacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctacct |
10642782 |
T |
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| Q |
201 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccattttttaaatattatta |
262 |
Q |
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| T |
10642781 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccatttttttaatattatta |
10642720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 32712864 - 32713118
Alignment:
| Q |
1 |
agacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtac |
100 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32712864 |
agacccaaacagagaaggagacacagttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtac |
32712963 |
T |
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| Q |
101 |
ataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacct |
200 |
Q |
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| T |
32712964 |
ataaaagcaatcacacaactaagaaggatacacaca-------agcacaagacacacgtagcccataccagaaatcatgttatcctcactaagcctacct |
32713056 |
T |
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| Q |
201 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccattttttaaatattatta |
262 |
Q |
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| T |
32713057 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccattttttaaatattatta |
32713118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 23923675 - 23923929
Alignment:
| Q |
1 |
agacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataatacaaaaatagtac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
23923675 |
agacccaaacagagaaggatacatggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaatagacttataatacaaaaatagtac |
23923774 |
T |
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| Q |
101 |
ataaaagcaatcacacaactaagaaggatacacacaagcacatagcacaagacacatgtggcccataccagaaatcatgttatcctcactaagcctacct |
200 |
Q |
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|||||||||| ||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23923775 |
ataaaagcaaccacacaactaagaaggatacacaca-------aacacaagacacacgtggcccataccagaaatcatgttatcctcactaagcctacct |
23923867 |
T |
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| Q |
201 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccattttttaaatattatta |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23923868 |
tacatctcatttaaaaggatcaaactaacttagtttttacccccatttttttaatattatta |
23923929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Complemental strand, 3548 - 3462
Alignment:
| Q |
1 |
agacccaaacagagaaggatacatggttcttattgaaatatttttgatatttaacaagtatacgtacaaacccaataggcttataat |
87 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3548 |
agacccaaacagagaaggatacacggttcttattgaaatatttctgatatttaacaagtatacgtacaaacccaataggcttctaat |
3462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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