View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_high_35 (Length: 246)
Name: NF8911_high_35
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_high_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 246
Target Start/End: Original strand, 1527428 - 1527668
Alignment:
| Q |
6 |
gcagagaatacgtaggacttgttttgaaatttcagtttttattaaaagaatatgggatacgatgaataagctccagactatctggtcatggtggtaagta |
105 |
Q |
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| T |
1527428 |
gcagagaatacgtaggacttgttttgaaatttcagtttttattaaaagaatgtgggatacgatgaataaactccagactatctggtcatggtggtaagta |
1527527 |
T |
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| Q |
106 |
ttcaagcgtttatagaacccttaaaagttggctatcaagggggaggaatcaaaccactcaaatgcttcattgagcatctcatattgcttgtacttggtct |
205 |
Q |
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| T |
1527528 |
ttcaagcgtttatagaacccttaaaagttggctatcaagggggaggaatcaaaccactcaaatgcttcattgagcatctcatattgcttgtactcggtct |
1527627 |
T |
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| Q |
206 |
tcccggtctacccattcgtaggtagccctttctgagtcacc |
246 |
Q |
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| T |
1527628 |
tcccggtctacccattcgtaggtagccctttctgagtcacc |
1527668 |
T |
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