View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_106 (Length: 255)

Name: NF8911_low_106
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_106
NF8911_low_106
[»] chr3 (5 HSPs)
chr3 (1-245)||(11897148-11897392)
chr3 (5-246)||(26432605-26432846)
chr3 (89-246)||(23424497-23424654)
chr3 (131-246)||(53608336-53608451)
chr3 (92-246)||(38647179-38647333)
[»] chr8 (4 HSPs)
chr8 (1-245)||(23132488-23132732)
chr8 (89-192)||(26587277-26587380)
chr8 (155-246)||(38348466-38348557)
chr8 (71-151)||(14760016-14760096)
[»] chr2 (11 HSPs)
chr2 (1-245)||(14653583-14653827)
chr2 (92-241)||(26791322-26791471)
chr2 (95-246)||(40328174-40328325)
chr2 (95-246)||(35135219-35135370)
chr2 (80-189)||(16322502-16322611)
chr2 (92-189)||(573245-573342)
chr2 (95-246)||(3779048-3779199)
chr2 (92-237)||(177504-177649)
chr2 (92-143)||(35062956-35063007)
chr2 (107-189)||(19265469-19265551)
chr2 (87-173)||(42403209-42403295)
[»] chr1 (4 HSPs)
chr1 (1-245)||(20284849-20285093)
chr1 (80-247)||(50236550-50236717)
chr1 (92-247)||(50451893-50452048)
chr1 (131-189)||(23465403-23465461)
[»] chr4 (6 HSPs)
chr4 (95-246)||(54477407-54477558)
chr4 (89-199)||(14307826-14307936)
chr4 (89-199)||(14291777-14291887)
chr4 (92-189)||(3881771-3881868)
chr4 (89-241)||(46784469-46784621)
chr4 (155-246)||(33803974-33804065)
[»] scaffold0036 (1 HSPs)
scaffold0036 (92-182)||(75967-76057)
[»] chr5 (2 HSPs)
chr5 (92-198)||(32874457-32874563)
chr5 (92-246)||(7817131-7817285)
[»] chr6 (4 HSPs)
chr6 (89-246)||(24893833-24893990)
chr6 (89-173)||(24990660-24990744)
chr6 (83-189)||(13599639-13599745)
chr6 (132-189)||(35233542-35233599)
[»] chr7 (3 HSPs)
chr7 (86-189)||(16769956-16770059)
chr7 (95-228)||(1353794-1353927)
chr7 (92-237)||(1579159-1579304)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 11897392 - 11897148
Alignment:
Q  1 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  11897392 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttggacgactgctgagttgatagtagctgaaagcttttcc 11897293  T
Q  101 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11897292 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagt 11897193  T
Q  201 aactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  11897192 aactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 11897148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 5 - 246
Target Start/End: Original strand, 26432605 - 26432846
Alignment:
Q  5 aggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttccatgc 104  Q
    ||||| ||||||||||||||||||||||| |||||||| || ||| ||||||||||||||| ||| || ||||| |||||||| || |||||||||||||    
T  26432605 aggaggtgggataaatgcggccccgtaggagtgatttgaatcggttcccatcttccttgggtgacggcggagttgatagcagcggatagcttttccatgc 26432704  T
Q  105 aaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaact 204  Q
    ||| |||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||  |    
T  26432705 aaatgatgaagagataaggggacaatggatcaccttgtcggagaccatgagaaggtttgaaagacggcaacttgttcccattccaaagtatagagtagtt 26432804  T
Q  205 cggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
     |  ||||  || |||||||||||||| ||||||||||||||    
T  26432805 tgatgaagagacacaatgcatgatgagtttgatggtgatgtc 26432846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 246
Target Start/End: Complemental strand, 23424654 - 23424497
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| || ||||    
T  23424654 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttacctttcc 23424555  T
Q  189 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 246  Q
    | | ||| ||| ||   |||| || | || ||||| |||||||||||||||||||||||    
T  23424554 ataatattgag-aatgtggaggaggtgacacaatgtatgatgagcttgatggtgatgtc 23424497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 53608336 - 53608451
Alignment:
Q  131 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatga 230  Q
    |||||||| |||| ||| ||||| |||||| ||||||  ||||  ||||| ||||||||||| |||||| |  | |  || |  || |||||||||||||    
T  53608336 ggatcaccctgtctgagaccatgtgaaggcctgaaagaaggcattttgtttccattccaaagaatagagaaggtagaggaggaaacacaatgcatgatga 53608435  T
Q  231 gcttgatggtgatgtc 246  Q
    ||||||||||||||||    
T  53608436 gcttgatggtgatgtc 53608451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 246
Target Start/End: Original strand, 38647179 - 38647333
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    |||||||||||||| |  ||||| || || || || | |||||||||||||| ||| || || |||||||| ||||| ||||  || || || |||||||    
T  38647179 agcttttccatgcataaaatgaagaggtagggagagagcggatcaccttgtctgagaccgtgggaaggcttaaaagggggcattttattaccgttccaaa 38647278  T
Q  192 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    | |||||| |  | |  || |  || |||||||||||||||||||||||||||||    
T  38647279 gaatagagaaggtggatgatgaaacacaatgcatgatgagcttgatggtgatgtc 38647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 23132488 - 23132732
Alignment:
Q  1 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttcc 100  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23132488 aaataggagatgggataaatggggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcc 23132587  T
Q  101 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagt 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  23132588 atgcaaaggatgaaaagataaggggacaacgtatcaccttgtcggaggccatgagaaggcttgaaaggcggcaacttgttcccgttccaaagtatagagt 23132687  T
Q  201 aactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 245  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||    
T  23132688 aactaggagaagctacgcaatgcatgatgaacttgatggtgatgt 23132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 192
Target Start/End: Complemental strand, 26587380 - 26587277
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||| || ||||| ||||| ||||| || || || ||||| || |||||||||||||||||||| | ||||||||| || ||||| ||||| ||||| |    
T  26587380 gaaagtttctccatacaaagaatgaagaggtagggagacaatgggtcaccttgtcggaggccatgagtaggcttgaaggggggcaatttgttaccatttc 26587281  T
Q  189 aaag 192  Q
    ||||    
T  26587280 aaag 26587277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 38348557 - 38348466
Alignment:
Q  155 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    |||||||||||||| | |||  |||| ||||||||||| |||||| |  | || || |  || |||||||||||||||||||||||||||||    
T  38348557 gaaggcttgaaaggagacaatctgttgccattccaaaggatagagaaggtgggtgaggtaacacaatgcatgatgagcttgatggtgatgtc 38348466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 14760096 - 14760016
Alignment:
Q  71 gctgagtttatagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggcca 151  Q
    ||||| |||||||||   || ||||||||||| ||||| ||||| || || |||||||||||||| ||||| || ||||||    
T  14760096 gctgaatttatagcaatagagagcttttccatacaaagaatgaagaggtatggggacaacggatctccttggcgaaggcca 14760016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 14653583 - 14653827
Alignment:
Q  1 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttcc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||    
T  14653583 aaataggagatgggataaatgcggccccgtaggagtgatttggatgggtgcccatcttccttgggcaactgctgagtttatagcagcggatagcttttcc 14653682  T
Q  101 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagt 200  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14653683 atgcaaaggatgaaaaaataaggggacaacggatcaccttgttggaggccatgagaaggcttgaaaggcggcaacttgttcccattccaaagtatagagt 14653782  T
Q  201 aactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  14653783 aactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 14653827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 241
Target Start/End: Complemental strand, 26791471 - 26791322
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    ||||| ||||||||||| || ||||| || ||||| | ||||||||| || | ||||||||| | ||||| |||||| |||||| | || ||||||||||    
T  26791471 agcttctccatgcaaagaataaaaaggtacggggaaagcggatcaccctgcctgaggccatgagtaggctcgaaaggaggcaacctatttccattccaaa 26791372  T
Q  192 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 241  Q
    | |||||| | || |  ||||  |||||||||||||||||||||||||||    
T  26791371 gaatagagaagctggatgaagtaacgcaatgcatgatgagcttgatggtg 26791322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 40328325 - 40328174
Alignment:
Q  95 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 194  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  40328325 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattccataaaa 40328226  T
Q  195 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    | ||||| ||||| || |  || |||||||||||||| |||||||| |||||    
T  40328225 ttgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 40328174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 35135219 - 35135370
Alignment:
Q  95 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 194  Q
    |||||||| || ||||||||||||||||| |||||||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  35135219 ttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaaa 35135318  T
Q  195 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    | ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  35135319 ttgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 35135370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 189
Target Start/End: Complemental strand, 16322611 - 16322502
Alignment:
Q  80 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 179  Q
    |||||| | ||||| |||||||||||||| |||||||| || || || | ||| ||||||||||| |||||||| |  ||||||||||| |||| |||||    
T  16322611 atagcaacagaaagtttttccatgcaaagtatgaaaaggtacggagaaagcgggtcaccttgtcgaaggccatgagtgggcttgaaaggaggcatcttgt 16322512  T
Q  180 tcccattcca 189  Q
    | ||||||||    
T  16322511 ttccattcca 16322502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 573342 - 573245
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 189  Q
    ||||| ||||||||||||||||| || ||||| || | |||||||||||||| ||||||||| ||||| || |||||  |||  ||||| ||||||||    
T  573342 agcttctccatgcaaaggatgaataggtaaggagagagcggatcaccttgtctgaggccatgggaaggtttaaaaggatgcattttgttaccattcca 573245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 3779048 - 3779199
Alignment:
Q  95 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 194  Q
    |||||||| || ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| |||||||| |  |    
T  3779048 ttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattccataaca 3779147  T
Q  195 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
      ||||| || || || |  || |||||||||||||| |||||||| |||||    
T  3779148 atgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtc 3779199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 92 - 237
Target Start/End: Complemental strand, 177649 - 177504
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    |||||||||||||| | |||||| || ||||| ||||| || ||||||||||  || ||||| | |||||||| ||| ||| | ||||| ||||||||||    
T  177649 agcttttccatgcagatgatgaataggtaaggagacaaagggtcaccttgtcttagaccatgagtaggcttgataggaggccatttgtttccattccaaa 177550  T
Q  192 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 237  Q
    | | |||| |  | | |||||  || |||||||||||||| |||||    
T  177549 gaacagagaatgttgaagaagtgacacaatgcatgatgagtttgat 177504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 92 - 143
Target Start/End: Original strand, 35062956 - 35063007
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtc 143  Q
    ||||||||||| ||||||||||||||||| ||||| |  |||||||||||||    
T  35062956 agcttttccatacaaaggatgaaaagatagggggatagtggatcaccttgtc 35063007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 189
Target Start/End: Complemental strand, 19265551 - 19265469
Alignment:
Q  107 aggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 189  Q
    ||||||||||||||||| |||| ||| |||||||| || || ||||| | |||||||||||| |  | |||||| ||||||||    
T  19265551 aggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattcca 19265469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Original strand, 42403209 - 42403295
Alignment:
Q  87 ctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 173  Q
    ||||||||||||||||||| || || || |||||||| || |  || |||||||| ||||||||||| |  ||||||||||| ||||    
T  42403209 ctgaaagcttttccatgcacagtataaatagataaggtgagagagggtcaccttgccggaggccatgagtgggcttgaaaggaggca 42403295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 20285093 - 20284849
Alignment:
Q  1 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagtttatagcagctgaaagcttttcc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  20285093 aaataggagatgggataaatgcggccccgtaggggtgatttggatgggtgcccatcttccttgggcgactgctgagttgatagcagctgaaagcttttcc 20284994  T
Q  101 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagtatagagt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||   ||||| ||||||||||||||||    
T  20284993 atgcaaaggatgaaaagataaggggacaacggatcaccttgtcgcaggccatgagaaggctcgaaaggcggcaaccctttcccgttccaaagtatagagt 20284894  T
Q  201 aactcggagaagctacgcaatgcatgatgagcttgatggtgatgt 245  Q
    |||| ||||||||||||||||||||||||||||||||||||||||    
T  20284893 aactaggagaagctacgcaatgcatgatgagcttgatggtgatgt 20284849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 247
Target Start/End: Original strand, 50236550 - 50236717
Alignment:
Q  80 atagcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgt 179  Q
    |||||| |||| || || ||||| || | ||||||||| |||||||| | ||||||||||| || ||||||||| | |||||||||||| |||| |||||    
T  50236550 atagcaactgatagtttctccatacacaagatgaaaaggtaaggggaaagcggatcaccttatctgaggccatgagtaggcttgaaagggggcatcttgt 50236649  T
Q  180 tcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtcc 247  Q
    |||| ||||| |  ||||||||  | || || |  || |||||||||||||| ||| |||||||||||    
T  50236650 tcccgttccataagatagagtaggtgggtgaggagacacaatgcatgatgagtttggtggtgatgtcc 50236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 247
Target Start/End: Complemental strand, 50452048 - 50451893
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    ||||| ||||| ||||| ||||| || ||||| || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| |||||||| |    
T  50452048 agcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattccata 50451949  T
Q  192 gtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtcc 247  Q
      |||||| || | |||| || | || ||||||||||| || |||||||||||||||    
T  50451948 agatagagaaagt-ggaggaggtgacacaatgcatgataagtttgatggtgatgtcc 50451893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 23465461 - 23465403
Alignment:
Q  131 ggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 189  Q
    |||||||||||||| || ||||| | |||||||||| ||||||| ||||| ||||||||    
T  23465461 ggatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattcca 23465403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 246
Target Start/End: Original strand, 54477407 - 54477558
Alignment:
Q  95 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 194  Q
    |||||||||||||| ||||| |||||||||||||| ||||||||||| || || ||||| | |||||||||||  || | |||||| ||||||||||| |    
T  54477407 ttttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagcttgtttccattccaaagga 54477506  T
Q  195 tagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    || ||||  | |  || |  || |||||||||||||||||||||||||||||    
T  54477507 taaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtc 54477558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 14307936 - 14307826
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||| |||||||| |||| ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14307936 gaaagtttttccatacaaatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14307837  T
Q  189 aaagtatagag 199  Q
    |||| ||||||    
T  14307836 aaagaatagag 14307826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 89 - 199
Target Start/End: Complemental strand, 14291887 - 14291777
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||| |||||||| || | ||||||||| ||||| ||    ||||| ||||||| ||||||||| |||||||| |||||  ||| ||||||||||||||    
T  14291887 gaaagtttttccatacagatgatgaaaaggtaaggcgagggaggatctccttgtctgaggccatgggaaggcttaaaaggatgcatcttgttcccattcc 14291788  T
Q  189 aaagtatagag 199  Q
    |||| ||||||    
T  14291787 aaagaatagag 14291777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 3881868 - 3881771
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 189  Q
    ||||||||||| ||||| ||||| || ||| | || | |||||||||||||||||||||||| | ||| |||||| ||||||  ||||| ||||||||    
T  3881868 agcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcggcattttgttaccattcca 3881771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 241
Target Start/End: Original strand, 46784469 - 46784621
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||| |||| ||||||||||||||| || || || || |  |||||||||||||  |||||||| | ||| |||||||||||||| || || |||||||    
T  46784469 gaaagttttttcatgcaaaggatgaagaggtagggagatagaggatcaccttgtctaaggccatgagtaggtttgaaaggcggcaatttatttccattcc 46784568  T
Q  189 aaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtg 241  Q
    |||| |  ||| || | |  || |  || ||||||||||||||||||||||||    
T  46784569 aaaggacggagaaagttgatgacgtaacacaatgcatgatgagcttgatggtg 46784621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 246
Target Start/End: Complemental strand, 33804065 - 33803974
Alignment:
Q  155 gaaggcttgaaaggcggcaacttgttcccattccaaagtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
    |||||||||||||| ||||  ||||| |||||||| |||||||||||  | |  || |  || |||||||||||||||||||||||||||||    
T  33804065 gaaggcttgaaaggaggcattttgtttccattccacagtatagagtatgtagatgaggaaacacaatgcatgatgagcttgatggtgatgtc 33803974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 76057 - 75967
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 182  Q
    ||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||| | ||||||||| |  |||| ||||||||    
T  76057 agcttttccatgcaaaggatgaaaagataaggggacaactggtcaccttgtctgagaccatgagtaggcttgaaggaaggcagcttgttcc 75967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 32874457 - 32874563
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    |||||||||||||||| |||||| | ||| || || | ||| || ||||| ||||||||||| |||||||||||||| ||||||||||||||||| ||||    
T  32874457 agcttttccatgcaaatgatgaataaatagggagagagcgggtctccttggcggaggccatgagaaggcttgaaaggaggcaacttgttcccatttcaaa 32874556  T
Q  192 gtataga 198  Q
    | |||||    
T  32874557 ggataga 32874563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 246
Target Start/End: Complemental strand, 7817285 - 7817131
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    ||||||||||||||||| |||||||| ||||| || || || ||||| |||| ||| ||||| | |||||||||||  || |  |||||||||||||| |    
T  7817285 agcttttccatgcaaagaatgaaaaggtaaggagataaagggtcaccctgtctgagaccatgagtaggcttgaaagaaggaagtttgttcccattccata 7817186  T
Q  192 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgatggtgatgtc 246  Q
      ||||||||  | |  || | ||| |||||||||||||||||||| ||||||||    
T  7817185 aaatagagtagttggaggatgatacacaatgcatgatgagcttgattgtgatgtc 7817131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 89 - 246
Target Start/End: Original strand, 24893833 - 24893990
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcc 188  Q
    ||||||||||||||||| || |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||  ||||| |||||||    
T  24893833 gaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctgagaccatgtgtgggcttgaaagggggcattttgttaccattcc 24893932  T
Q  189 aaagtatagagtaactcggagaagct-acgcaatgcatgatgagcttgatggtgatgtc 246  Q
    | | ||| ||| ||   |||| || | || |||||||||||||||||||||||||||||    
T  24893933 ataatatggag-aatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Original strand, 24990660 - 24990744
Alignment:
Q  89 gaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggca 173  Q
    |||||||| ||||||||||| |||||||||||||| || | ||| |||||||||| ||| ||||| |  ||||||||||| ||||    
T  24990660 gaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctgagaccatgggtgggcttgaaagggggca 24990744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 13599745 - 13599639
Alignment:
Q  83 gcagctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcc 182  Q
    ||||||||||| |||||||| || | |||||| |||||||| || |  ||||||||||| |||||  |||| | |||||||||  |||| |||||||| |    
T  13599745 gcagctgaaagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttac 13599646  T
Q  183 cattcca 189  Q
    |||||||    
T  13599645 cattcca 13599639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 35233599 - 35233542
Alignment:
Q  132 gatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattcca 189  Q
    |||||||||||||||| ||||| | ||||||||||   ||||||||||| ||||||||    
T  35233599 gatcaccttgtcggagaccatgtgtaggcttgaaattaggcaacttgtttccattcca 35233542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 16769956 - 16770059
Alignment:
Q  86 gctgaaagcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccat 185  Q
    ||||| || |||||||| || | |||||| |||||||| || |  |||||||||||||| || ||||| | ||| |||||| ||||||| ||||| ||||    
T  16769956 gctgagagtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccat 16770055  T
Q  186 tcca 189  Q
    ||||    
T  16770056 tcca 16770059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 95 - 228
Target Start/End: Original strand, 1353794 - 1353927
Alignment:
Q  95 ttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaagta 194  Q
    |||||||| ||||| ||||||||||| || || |  ||||||||||||  ||||||||| | ||||||||| || | || ||| ||||||||| | || |    
T  1353794 ttttccatacaaagaatgaaaagatatggtgagagtggatcaccttgtatgaggccatgagtaggcttgaagggagacatctttttcccattcgagagga 1353893  T
Q  195 tagagtaactcggagaagctacgcaatgcatgat 228  Q
    ||||| || | |  || || ||||||||||||||    
T  1353894 tagagaaagtggaggaggcaacgcaatgcatgat 1353927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 237
Target Start/End: Original strand, 1579159 - 1579304
Alignment:
Q  92 agcttttccatgcaaaggatgaaaagataaggggacaacggatcaccttgtcggaggccatgcgaaggcttgaaaggcggcaacttgttcccattccaaa 191  Q
    ||||||||||||||||| || || || |||||||| | ||||||||| |||| ||| ||||| | ||| |  || || ||||||||||| | |||| | |    
T  1579159 agcttttccatgcaaagaataaagaggtaaggggagagcggatcaccctgtctgagcccatgagtaggatgaaagggaggcaacttgtttctattctaga 1579258  T
Q  192 gtatagagtaactcggagaagctacgcaatgcatgatgagcttgat 237  Q
    | |||||| || | | |||||  || |||||||||||||| |||||    
T  1579259 gaatagagaaagttgaagaagaaacacaatgcatgatgagattgat 1579304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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