View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_108 (Length: 253)

Name: NF8911_low_108
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_108
NF8911_low_108
[»] chr2 (21 HSPs)
chr2 (16-237)||(39473801-39474023)
chr2 (44-237)||(39390453-39390646)
chr2 (44-214)||(39458731-39458901)
chr2 (44-216)||(39222322-39222494)
chr2 (45-216)||(39390264-39390435)
chr2 (62-214)||(39603191-39603343)
chr2 (68-235)||(39458587-39458754)
chr2 (46-141)||(39415738-39415833)
chr2 (38-118)||(39136881-39136961)
chr2 (44-179)||(39192554-39192689)
chr2 (44-179)||(39198234-39198369)
chr2 (78-179)||(39451757-39451858)
chr2 (77-212)||(39602996-39603131)
chr2 (44-141)||(39390129-39390226)
chr2 (62-141)||(39222550-39222629)
chr2 (38-141)||(39415486-39415589)
chr2 (44-104)||(38792578-38792638)
chr2 (44-113)||(39221692-39221761)
chr2 (38-151)||(39389699-39389812)
chr2 (48-104)||(38792461-38792517)
chr2 (14-82)||(39415161-39415229)
[»] chr7 (1 HSPs)
chr7 (38-235)||(19807242-19807439)
[»] chr5 (1 HSPs)
chr5 (86-216)||(17059267-17059397)


Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 39474023 - 39473801
Alignment:
Q  16 cattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccagg 115  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  39474023 cattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttgaaagccagg 39473924  T
Q  116 tgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39473923 tgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtc 39473824  T
Q  216 tgagaa-gaagcaacttgatgtc 237  Q
    ||| || ||||||||||||||||    
T  39473823 tgacaaggaagcaacttgatgtc 39473801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 44 - 237
Target Start/End: Complemental strand, 39390646 - 39390453
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 143  Q
    |||||||||||||||| | |||  |||||||| ||||||||||||||||| |||||||||| ||| ||||  ||||||  || |||||||||| |||| |    
T  39390646 agtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagca 39390547  T
Q  144 tttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaagaagcaacttgatgtc 237  Q
    ||| ||||  ||||||||||| |||||| ||||||| || ||||||||||||||||||||||||||||||||| |  |||||||| ||||||||    
T  39390546 ttttgaaagccaagtggaggagctcaaaacagaagagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaatttgatgtc 39390453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 44 - 214
Target Start/End: Original strand, 39458731 - 39458901
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 143  Q
    |||| ||||||||||| ||||||||||||| ||| |  |||||||||||| |||||||||| ||| |||| ||||||| ||| ||||||||||||||       
T  39458731 agtctaaagagaagcaacttgatggccgaggggaagtacatgaatcaaaaaagagagaattcgaaggccatgtgaaggagctcgaatctaaaaagaattg 39458830  T
Q  144 tttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagt 214  Q
    ||| ||||  ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  39458831 ttttgaaagtcaagtggaggagctcaaatcaaaagagagacaattgaaaggacaagttaaggaacttgagt 39458901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 39222322 - 39222494
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 143  Q
    |||| ||||||||||| ||||| |||| |||| |||||||| |||||||| |||||| ||| ||| ||||  ||||||  || ||||| ||||||||| |    
T  39222322 agtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggccaactgaaggaactggaatccaaaaagaagca 39222421  T
Q  144 tttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtct 216  Q
    ||| ||||  |||||||||||  |||||||| |||| || |||||||||||||| ||||||||| ||||||||    
T  39222422 ttttgaaaatcaagtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtct 39222494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 45 - 216
Target Start/End: Complemental strand, 39390435 - 39390264
Alignment:
Q  45 gtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaat 144  Q
    ||||||||||||||| | |||  |||||||| ||||||||| ||||||| |||||||||| ||| ||||  ||||||  || |||||||||| |||| ||    
T  39390435 gtcaaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcat 39390336  T
Q  145 ttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtct 216  Q
    || ||||  ||||||||||| |||||| || |||  |  |||||||||||| ||||||||||||||||||||    
T  39390335 tttgaaagccaagtggaggagctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtct 39390264  T

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Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 214
Target Start/End: Original strand, 39603191 - 39603343
Alignment:
Q  62 ttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtgga 161  Q
    |||| ||||||| | ||||||||||||||||| |||||||||| ||||  || | ||||| ||| ||||||||||||||| |||| ||||  ||||||||    
T  39603191 ttgaaggccgagcgaaggagcatgaatcaaaagagagagaatttgaaattcaagcgaaggagctggaatctaaaaagaagcattttgaaagccaagtgga 39603290  T
Q  162 ggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagt 214  Q
    |||  ||| |||| ||    | |||||||||||||||||||||||||||||||    
T  39603291 ggagttcacatcaaaactgtggcaattgaaaggacaagttaaggaacttgagt 39603343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 235
Target Start/End: Original strand, 39458587 - 39458754
Alignment:
Q  68 gccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatct 167  Q
    ||||| || |||||| ||| |||||| ||||||| || |||   |||||||||| ||| |||||| ||||||||| ||| ||||  |||||||||||  |    
T  39458587 gccgaatgaaggagcttgagtcaaaaaagagagattttgaagagcaggtgaaggagctggaatctgaaaagaagagttttgaaagccaagtggaggagtt 39458686  T
Q  168 caaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaagaagcaacttgatg 235  Q
    |  |||| || | || ||||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  39458687 cgtatcacaacagaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatg 39458754  T

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Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 46 - 141
Target Start/End: Complemental strand, 39415833 - 39415738
Alignment:
Q  46 tcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 141  Q
    |||||||||||||||| ||| ||||| ||| | ||||||| ||||||| |||||||||| ||| |||||||||||| |||  ||||||||||||||    
T  39415833 tcaaaagagaagcagcatgaaggccgggtgaatgagcatgcatcaaaagagagagaatttgaaggccaggtgaaggagctgaaatctaaaaagaag 39415738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 38 - 118
Target Start/End: Original strand, 39136881 - 39136961
Alignment:
Q  38 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtga 118  Q
    ||||| |||||||||||||||||| ||| ||||| ||| ||||||||| ||||||| |||||||||| |||||||| ||||    
T  39136881 agcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaaagccaagtga 39136961  T

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Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 39192689 - 39192554
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 143  Q
    |||||||||||||||| | ||| | || |||| |||||| |||||||||| |||||||||| ||| |||| |||||||  || ||||||| ||||||| |    
T  39192689 agtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagca 39192590  T
Q  144 tttagaaatgcaagtggaggatctcaaatcagaaga 179  Q
    |||  |||  |||||||||||  |||||||| ||||    
T  39192589 ttttaaaagtcaagtggaggagttcaaatcaaaaga 39192554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 44 - 179
Target Start/End: Complemental strand, 39198369 - 39198234
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaa 143  Q
    |||||||||||||||| | ||| | || |||| |||||| |||||||||| |||||||||| ||| |||| |||||||  || ||||||| ||||||| |    
T  39198369 agtcaaaagagaagcatcatgaagtccaagtgaaggagcgtgaatcaaaagagagagaattcgaaggccaagtgaaggaacttgaatctagaaagaagca 39198270  T
Q  144 tttagaaatgcaagtggaggatctcaaatcagaaga 179  Q
    |||  |||  |||||||||||  |||||||| ||||    
T  39198269 ttttaaaagtcaagtggaggagttcaaatcaaaaga 39198234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 179
Target Start/End: Original strand, 39451757 - 39451858
Alignment:
Q  78 ggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaa 177  Q
    ||||||||||||||||  ||||||||| ||| || | |||||||  || ||||||||||||||| |||| ||||  ||||||||||| ||||||||| ||    
T  39451757 ggagcatgaatcaaaagtgagagaatttgaaggcaaagtgaaggatctggaatctaaaaagaagcattttgaaagccaagtggaggagctcaaatcaaaa 39451856  T
Q  178 ga 179  Q
    ||    
T  39451857 ga 39451858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 77 - 212
Target Start/End: Original strand, 39602996 - 39603131
Alignment:
Q  77 aggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcaga 176  Q
    ||||||||||||||||| | ||||| || ||| |||| |||| || ||| ||||||||||||||| |||| ||||  || |||||||| |||| |||| |    
T  39602996 aggagcatgaatcaaaagaaagagagtttgaaggccaagtgacggagctggaatctaaaaagaagcattttgaaagccatgtggaggagctcacatcaaa 39603095  T
Q  177 agaaagacaattgaaaggacaagttaaggaacttga 212  Q
         | |||||||||||||| ||||||||||||||    
T  39603096 tctgtggcaattgaaaggacaggttaaggaacttga 39603131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 39390226 - 39390129
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 141  Q
    |||||||||||||||| | |||  |||||||| ||||||||||||| ||| ||||||| || ||| ||||  ||||||  || |||||||||||||||    
T  39390226 agtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatctaaaaagaag 39390129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 141
Target Start/End: Original strand, 39222550 - 39222629
Alignment:
Q  62 ttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaag 141  Q
    |||| |||||| || ||||||||||||||||| |||||||||| ||||  || ||||||| |||  ||||||||||||||    
T  39222550 ttgaaggccgaatgaaggagcatgaatcaaaagagagagaatttgaaattcaagtgaaggagctgcaatctaaaaagaag 39222629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 39415589 - 39415486
Alignment:
Q  38 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaa 137  Q
    ||||| || ||||||||||||| | ||| || | |||| |||||  |||||||||| ||||||||||  ||||||| |||| || ||| |||||||||||    
T  39415589 agcttgaggcaaaagagaagcaacatgaaggtcaagtgaaggagtgtgaatcaaaagagagagaatttaaaagccaagtgagggagctggaatctaaaaa 39415490  T
Q  138 gaag 141  Q
    ||||    
T  39415489 gaag 39415486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 38792578 - 38792638
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaatt 104  Q
    |||| ||||||||||| | ||| ||||  ||||||||||||||||||||| ||||||||||    
T  38792578 agtcgaaagagaagcaacatgaaggccaggtggaggagcatgaatcaaaaaagagagaatt 38792638  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 113
Target Start/End: Original strand, 39221692 - 39221761
Alignment:
Q  44 agtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagcca 113  Q
    |||||||||||||||| | ||| ||| | ||| ||||||||| ||||||| |||||||||| ||| ||||    
T  39221692 agtcaaaagagaagcaacatgaaggctgggtgaaggagcatggatcaaaagagagagaatttgaaggcca 39221761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 39389812 - 39389699
Alignment:
Q  38 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaa 137  Q
    ||||| ||||||||| |||||| ||||| | || | || ||||||||||||||||  |||  ||||| ||| | || | ||||| ||| |||||||||||    
T  39389812 agcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcatgaatcaaaggagaaggaatttgaaggtcaagcgaaggagctggaatctaaaaa 39389713  T
Q  138 gaagaatttagaaa 151  Q
    |||| |||| ||||    
T  39389712 gaagcatttcgaaa 39389699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 104
Target Start/End: Original strand, 38792461 - 38792517
Alignment:
Q  48 aaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaatt 104  Q
    |||||||||||||| ||| || || ||| |||||||||||||||||  |||||||||    
T  38792461 aaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatt 38792517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 39415229 - 39415161
Alignment:
Q  14 atcattttgaaggccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagc 82  Q
    ||||||||||| |||| ||| || ||||| |||||||||||||||| | ||| || |||||| ||||||    
T  39415229 atcattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 235
Target Start/End: Original strand, 19807242 - 19807439
Alignment:
Q  38 agcttaagtcaaaagagaagcagcttgatggccgagtggaggagcatgaatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaa 137  Q
    ||||| |||||||||||||||||| ||| |||||  || ||||||||| ||||||| |||||||||| ||||||||  ||| || ||   ||||||||||    
T  19807242 agcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaaagccaaatgatggagcagcaatctaaaaa 19807341  T
Q  138 gaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagacaattgaaaggacaagttaaggaacttgagtctgagaagaagcaacttgatg 235  Q
    ||||   || ||||  ||||||||||| || |||||| |||| |||||     ||||||||||||| |||||||||||| |   ||||||||||||||    
T  19807342 gaagctgtttgaaagccaagtggaggagcttaaatcaaaagagagacatactcaaggacaagttaaagaacttgagtctaaagcgaagcaacttgatg 19807439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 86 - 216
Target Start/End: Original strand, 17059267 - 17059397
Alignment:
Q  86 aatcaaaacagagagaattggaaagccaggtgaaggggctagaatctaaaaagaagaatttagaaatgcaagtggaggatctcaaatcagaagaaagaca 185  Q
    |||||||| |||| ||||| ||| |||  ||||||| ||| ||||||||||| ||| |||| || || ||||||||||| ||||||||| |||| || ||    
T  17059267 aatcaaaagagagtgaatttgaaggcctagtgaaggagctggaatctaaaaaaaaggattttgatatccaagtggaggagctcaaatcaaaagagaggca 17059366  T
Q  186 attgaaaggacaagttaaggaacttgagtct 216  Q
    |||| ||||| ||||| |||| |||||||||    
T  17059367 attggaaggagaagttcaggatcttgagtct 17059397  T

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