View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_112 (Length: 243)
Name: NF8911_low_112
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_112 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 51 - 232
Target Start/End: Original strand, 16722505 - 16722686
Alignment:
| Q |
51 |
caacttgtgcacatctagtatatttcatgaaatgttcactttgcatctgcaaaactatcttagtgaaggttcggatgcacttcatttctaatcagtgatg |
150 |
Q |
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| T |
16722505 |
caacttgtgcacatctagtatatttcatgaaatgttcactttgcatctgcaaaactatcttagtgaaggttcggatgcacttcatttctaatcagtgatg |
16722604 |
T |
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| Q |
151 |
tggtttagtattttgcaatgatcactcgtagttaccttgatttttgcaatgatcactcgtagatagtattttgattgatgtc |
232 |
Q |
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| T |
16722605 |
tggtttagtattttgcaatgatcactcgtagttaccttgatttttgcaatgatcactcgtagatagtattttgattgatgtc |
16722686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 53 - 195
Target Start/End: Original strand, 10694056 - 10694198
Alignment:
| Q |
53 |
acttgtgcacatctagtatatttcatgaaatgttcactttgcatctgcaaaactatcttagtgaaggttcggatgcacttcatttctaatcagtgatgtg |
152 |
Q |
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| T |
10694056 |
acttgtgcacatctagtatatttcatgaaatgttcacatcgcattttcaaagctatcttagtgaaggtttgggtacacttcatttctaatcagtgatgtg |
10694155 |
T |
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| Q |
153 |
gtttagtattttgcaatgatcactcgtagttaccttgattttt |
195 |
Q |
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| T |
10694156 |
gtttagtattttgcaattatcactcgtagttaccttgattttt |
10694198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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