View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_113 (Length: 241)
Name: NF8911_low_113
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_113 |
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| [»] scaffold0777 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 8284569 - 8284357
Alignment:
| Q |
10 |
gtttcgtgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttg |
109 |
Q |
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| T |
8284569 |
gtttcttgttgtggatgaatcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttg |
8284470 |
T |
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| Q |
110 |
taatcgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttc |
209 |
Q |
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| T |
8284469 |
taattgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttc |
8284370 |
T |
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| Q |
210 |
catcttggctttg |
222 |
Q |
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| T |
8284369 |
catcttggctttg |
8284357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 218
Target Start/End: Complemental strand, 34694601 - 34694435
Alignment:
| Q |
52 |
acttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggtt |
151 |
Q |
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| T |
34694601 |
acttgcggttttgaaaccagtaaaagacactggaatcaccaacttggccaaattcttctaattgttcacgtatcttcttaatctcatctctacgtggatt |
34694502 |
T |
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| Q |
152 |
caccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggc |
218 |
Q |
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| T |
34694501 |
cgtcgtccctgagttatagatggcttcaagaatgtggatttgctcaggttttgggatccatcttggc |
34694435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 218
Target Start/End: Complemental strand, 34686670 - 34686503
Alignment:
| Q |
51 |
gacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggt |
150 |
Q |
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| T |
34686670 |
gacttgcggttttgaaaccagtaaaagacactcgcatcaccaatttgtccaaattcttgtaattgttctcgtatcttcttgatttcatctacaggtggat |
34686571 |
T |
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| Q |
151 |
tcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggc |
218 |
Q |
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| T |
34686570 |
tcttcatccctgagttgtagatggcttcaagaatgcggatttgctcaggctttggaatccatcttggc |
34686503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 34682445 - 34682347
Alignment:
| Q |
29 |
tcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatctt |
127 |
Q |
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| T |
34682445 |
tcttttcttttgtttgcttctggagttacggttttgaaaccagtaagaaacattaacagcaccaacttgtccaaacccttgtagttgttcatgtatctt |
34682347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 222
Target Start/End: Complemental strand, 4393502 - 4393334
Alignment:
| Q |
54 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttca |
153 |
Q |
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| T |
4393502 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgccctaatcttccttatttcttctcttggtggattca |
4393403 |
T |
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| Q |
154 |
ccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggttccatcttggctttg |
222 |
Q |
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| T |
4393402 |
ccattccagaattgaagatagcttcaagtatgcggatttgttctggttttggattccaccttggctttg |
4393334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 222
Target Start/End: Complemental strand, 5781 - 5667
Alignment:
| Q |
108 |
tgtaatcgttcacgtatcttcgtaatttcctcccttggtgggttcaccatccctgagttgaaaatggcttcgagaatgcgaatttgttgtggttttgggt |
207 |
Q |
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| T |
5781 |
tgtaattgttcatgtatcttattaatctcatctctttgtggattcaccatccctgagttgaagaggacttcgagaatgcggatttgctcaagctttggat |
5682 |
T |
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| Q |
208 |
tccatcttggctttg |
222 |
Q |
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| T |
5681 |
tccatcttggctttg |
5667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 93
Target Start/End: Complemental strand, 6145 - 6081
Alignment:
| Q |
29 |
tcttttcttttgtttgcttcgagacttgcggttttgaaaccagtaaaagacattggcatcaccaa |
93 |
Q |
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| T |
6145 |
tcttttcttttgtatgcttatggacttgcggttttgaaacgagtaaaagacgctagcatcaccaa |
6081 |
T |
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