View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_12 (Length: 745)
Name: NF8911_low_12
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 517; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 180 - 729
Target Start/End: Original strand, 14302063 - 14302612
Alignment:
| Q |
180 |
ttacgctgaaagtgtataaaaattaatctatttgttttttcccccttatttggtgaaaggattataaaatacatgtataacaccattgattaacacctag |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14302063 |
ttacgctgaaagtgtataaaaattaatctatttgttttttcccccttatttggtgaaaggattataaaatacatgtataacaccattgattaacacctac |
14302162 |
T |
|
| Q |
280 |
atcatgagtattgtcactcactattggtaagataacttgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgtgagc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14302163 |
atcatgagtattgtcactcactattggtaagataacttgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacttgtgagc |
14302262 |
T |
|
| Q |
380 |
atatacataccattatagagtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctg |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14302263 |
atatacataccattatagagtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctg |
14302362 |
T |
|
| Q |
480 |
caacaaaaatagagaatcaggaacttcattcgtgactgcattagnnnnnnnctgacgttatcattttgattgatataatataatgtttctaaaatgagaa |
579 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14302363 |
caacaaaaatagagaatcaggaacttcattcgtgactgcattagaaaaaaactgacgttatcattttgattaatataatataatgtttctaaaatgagaa |
14302462 |
T |
|
| Q |
580 |
acatcgttatatcactaaaaactagaaaattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagc |
679 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14302463 |
acatcgttatatcactaaaaactagaaaattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagc |
14302562 |
T |
|
| Q |
680 |
atcaacagcactgaatacatcatcaaggagatagatgtcactgtcctgat |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14302563 |
atcaacagcactgaatacatcatcaaggagatagatgtcactgtcctgat |
14302612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 14301807 - 14302016
Alignment:
| Q |
1 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaagtttctcagttgaacttgaaaaaactttaatgtttaa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14301807 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaagtttctcagttgaacttgaaaaaactttaatgtttaa |
14301906 |
T |
|
| Q |
101 |
ggttatttattgcaaacaagttatcagttctcagcaatctcaaaaatgatgactgtgatagattaacagtgcnnnnnnnttacgctgaaagtgtataaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14301907 |
ggttatttattgcaaacaagttatcagttctcagcaatctcaaaaatgatgactgtgatagattaacagtgcaaaaaaattacgctgaaagtgtataaaa |
14302006 |
T |
|
| Q |
201 |
attaatctat |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
14302007 |
attaatctat |
14302016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 184 - 509
Target Start/End: Original strand, 14280669 - 14280995
Alignment:
| Q |
184 |
gctgaaagtgtataaaaattaatctatttgttttttcccccttatttggtgaaaggattataaaatacatgtataacaccattgattaacacctag---a |
280 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| |||| ||||||||||||||||| ||| || |||| |||| |||| |||| ||| ||||| | |
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|
| T |
14280669 |
gctgaaagtgcataaaaattaatttatttgttttctccc--ttatttggtgaaaggatgatagaacacatatataccacctttgaataagacctaccaca |
14280766 |
T |
|
| Q |
281 |
tcatgagtattgtcactcactattggtaagataacttgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgtgagca |
380 |
Q |
| |
|
| ||||||| || |||||||||||||||||||| |||||||||| ||||||||| ||||||| | |||| ||||||||||||||||| |||||||| |
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|
| T |
14280767 |
ttatgagtactgctactcactattggtaagataatttgggagaaattgaattgaatcatcatttatagaaaatctcaaacattttagggacttgtgagca |
14280866 |
T |
|
| Q |
381 |
tatacataccattatagagtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgc |
480 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||||||||| |
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|
| T |
14280867 |
tatacataccattatagagtcgacattatgcaagaaatcaacttgatgtgttacaagtaaaacagttttatctttaagagttcccatgatacattcctgc |
14280966 |
T |
|
| Q |
481 |
aacaaaaatagagaatcaggaacttcatt |
509 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
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|
| T |
14280967 |
aacaaaaatagagaatcaggaaattcatt |
14280995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 586 - 729
Target Start/End: Original strand, 14281085 - 14281228
Alignment:
| Q |
586 |
ttatatcactaaaaactagaaaattaagctatttagcacttcttgtaagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaac |
685 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14281085 |
ttatatcattaaaaactagaaaatgaagctatttagcccttcttgtaagttttaactttgtgcttgccttaaaaataaatgatcctgtttgagcatcaac |
14281184 |
T |
|
| Q |
686 |
agcactgaatacatcatcaaggagatagatgtcactgtcctgat |
729 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
14281185 |
ggcactgaatacatcatcaaggagatagatgtcactgtcttgat |
14281228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14280044 - 14280169
Alignment:
| Q |
1 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagcc-aagtttctcagttgaacttgaaaaaactttaatgttta |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||| |
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|
| T |
14280044 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaaagtttctcag------ttgaaagaacttgaatgttta |
14280137 |
T |
|
| Q |
100 |
aggttatttattgcaaacaagttatcagttct |
131 |
Q |
| |
|
||| |||||||||||||||||||||||||||| |
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|
| T |
14280138 |
aggctatttattgcaaacaagttatcagttct |
14280169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 385 - 485
Target Start/End: Original strand, 14318695 - 14318795
Alignment:
| Q |
385 |
cataccattatagagtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaaca |
484 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||| |||| |
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|
| T |
14318695 |
cataccattatagagtcaacattatgcaagaaatcaacttggtgggttacaagtaaaacagtcttatctttgagagctcccatgatacattcctgtaaca |
14318794 |
T |
|
| Q |
485 |
a |
485 |
Q |
| |
|
| |
|
|
| T |
14318795 |
a |
14318795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 631 - 729
Target Start/End: Original strand, 14318962 - 14319060
Alignment:
| Q |
631 |
taagttgtaactttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaaggagatagatgtcactgtcctgat |
729 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
14318962 |
taagttgtaaatttttgcttaccttaaaaataaatgatcctgtttcagcatcaacagcactgaatacatcatcaaggagatagatgtcagtgtcatgat |
14319060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 14318230 - 14318292
Alignment:
| Q |
1 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggtatcaaaacaagccaa |
63 |
Q |
| |
|
||||||||||| |||||||||||||| |||||||||||| || |||||||||||| ||||||| |
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|
| T |
14318230 |
tttccactttgtactactctcccttcacgcatcacctttaaagttggtatcaaaataagccaa |
14318292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 538 - 571
Target Start/End: Original strand, 14318839 - 14318872
Alignment:
| Q |
538 |
tatcattttgattgatataatataatgtttctaa |
571 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |
|
|
| T |
14318839 |
tatcattttgattgatataatatattgtttctaa |
14318872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 301 - 497
Target Start/End: Original strand, 25883867 - 25884065
Alignment:
| Q |
301 |
tattggtaagataacttgggagaaactgaattgaactgtcatttacataaaaaatcaaacattttagggacctgt---gagcatatacataccattatag |
397 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||| | ||||| ||| ||||| |||||||||||||| || ||| |||| ||||||||||||||||| |
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|
| T |
25883867 |
tattggtaagataacttgggaaaaattgaattgagccatcattaacagaaaaactcaaacattttaggtacttgttgtgagcttatacataccattatag |
25883966 |
T |
|
| Q |
398 |
agtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaactgccttatctttgagagttcccatgatacattcctgcaacaaaaatagagaatc |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||| ||||||||||||||||||||| ||| |||||||||| |
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|
| T |
25883967 |
agtcaacattatgcaagaaatcaacttggtgtgttacaagtaaaaccgtcttatctttcagagctcccatgatacattcctgcaa-aaagatagagaatc |
25884065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 641 - 729
Target Start/End: Original strand, 25884153 - 25884241
Alignment:
| Q |
641 |
ctttgtgcttaccttaaaaataaatgatcctgtttgagcatcaacagcactgaatacatcatcaaggagatagatgtcactgtcctgat |
729 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
25884153 |
ctttgttcttactttaaaaataaacgatcctgtttgagcatcaacagcactgaatatatcatcaaggagatagatgtcagtgtcctgat |
25884241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25883650 - 25883697
Alignment:
| Q |
1 |
tttccactttgcactactctcccttctcgcatcacctttgaaattggt |
48 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| || ||||| |
|
|
| T |
25883650 |
tttccactttgcactactctcccttcacgcatcacctttaaagttggt |
25883697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 675 - 720
Target Start/End: Original strand, 39664797 - 39664842
Alignment:
| Q |
675 |
tgagcatcaacagcactgaatacatcatcaaggagatagatgtcac |
720 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
39664797 |
tgagcatcaactgcactgaatacatcatcaagaagatatatgtcac |
39664842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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