View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_14 (Length: 744)

Name: NF8911_low_14
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_14
NF8911_low_14
[»] chr4 (8 HSPs)
chr4 (348-728)||(16410725-16411099)
chr4 (83-279)||(16411162-16411360)
chr4 (1-84)||(26093274-26093356)
chr4 (1-82)||(5024526-5024607)
chr4 (15-83)||(22735168-22735236)
chr4 (9-83)||(7717987-7718058)
chr4 (14-82)||(1933209-1933277)
chr4 (24-81)||(36155687-36155744)
[»] chr3 (1 HSPs)
chr3 (1-83)||(41078983-41079065)
[»] chr1 (2 HSPs)
chr1 (1-83)||(2620203-2620285)
chr1 (15-82)||(28989666-28989733)
[»] chr6 (6 HSPs)
chr6 (1-82)||(31386997-31387078)
chr6 (1-83)||(12838591-12838673)
chr6 (15-82)||(6428087-6428154)
chr6 (1-82)||(31202829-31202910)
chr6 (9-81)||(25991254-25991326)
chr6 (17-82)||(32093389-32093454)
[»] scaffold0006 (1 HSPs)
scaffold0006 (1-88)||(187567-187654)
[»] chr8 (3 HSPs)
chr8 (1-83)||(45470199-45470281)
chr8 (1-81)||(37094431-37094511)
chr8 (15-82)||(17506146-17506213)
[»] chr5 (1 HSPs)
chr5 (1-82)||(17524063-17524144)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-84)||(33975-34058)
[»] chr2 (1 HSPs)
chr2 (4-82)||(37441392-37441470)
[»] chr7 (1 HSPs)
chr7 (4-82)||(21493647-21493725)


Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 348 - 728
Target Start/End: Complemental strand, 16411099 - 16410725
Alignment:
Q  348 ggttcaactgcgtcaaaacttcttcaacattgctgtgaaagcgcattcttctagcacaaggtaggtaacactgtaatttctactatattttttgttgtgt 447  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  16411099 ggttcaactgcgtcaaaatatcttcaacattgctgtgaaagcgcattcttctagcacaaggaaggtaacactgtaatttctactatattttttattgtgt 16411000  T
Q  448 atttatactctaatattctgctttataatcgttctttcagttttatttttagcataacttcaagtcagcttaataatcatctagtttttactcnnnnnnn 547  Q
    ||||||||||||||||||||||| |||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||            
T  16410999 atttatactctaatattctgcttcataatcgttctttcagtttta------gcataacttcaagtcagcttaataatcatctagtttttacttttttttt 16410906  T
Q  548 gttgcttcattttagtcattgtatgtagctattttaatctatgaagcacgaacacctctaggactaggcggcgtgtcgtgtacatgtgtcgggtgtccga 647  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||    
T  16410905 gttgcttcattttagtcattgtatgtagctattttaatctatgaagcacggacacctctaggactaggcagcgtgtcgtgtacatgtgtcaggtgtccga 16410806  T
Q  648 tactagtaggacacatgttggattaattcagacaagtgtccgaaacaaatttattttttcctttgcctcaacacttttttg 728  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||||||||||    
T  16410805 tactagtaggacacatgttggattaactcagacaagtgtccgaaacaaatttgttttttcctttgcttctacacttttttg 16410725  T

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Target: chr4; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 83 - 279
Target Start/End: Complemental strand, 16411360 - 16411162
Alignment:
Q  83 tcttaaacgactatcattttgatacatagggaatattaaaagaaactattagtttt--agtgttaatttccacttgtcctattttaagtagtgaatagca 180  Q
    |||||||||||||||| ||||| ||| | |||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  16411360 tcttaaacgactatcagtttgagacagatggaatattaaaagaaactattagttttttagtgttaatttccacttgtcctattttaagtagtgaatagca 16411261  T
Q  181 catacattattttaacaactgcagagacaatgattatttatgtgcattcatttcattccatagtgaagaagattaaaggacgcttagttttctgagcat 279  Q
    ||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||    
T  16411260 catacattactttaacaactgcagagagaatgataatttatgtgcattcatttcattccataatgaagaagattacaggacgctttgttttctgagcat 16411162  T

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Target: chr4; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 26093356 - 26093274
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgtc 84  Q
    |||||||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26093356 cctcagtaatatccattactgacaaattt-gtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgtc 26093274  T

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Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 5024526 - 5024607
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    ||||||||||||| |||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5024526 cctcagtaatatctattactaacagattttgtgcattattgagggtttatttccgccagtaataagcaaatttcttgtagtg 5024607  T

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Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 22735236 - 22735168
Alignment:
Q  15 attactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22735236 attactgagggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 22735168  T

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Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 7717987 - 7718058
Alignment:
Q  9 atatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||   |||||||||||||||||||||||    
T  7717987 atatccattactgacagattttgtgcattattgagggtttatttccgcc---aataagcaaatttcttgtagtgt 7718058  T

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Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 1933277 - 1933209
Alignment:
Q  14 cattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||||||| ||||||||||||||||||||| |||||||||| | |||||| ||||||||||||||||    
T  1933277 cattactgacagattttgtgcattattgagggtttatttccgcaaataataaacaaatttcttgtagtg 1933209  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 36155687 - 36155744
Alignment:
Q  24 ggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagt 81  Q
    ||||||| ||| |||||||||| ||| ||||| || ||||||||||| ||||||||||    
T  36155687 ggattttatgctttattgagggtttaattccgtcaataataagcaaaattcttgtagt 36155744  T

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Target: chr3 (Bit Score: 79; Significance: 2e-36; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 41078983 - 41079065
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41078983 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaatgagcaaatttcttgtagtgt 41079065  T

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Target: chr1 (Bit Score: 79; Significance: 2e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 2620203 - 2620285
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2620203 cctcagtaatatccattactgacagattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 2620285  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 28989733 - 28989666
Alignment:
Q  15 attactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    ||||| || |||||||| ||||||||||||| ||||||||||| |||| || |||| |||||||||||    
T  28989733 attaccgagggattttgggcattattgagggattatttccgccggtaaaaaccaaaattcttgtagtg 28989666  T

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Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 31387078 - 31386997
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31387078 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaatgagcaaatttcttgtagtg 31386997  T

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Target: chr6; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 12838673 - 12838591
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||    
T  12838673 cctcagtaatatcaattactgacagattttgtgcattattgagggtttatttccgccagtaataagtaaatttcttgcagtgt 12838591  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 15 - 82
Target Start/End: Complemental strand, 6428154 - 6428087
Alignment:
Q  15 attactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6428154 attactgacagattttgtgcattactgagggcttatttccgccagtaataagcaaatttcttgtagtg 6428087  T

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Target: chr6; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 31202829 - 31202910
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||||||||| |||||||||| |||||||||||||||| |||| ||| ||| |||||||||||||||| |||||||||||    
T  31202829 cctcagtaatattcattactgacagattttgtgcattattaagggtttagttcagccagtaataagcaaaattcttgtagtg 31202910  T

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Target: chr6; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 25991326 - 25991254
Alignment:
Q  9 atatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagt 81  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||| |||| ||||||||||||||||||||||    
T  25991326 atatccattactgacagattttgtgcattattaagggtttatttctgccaataataagcaaatttcttgtagt 25991254  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 32093389 - 32093454
Alignment:
Q  17 tactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||| ||||||| |||||||||||||| ||| ||| |||||||| | ||||| |||||||||||    
T  32093389 tactgagggattttttgcattattgagggtttaattctgccagtaaaatgcaaaattcttgtagtg 32093454  T

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Target: scaffold0006 (Bit Score: 76; Significance: 9e-35; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 187654 - 187567
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgtcttaa 88  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  187654 cctcagtaatatccattactgacagattttgtgcattattgagggtttatttccgccagtaataaacaaatttcttgtagtgtcttaa 187567  T

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Target: chr8 (Bit Score: 71; Significance: 9e-32; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 45470199 - 45470281
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgt 83  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  45470199 cctcagtaatatccattactgacagattttgtgcattattgagagcttatttccgctagtaataagcaaatttcttgtagtgt 45470281  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 37094511 - 37094431
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagt 81  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||    
T  37094511 cctcagtaatatccattactgacagattttgtgcattattgagggtttatttccgtcagtaataatcaaatttcttgtagt 37094431  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 82
Target Start/End: Original strand, 17506146 - 17506213
Alignment:
Q  15 attactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||||| | ||||| ||||||| |||||| ||||||| |||||||| || |||| |||||||||||    
T  17506146 attactgatgaattttttgcattactgagggattatttctgccagtaaaaaccaaaattcttgtagtg 17506213  T

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Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 17524144 - 17524063
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||| | ||||||||||||    
T  17524144 cctcagtaatatccattactgacagattttgtgcattattgagggtttttttccgccagtaataagctattttcttgtagtg 17524063  T

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Target: scaffold0174 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33975 - 34058
Alignment:
Q  1 cctcagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtgtc 84  Q
    ||||||||||||||||||||||| |||||| |||||||||||||| ||||||||| || |||||||||||||| ||||||||||    
T  33975 cctcagtaatatccattactgacagattttatgcattattgagggtttatttccgtcaataataagcaaattttttgtagtgtc 34058  T

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Target: chr2 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 37441392 - 37441470
Alignment:
Q  4 cagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||||||||||||||||| |||||||| |||||||||||| |||||||||| |||||||||| ||||||||||||||    
T  37441392 cagtaatatccattactgacagattttgtacattattgagggtttatttccgctagtaataagctaatttcttgtagtg 37441470  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 82
Target Start/End: Complemental strand, 21493725 - 21493647
Alignment:
Q  4 cagtaatatccattactgacggattttgtgcattattgagggcttatttccgccagtaataagcaaatttcttgtagtg 82  Q
    |||||||||  | |||||| |||||||  || ||| |||||| |||||||||||||||| || || |||||||||||||    
T  21493725 cagtaatatgtactactgagggatttttggcgttactgagggattatttccgccagtaaaaaccagatttcttgtagtg 21493647  T

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