View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_17 (Length: 710)

Name: NF8911_low_17
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_17
NF8911_low_17
[»] chr3 (5 HSPs)
chr3 (167-697)||(43732269-43732796)
chr3 (21-162)||(43732829-43732970)
chr3 (42-117)||(43732977-43733052)
chr3 (551-592)||(43732059-43732100)
chr3 (19-50)||(43733056-43733087)
[»] chr8 (4 HSPs)
chr8 (167-697)||(5336620-5337149)
chr8 (22-165)||(5336447-5336590)
chr8 (42-113)||(5336362-5336435)
chr8 (19-53)||(5336327-5336361)
[»] chr2 (9 HSPs)
chr2 (167-697)||(18138978-18139477)
chr2 (130-273)||(9071348-9071491)
chr2 (19-149)||(18140651-18140781)
chr2 (19-135)||(9071090-9071206)
chr2 (21-113)||(9070989-9071081)
chr2 (42-113)||(18140857-18140928)
chr2 (82-113)||(18140790-18140821)
chr2 (19-50)||(18140932-18140963)
chr2 (551-597)||(18138762-18138808)


Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 167 - 697
Target Start/End: Complemental strand, 43732796 - 43732269
Alignment:
Q  167 agaggccacacgcatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagcagcatactaccatatcttaccgtgagtttgacactct 266  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||    
T  43732796 agaggccacacacatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagcagcatactaacatgtcttaccgtgagtttgaaattct 43732697  T
Q  267 acttgcacttcattgtttgaaaggtgacatccatttcatttaagcatgttgttattaaagcacaccatttctgtcatagctacggcgaggttttatttta 366  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||| ||||||||||| ||     
T  43732696 acttgcacttcattttttgaaaggtgacatccatttcatttaagcatgttgttattgaagcatatcatttatgtcatagctacgacgaggttttatgttc 43732597  T
Q  367 tggtgtatgtattggnnnnnnnnnctacattagttatggaatatgaaaagtgtgagcctatatgttgacaatattttttaaagtagaaaatttctttata 466  Q
    |||||||||| ||||         ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  43732596 tggtgtatgtgttggttttttt--ctacattagttatggcatatgaaaagtgtgagcctatatgttgacaatattttttaaactaggaaatttctttata 43732499  T
Q  467 ttattcacatattcagatcatatgatattgatgactgtttgtttttgtgatgtattttctaaaactgtactttgtttacaacattctttttgccgctatt 566  Q
    |||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||| | || | ||||||||||||||  ||||||||||||||||    
T  43732498 ttattcacatattcagatcatatgatattgatgactatttgtttctataatgtattttcttataccgcactttgtttacaacgctctttttgccgctatt 43732399  T
Q  567 tagacaagtttgattgaccttgcatgtttttattattttttaaagtaggaaatttctttatattgattcacatatgaaggtcatatgctaatgctctcca 666  Q
    ||||||||||| ||||||||||||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  43732398 tagacaagtttaattgaccttgcatgtttttgttattttgt-aagtaggaaatttctttagattgattcacatatgaaggtcatatgctaatgctctcca 43732300  T
Q  667 ttagtttttgtggtgtttttgtttattgatg 697  Q
    ||||||| |||||||||||||||||||||||    
T  43732299 ttagtttctgtggtgtttttgtttattgatg 43732269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 43732970 - 43732829
Alignment:
Q  21 ttatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtctactttgt 120  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||    
T  43732970 ttatgcaagctttggtaccatcatttactgttgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtttcctttgt 43732871  T
Q  121 gctgccaactactccacttaatacttcatattaatgtttaaa 162  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  43732870 gctgccaactactcaacttaatacttcatattaatgtttaaa 43732829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 43733052 - 43732977
Alignment:
Q  42 catttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtctactt 117  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  43733052 catttaatgatgatttcaagttttcaaatttgaatttcccacccaagtgtggacatgtcatcattaaagtctactt 43732977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 551 - 592
Target Start/End: Complemental strand, 43732100 - 43732059
Alignment:
Q  551 tctttttgccgctatttagacaagtttgattgaccttgcatg 592  Q
    ||||||||||||||||||||||||||| |||||| |||||||    
T  43732100 tctttttgccgctatttagacaagtttaattgacattgcatg 43732059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 43733087 - 43733056
Alignment:
Q  19 tgttatgcaagctttggtaccatcatttaatg 50  Q
    ||||||||||||||||||||||||||||||||    
T  43733087 tgttatgcaagctttggtaccatcatttaatg 43733056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 167 - 697
Target Start/End: Original strand, 5336620 - 5337149
Alignment:
Q  167 agaggccacacgcatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagcagcatactaccatatcttaccgtgagtttgacactct 266  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||||    
T  5336620 agaggccacatgcatataaatcttgccaccctcattcaatccttttgtcttgccagaataagcagcatactaccatgtcttaccgtgagtttgaaactct 5336719  T
Q  267 acttgcacttcattgtttgaaaggtgacatccatttcatttaagcatgttgttattaaagcacaccatttctgtcatagctacggcgaggttttatttta 366  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||     
T  5336720 acttgtacttcattgtttgaaaggtgacatccatttcatttaagcatgttgttattgaagcataccatttctgtcatagctacgacgaggttttatgttc 5336819  T
Q  367 tggtgtatgtattggnnnnnnnnnctacattagttatggaatatgaaaagtgtgagcctatatgttgacaatattttttaaagtagaaaatttctttata 466  Q
    |||||||||| ||||         ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5336820 tggtgtatgtgttggtttttttt-ctacatttgttatggcatatgaaaagtgtgagcctatatgttgacaatattttttaaagtaggaaatttctttata 5336918  T
Q  467 ttattcacatattcagatcatatgatattgatgactgtttgtttttgtgatgtattttctaaaactgtactttgtttacaacattctttttgccgctatt 566  Q
    ||||||||||||| |||||||||||||||||||| ||||||||| | ||||||||||||| | ||   ||||||||||||||| ||||||||||||||||    
T  5336919 ttattcacatatttagatcatatgatattgatgattgtttgtttctttgatgtattttcttatacctcactttgtttacaacactctttttgccgctatt 5337018  T
Q  567 tagacaagtttgattgaccttgcatgtttttattattttttaaagtaggaaatttctttatattgattcacatatgaaggtcatatgctaatgctctcca 666  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||| ||||||||||||    
T  5337019 tagacaagtttaattgaccttgcatgtttttattattttttaaagtaggaaatttatttagattgattcacatataaaggtcatatgttaatgctctcca 5337118  T
Q  667 ttagtttttgtggtgtttttgtttattgatg 697  Q
    ||||||| ||| || ||||||||||||||||    
T  5337119 ttagtttctgtagtttttttgtttattgatg 5337149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 5336447 - 5336590
Alignment:
Q  22 tatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtctactttgtg 121  Q
    |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  5336447 tatgcaagctttggtatcataatttaatgctgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtctcctttgtg 5336546  T
Q  122 ctgccaactactccacttaatacttcatattaatgtttaaactt 165  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  5336547 ctgccaactactcaacttaatacttcatattaatgtttaaactt 5336590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 42 - 113
Target Start/End: Original strand, 5336362 - 5336435
Alignment:
Q  42 catttaatgctgatttcaagtttt--caaatttgaattttcctcccaagtgtggacatgtcatcattaaagtct 113  Q
    ||||||||||| ||||||||||||  ||||||||||||| ||||||| |||||| |||| ||||||||||||||    
T  5336362 catttaatgctaatttcaagttttttcaaatttgaatttccctcccaggtgtgggcatgccatcattaaagtct 5336435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 19 - 53
Target Start/End: Original strand, 5336327 - 5336361
Alignment:
Q  19 tgttatgcaagctttggtaccatcatttaatgctg 53  Q
    |||||||||||||||| ||||||||||||||||||    
T  5336327 tgttatgcaagctttgataccatcatttaatgctg 5336361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 167 - 697
Target Start/End: Complemental strand, 18139477 - 18138978
Alignment:
Q  167 agaggccacacgcatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagcagcatactaccatatcttaccgtgagtttgacactct 266  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  18139477 agaggccacacacatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagcagcatactaccatttcttaccgtgagtttgaaactct 18139378  T
Q  267 acttgcacttcattgtttgaaaggtgacatccatttcatttaagcatgttgttattaaagcacaccatttctgtcatagctacggcgaggttttatttta 366  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||  ||||||||||| ||     
T  18139377 acttgcacttcattgtttgaaaggtgacatccatttcatttaagcatgttgttattgaagcataccatttatgtcatagctacaacgaggttttatgttc 18139278  T
Q  367 tggtgtatgtattggnnnnnnnnnctacattagttatggaatatgaaaagtgtgagcctatatgttgacaatattttttaaagtagaaaatttctttata 466  Q
    |||||||||| ||||         ||||||||||||||| ||||||||| |||||||||||||                      |||||||||||||||    
T  18139277 tggtgtatgtgttgg-ttttttttctacattagttatggcatatgaaaaatgtgagcctatat----------------------gaaaatttctttata 18139201  T
Q  467 ttattcacatattcagatcatatgatattgatgactgtttgtttttgtgatgtattttctaaaactgtactttgtttacaacattctttttgccgctatt 566  Q
    ||||||        |||||||||||||||||||||||||||||| |||| |||||||||| | |||| ||||||||||||||  ||||||||||||||||    
T  18139200 ttattc--------agatcatatgatattgatgactgtttgtttatgtggtgtattttcttatactgcactttgtttacaacgctctttttgccgctatt 18139109  T
Q  567 tagacaagtttgattgaccttgcatgtttttattattttttaaagtaggaaatttctttatattgattcacatatgaaggtcatatgctaatgctctcca 666  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |     
T  18139108 tagacaagttaaattgaccttgcatgtttttattattttttaaagtaggaagtttctttagattgattcacatatgaaggtcatatgctaatgctcttcg 18139009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 130 - 273
Target Start/End: Original strand, 9071348 - 9071491
Alignment:
Q  130 tactccacttaatacttcatattaatgtttaaacttaagaggccacacgcatagaaatcttgccaccctccttcaatccttttgtcttgccaaaatcagc 229  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9071348 tactccacttaatacatcatattaatgtttaaacttaagaggccacacgcatagaaatcttgctaccctccttcaatccttttgtcttgccaaaatcagc 9071447  T
Q  230 agcatactaccatatcttaccgtgagtttgacactctacttgca 273  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||    
T  9071448 agcatactaccatgtcttaccgtgagtttgaaactctacttgca 9071491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 18140781 - 18140651
Alignment:
Q  19 tgttatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtctacttt 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  18140781 tgttatgcaagctttggtaccatcatttaatgttgatttcaagttttcaaatttgaatttccctcccaagtgtggacatgtcatcattaaagtctccttt 18140682  T
Q  119 gtgctgccaactactccacttaatacttcat 149  Q
    ||| |||||||||||| ||||||||||||||    
T  18140681 gtgttgccaactactcaacttaatacttcat 18140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 19 - 135
Target Start/End: Original strand, 9071090 - 9071206
Alignment:
Q  19 tgttatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtctacttt 118  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  9071090 tgttatgcaagctttggtatcatcatttaatgctgatttcaagttttcaaatttgaatttcccttccaagtgtggacatgtcatcattaaagtctacttt 9071189  T
Q  119 gtgctgccaactactcc 135  Q
    |||||||||||||||||    
T  9071190 gtgctgccaactactcc 9071206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 9070989 - 9071081
Alignment:
Q  21 ttatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtct 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||    
T  9070989 ttatgcaagctttggtaccatcatttaatgctgatttcaagttttcaaatttgaatttccctctcaagtgtggatatgtcatcattaaagtct 9071081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 42 - 113
Target Start/End: Complemental strand, 18140928 - 18140857
Alignment:
Q  42 catttaatgctgatttcaagttttcaaatttgaattttcctcccaagtgtggacatgtcatcattaaagtct 113  Q
    ||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  18140928 cattttatgctgatttcaaattttcaaatttgaattttcctctcaagtgtggacatgtcatcattaaagtct 18140857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 113
Target Start/End: Complemental strand, 18140821 - 18140790
Alignment:
Q  82 tcccaagtgtggacatgtcatcattaaagtct 113  Q
    ||||||||||||||||||||||||||||||||    
T  18140821 tcccaagtgtggacatgtcatcattaaagtct 18140790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 18140963 - 18140932
Alignment:
Q  19 tgttatgcaagctttggtaccatcatttaatg 50  Q
    ||||||||||||||||||||||||||||||||    
T  18140963 tgttatgcaagctttggtaccatcatttaatg 18140932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 551 - 597
Target Start/End: Complemental strand, 18138808 - 18138762
Alignment:
Q  551 tctttttgccgctatttagacaagtttgattgaccttgcatgttttt 597  Q
    |||||||||||||||||||| |||||| |||||| |||||| |||||    
T  18138808 tctttttgccgctatttagagaagtttaattgacattgcattttttt 18138762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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