View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_18 (Length: 687)

Name: NF8911_low_18
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_18
NF8911_low_18
[»] chr4 (7 HSPs)
chr4 (13-687)||(7587522-7588196)
chr4 (375-616)||(46784731-46784971)
chr4 (301-526)||(33803719-33803944)
chr4 (386-580)||(48847861-48848055)
chr4 (96-471)||(3881511-3881889)
chr4 (102-609)||(54477389-54477897)
chr4 (442-474)||(46913735-46913767)
[»] chr8 (6 HSPs)
chr8 (15-687)||(26708601-26709277)
chr8 (324-678)||(26973044-26973399)
chr8 (357-574)||(14759618-14759835)
chr8 (303-538)||(38348199-38348434)
chr8 (228-519)||(26586975-26587266)
chr8 (237-484)||(13029987-13030234)
[»] chr3 (11 HSPs)
chr3 (13-687)||(55024692-55025369)
chr3 (63-687)||(3659558-3660182)
chr3 (59-686)||(49149712-49150336)
chr3 (301-609)||(17718539-17718847)
chr3 (301-609)||(19019768-19020076)
chr3 (240-538)||(53608420-53608718)
chr3 (372-499)||(38647434-38647561)
chr3 (485-595)||(24731045-24731155)
chr3 (201-473)||(11889820-11890092)
chr3 (360-483)||(15473687-15473808)
chr3 (363-678)||(23424090-23424405)
[»] chr2 (12 HSPs)
chr2 (63-687)||(39012110-39012734)
chr2 (207-420)||(1487402-1487615)
chr2 (348-616)||(26790972-26791240)
chr2 (201-526)||(177240-177565)
chr2 (113-609)||(40327836-40328332)
chr2 (320-473)||(42403417-42403570)
chr2 (361-490)||(572969-573098)
chr2 (113-609)||(35135212-35135708)
chr2 (113-278)||(3779041-3779206)
chr2 (363-562)||(35063203-35063402)
chr2 (399-609)||(19265074-19265284)
chr2 (385-472)||(14653942-14654029)
[»] chr7 (4 HSPs)
chr7 (18-687)||(16769863-16770531)
chr7 (72-608)||(23207821-23208357)
chr7 (117-473)||(27781630-27781986)
chr7 (386-613)||(1579428-1579655)
[»] chr1 (7 HSPs)
chr1 (59-687)||(23464920-23465560)
chr1 (307-604)||(1524633-1524930)
chr1 (96-604)||(50451561-50452069)
chr1 (301-473)||(31325133-31325305)
chr1 (239-609)||(50236684-50237054)
chr1 (345-494)||(43298134-43298283)
chr1 (398-462)||(10103958-10104022)
[»] chr6 (11 HSPs)
chr6 (311-687)||(13027606-13027980)
chr6 (200-561)||(35233195-35233556)
chr6 (379-687)||(13599167-13599475)
chr6 (366-603)||(11297048-11297285)
chr6 (311-552)||(12646172-12646413)
chr6 (30-232)||(13599621-13599823)
chr6 (204-494)||(32725548-32725838)
chr6 (72-274)||(24990618-24990820)
chr6 (240-538)||(27853075-27853373)
chr6 (363-609)||(24894082-24894328)
chr6 (72-274)||(24893791-24893993)
[»] scaffold0214 (1 HSPs)
scaffold0214 (363-616)||(8618-8871)
[»] chr5 (4 HSPs)
chr5 (301-526)||(23944759-23944984)
chr5 (269-473)||(23620770-23620974)
chr5 (373-483)||(6641269-6641379)
chr5 (363-517)||(31814395-31814549)


Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 13 - 687
Target Start/End: Original strand, 7587522 - 7588196
Alignment:
13 ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7587522 ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat 7587621  T
113 agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc 212  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
7587622 agagagcttttccatacacaagatgaagagataaggagagagagggtcaccctggcgaagaccatgagttggcttaaactgcggaagcttgttaccattc 7587721  T
213 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| ||||    
7587722 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaagccaaagtcatttagacaatttttaagaaactccc 7587821  T
313 aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
7587822 aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcctgcaaaac 7587921  T
413 aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg 512  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
7587922 aattgaattgtcagttgttcccctacgaggtagaaaactactttggtaggggccaataataacattaagaatcggtctgagacggtgaaccaagactttg 7588021  T
513 gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcag 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
7588022 gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcagttttgggaatgagggcaatgagggtgtcag 7588121  T
613 atattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
7588122 atattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 7588196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 375 - 616
Target Start/End: Original strand, 46784731 - 46784971
Alignment:
375 ttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataa 474  Q
    |||||||| | |||||||||||||||||| ||||||||||| || |||||||  || ||| ||||  ||||||||||||||||||||||||||||||||     
46784731 ttggatctccacatgaagtgaacaatttcctgcaaaacaatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaataatat 46784830  T
475 cattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtggg 574  Q
     ||| |||||||| |||||  |||  || | |||||||||||||| ||||||    |||||||||||||| || |||| |||||||||  | ||| | ||    
46784831 tattgagaatcgg-ctgaggcggttgacaaggactttggtgatgattttgtaggttatgttgcaaaggctgataggtctaaagtctttgtaggttttagg 46784929  T
575 agggtcaattttgggaatgagggcaatgagggtgtcagatat 616  Q
     || |||||||| || |||||||||||||| ||||| |||||    
46784930 tggatcaattttagggatgagggcaatgagagtgtcggatat 46784971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 301 - 526
Target Start/End: Complemental strand, 33803944 - 33803719
Alignment:
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    |||||||||||||||| | ||||||||| || || ||||| || || ||||| |||||||| ||||| ||||| || |||||||||||| | |||| |||    
33803944 taagaaaatcccaattaacattatcaaaggctttctcaaggtcaagcttaaacgccacaaatccttttttcttcttagatcttctcatgtaatgaataat 33803845  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    ||| ||||||||||| ||||| ||||  |||||||||||| | ||||| || |||||||| || || ||||||  ||||||||| ||||||||| | ||     
33803844 ttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcctataatattattaagaataggtctgagacgctgg 33803745  T
501 accaagactttggtgatgagtttgta 526  Q
    ||||| ||||| || |||| ||||||    
33803744 accaaaactttagtaatgattttgta 33803719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 580
Target Start/End: Complemental strand, 48848055 - 48847861
Alignment:
386 catgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatc 485  Q
    ||||||||||   ||||| |||||||||||||  |||||||| || |||||||||   |||||||| ||||| ||| |||||||||||    |||||||     
48848055 catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaataatattgctaagaata 48847956  T
486 ggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtc 580  Q
    ||| | ||  | ||||| | |||||||||||||| |||||| |  |||||||| ||||||||||| | |||||||||  | || |||||||||||    
48847955 ggtattaggcgatgaacaaggactttggtgatgattttgtagaagatgttgcataggctaatggggcaaaagtctttgtaagtggtgggagggtc 48847861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 471
Target Start/End: Complemental strand, 3881889 - 3881511
Alignment:
96 gcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtg 195  Q
    |||||||| || || ||||| |||||||||||||| |  |||||||| |||  ||| || || ||||| || || || ||||| || || || || || |    
3881889 gcattgttaatagcaatagatagcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcg 3881790  T
196 gaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagaca 295  Q
    | |  ||||||||||||||||| |  ||||| || || || |||||||| ||||| || |||||| |||| ||| | || ||  |||| ||||| || ||    
3881789 gcattttgttaccattccataagatagagaaggtggaggaggtgacacaatgcatgataagtttgatggtgatggccggaaaatcaaactcatgaaggca 3881690  T
296 atttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttg---gatcttct-catgaa 391  Q
    |    ||||||||||||| || | |||||||||||| ||||| | ||| || || || || ||| | ||||||||||| ||    || ||||| ||| ||    
3881689 agaattaagaaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaagcaacataacctttcttcttcttcttaga-cttcttcataaa 3881591  T
392 gtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa 471  Q
     |||| |||||| ||||||||||| || || ||||  |||||||||||| | |||||||| |||||||| || |||||||    
3881590 atgaataatttcctgcaaaacaatagagttatcagaagttcccctaccaggcagaaaactgctttggtaagggccaataa 3881511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 609
Target Start/End: Original strand, 54477389 - 54477897
Alignment:
102 ttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagct 201  Q
    ||||| || |||||||| |||||||| || |  |||||||||||||  || | ||| ||||| ||||| |||||||| || ||||| ||   ||||||||    
54477389 ttgatagcaatagagagattttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagct 54477488  T
202 tgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgt 301  Q
    |||| |||||||| |  |   || |  | ||||| |  ||||| ||||| ||||| ||| |||| ||||| |||||  | || ||||| || || ||  |    
54477489 tgtttccattccaaaggataaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtcagggaactcgaaatcatgaaggcagttgct 54477588  T
302 aagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatt 401  Q
    ||| || |||||||| | ||| ||||| || ||||  | ||| || ||||| || ||| | || |||||  |||||||||| || ||||| ||||  |||    
54477589 aaggaattcccaattgacattgtcaaaagcttttttcaaatcaagcttaaaagctacataacccttcttacttttggatctccttatgaaatgaattatt 54477688  T
402 tcgtgc-aaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    || ||| |||||||| || || || |  || ||||| ||| | |||||||| |||||| |||| ||||||||   | ||||||| || || ||  |||||    
54477689 tcctgcaaaaacaatagagttatctgaagtgccccttccaggcagaaaactgctttggcaggggccaataatgttagtaagaataggccttagtcggtga 54477788  T
501 accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa 600  Q
    ||||| || || ||||| | |||||| |  || || |||||||| |||||||  ||||||||| | || ||||| ||||||||| | |||||||| ||||    
54477789 accaaaacctttgtgataattttgtagatgatattacaaaggctgatgggtctgaagtctttataagtagtgggtgggtcaattataggaatgagtgcaa 54477888  T
601 tgagggtgt 609  Q
    |||| ||||    
54477889 tgagagtgt 54477897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 474
Target Start/End: Complemental strand, 46913767 - 46913735
Alignment:
442 gtagaaaactactttggtagggaccaataataa 474  Q
    |||||||||||||||||||||| ||||||||||    
46913767 gtagaaaactactttggtaggggccaataataa 46913735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Original strand, 26708601 - 26709277
Alignment:
15 acatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatag 114  Q
    ||||||||||| ||||| ||||| || ||||| | |||  ||| |||||||| ||||| |||||||||||| ||||||| ||||||||| ||||||||||    
26708601 acatcatccgcaaaaagaaggtgtgaaagatatgacccgatattattgatacagattgattcccaccttctctgactgatagcattgttaatggcgatag 26708700  T
115 agagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattcca 214  Q
    ||||||||||||||||||  ||||| || |||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| ||||||||    
26708701 agagcttttccatacacagtatgaaaaggtaaggagagagagggtcaccctggcgaagaccatgagatggcttaaattgaggaagcttgtttccattcca 26708800  T
215 taaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaa 314  Q
    || || |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| |||| ||||| ||||||||| ||||||| ||||||    
26708801 tagaattgagaaagtagatgaagtgacacaatgcataatgagcttgctggtaatttctgggaagccaaaatcatgcagacaatttctaagaaactcccaa 26708900  T
315 tttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaa 414  Q
    |  | ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |  |||||||    
26708901 tggacattatcaaaggcattttcaaggtccagtttaaaggccacaaaccctttcttctttttagattttctcataaagtgaacaatttcctataaaacaa 26709000  T
415 ttgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggt 514  Q
    |||||| |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||| || | |||||||||| |||||||||||||||||||    
26709001 ttgaatagtcagttgttcccctaccagttagaaaactactttggtaggggccaataataacattgagtaacggtctgagacggtgaaccaagactttggt 26709100  T
515 gatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgt----tgtgggagggtcaattttgggaatgagggcaatgagggtgtc 610  Q
    |||||| ||||||||||||||||||| | ||||||||| |||||||||||||||     | ||| |||||  |||||||||||||||||||||| |||||    
26709101 gatgagcttgtacacaatgttgcaaatgataatgggtctaaagtctttaaatgtgttgggggggggggtcggttttgggaatgagggcaatgagtgtgtc 26709200  T
611 agatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
    ||||||||   |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
26709201 agatatttgtcggtcaaaggtaccagtttggaaagcagtttgaaccatatgaaaaatgtcatctccaataatgtgcc 26709277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 324 - 678
Target Start/End: Complemental strand, 26973399 - 26973044
Alignment:
324 tcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgt 423  Q
    ||||| || ||||| || || ||||| || || |||||||| ||||||||||||||||| |||||||| ||||  ||||| ||||||||||| || || |    
26973399 tcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttat 26973300  T
424 cagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagttt 523  Q
    |||  || ||||| ||| | |||||||| ||||||||||| |||||||||  | ||||||| || || ||  |||||||||| || || ||||||| |||    
26973299 cagaggtgcccctcccaggcagaaaactgctttggtaggggccaataatattagtaagaatgggccttagccggtgaaccaacaccttagtgatgatttt 26973200  T
524 gtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt-gggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagg 622  Q
    ||| | ||| || |||||||||||||| |  ||||||||| |||| || ||| ||||||||||| || ||||| || ||||| ||||  || || |  ||    
26973199 gtaaataatattacaaaggctaatgggcctgaagtctttatatgtagtggggggggtcaatttttggtatgagtgcgatgagagtgtttgaaatctctgg 26973100  T
623 gtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaa 678  Q
    |||||||  |||  ||||||||||  | || ||||| ||| | |||||||||||||    
26973099 gtcaaagtaacccttttggaaagctgtgtggaccatttggtagatatcatctccaa 26973044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 14759835 - 14759618
Alignment:
357 acaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactacttt 456  Q
    |||||||| ||||||||||||||||| |||||||| ||||  ||||| ||||||||||| || || ||||  || ||||| ||| | |||||||| ||||    
14759835 acaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgcttt 14759736  T
457 ggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaa 556  Q
    ||||||| |||||||||  | ||||||| || || ||  |||||||||  || || ||||||| |||||| | ||| || ||||||||||||||||  ||    
14759735 ggtaggggccaataatattagtaagaatgggccttagccggtgaaccagcaccttagtgatgattttgtaaataatattacaaaggctaatgggtctgaa 14759636  T
557 gtctttaaatgttgtggg 574  Q
    ||||||| |||| |||||    
14759635 gtctttatatgtagtggg 14759618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 303 - 538
Target Start/End: Complemental strand, 38348434 - 38348199
Alignment:
303 agaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaattt 402  Q
    ||||| ||||| || | ||||||||| || ||||| ||||||| ||| || || ||| | ||||| |||||||| ||| ||||||||   || |||||||    
38348434 agaaattcccagttgacattatcaaaagctttttctagatccattttgaaagcaacacaaccttttttcttttttgattttctcatgtgatggacaattt 38348335  T
403 cgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaac 502  Q
    | ||||||| ||| ||||| ||||  |||||||||||| | || || || ||||| ||||| |||||||||  ||||||||||||||| |    ||||||    
38348334 cctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaataatattattaagaatcggtctcaatctgtgaac 38348235  T
503 caagactttggtgatgagtttgtacacaatgttgca 538  Q
    ||| |||| |||||| | |||||| |||||||||||    
38348234 caaaacttaggtgataattttgtaaacaatgttgca 38348199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 519
Target Start/End: Complemental strand, 26587266 - 26586975
Alignment:
228 gtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaa 327  Q
    |||||||||||||| || ||||| ||||||||| |||    ||| || ||  | || ||||| |||||| |  ||||||| ||||| || | ||| ||||    
26587266 gtagatgaagtgacgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatgaagacaagtattaagaaactcccagttaacattgtcaa 26587167  T
328 atgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagt 427  Q
    |||| || |||||||| || || || || ||| | ||||||||| | || ||| | ||||| |||||| ||||||| ||||||||||  || ||||||      
26587166 atgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaagagttgtcata 26587067  T
428 tgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatga 519  Q
     || ||||||||  | ||||||||  ||||||||||||||||||||   ||||| |||||||||||  | || || | ||||||||||||||    
26587066 agtgcccctacctggcagaaaactgatttggtagggaccaataatattgttaaggatcggtctgaggcgatggacaaggactttggtgatga 26586975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 484
Target Start/End: Complemental strand, 13030234 - 13029987
Alignment:
237 gtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgcctttt 336  Q
    |||||||| ||||| |||  |||| | || || ||||||||| |||| || || || ||| ||  |||||||  |||||| | ||||||||| |  ||||    
13030234 gtgacacaatgcatgatggatttggtagtgatttctgggaagccaaaatcctggaggcaagtttgaagaaaaaaccaattgacattatcaaaagtttttt 13030135  T
337 caagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccct 436  Q
    ||||||| || ||||| | | ||||||| ||||| || ||  |||||||||| || ||||  ||||| ||||||| |||   ||||| ||  || || ||    
13030134 caagatcaagcttaaaagtcgcaaaccccttctttttcttatatcttctcataaaatgaatgatttcctgcaaaataatgacattgttagaagtacctct 13030035  T
437 accatgtagaaaactactttggtagggaccaataataacattaagaat 484  Q
    |||| | || ||||||||||||||||| ||||||||| ||| ||||||    
13030034 accaggcaggaaactactttggtaggggccaataatagcatcaagaat 13029987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 687
Target Start/End: Original strand, 55024692 - 55025369
Alignment:
13 ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat 112  Q
    |||| ||||| |||||||| || ||||| | |||||| ||| | |  |||||||||||||| |||||||| || ||| |||| ||||| |||||||| ||    
55024692 ggacgtcatctgcgaaaagaagatgagataaatacggaccattgttgttgatacggattggatcccacctcctctgagtgactgcattattgatggcaat 55024791  T
113 agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc 212  Q
     ||||||||||||||||| ||||||||||| || |  ||||| || ||||| |||||||||| |||||| | |||||  || ||||||||||| ||||||    
55024792 tgagagcttttccatacataagatgaagaggtatggtgagagcggatcaccttggcgaagactatgagtagacttaagttgaggaagcttgttgccattc 55024891  T
213 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc 312  Q
    || | ||| ||||| || ||||||| |||||| ||||||||||||||| | |||||||| |||||  |||| ||||||||||| |||  |||||| | ||    
55024892 caaagaacagagaaggtggatgaagagacacaatgcataatgagtttgattgtaatgtcagggaaaccaaaatcatgtagacagttttgaagaaatttcc 55024991  T
313 aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac 412  Q
    | || | |||||| || || ||||| |||||||  ||||||||||||| ||||||||||||||| ||||| |||||| | ||||| | ||| ||||||||    
55024992 atttgacattatcgaaagctttttctagatccaacttaaaggccacaagccctttcttcttttttgatctcctcatgtaatgaactacttcctgcaaaac 55025091  T
413 aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg 512  Q
    ||||||||||||||| || ||||||||| |||||||||||||||| ||||| ||||||||| |||| ||||| ||   |||  |||||||||||||||||    
55025092 aattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaataatagcatttagaatgggctggaggcggtgaaccaagactttg 55025191  T
513 gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt---gggagggtcaattttgggaatgagggcaatgagggtgt 609  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||| || ||||| || ||   ||| |||||  |||||||||||||||||||||||||||    
55025192 gtgatgagtttgtacacaatgttgcacaggctgatgggtctaaattccttaaaagtagtggggggggggtcggttttgggaatgagggcaatgagggtgt 55025291  T
610 cagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
    |||||||| |||||||||| | ||| ||||||||||||  ||| ||||||||||| ||||||||||||||||||||||    
55025292 cagatattctagggtcaaaagcacctgtttggaaagcagattgcaccatatggaagatatcatctccaataatgtgcc 55025369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 63 - 687
Target Start/End: Original strand, 3659558 - 3660182
Alignment:
63 atacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcac 162  Q
    ||||||||||| ||||| || |||||  |||| ||||  || ||||| || ||||| ||||||||||||| |||||| || || | |||||| || ||||    
3659558 atacggattggctcccatctcctttggttgactgcatcatttatggcaatggagagtttttccatacacaggatgaacaggtagggagagagcggatcac 3659657  T
163 cctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgtt 262  Q
    | || |||||||||||||| |||||||| |  |||||||| || |||||||| ||||| ||||| || || || | |||||| ||||| ||||| ||| |    
3659658 cttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattccacaaaacagagaaggtggaggatgagacacaatgcatgatgagcttgat 3659757  T
263 ggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaac 362  Q
    ||||||||| |||||  | || ||||| ||||| ||    ||||| | |||||| | ||||||||| || ||||||||||||||||| || |||||| ||    
3659758 ggtaatgtcagggaaaccgaaatcatgcagacagttatggagaaacttccaattaacattatcaaaggctttttcaagatccagtttgaaagccacatac 3659857  T
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    |||||||||||||||| | | ||||||||||| || ||||| ||||||||||| ||||||||||| || ||||||||| |||||||||||||||| ||||    
3659858 cctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgatagg 3659957  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    | ||||| |||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||  |||| ||||| ||||||||||||| |||||||||    
3659958 ggccaatgataacattaagaattggtctgaggcggtgaaccaagactttagtgatgagtttgtaagcaatattgcagaggctaatgggtctaaagtcttt 3660057  T
563 aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg 662  Q
    ||| ||  |||| |||||  | ||||||||||||| ||||||||| ||||| || || || ||||||||||||||||||||||||  ||| ||||||||     
3660058 aaaagtgctgggggggtcggtcttgggaatgagggaaatgagggtatcagagatgtttggatcaaaggtaccagtttggaaagcagattggaccatatga 3660157  T
663 aaaatatcatctccaataatgtgcc 687  Q
    ||||| |||||||||||||||||||    
3660158 aaaatgtcatctccaataatgtgcc 3660182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 59 - 686
Target Start/End: Original strand, 49149712 - 49150336
Alignment:
59 attgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagaggg 158  Q
    |||||| | ||| ||||||||| | |||||| ||||| ||||||||||||| |  ||||  ||||||||||| ||||||||||||||||| ||           
49149712 attgattctgataggttcccacttcctttgattgacatcattgttgatggctactgagaatttttccatacaaaagatgaagagataagagga------- 49149804  T
159 tcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtt 258  Q
    ||||| || |||||||||||||| ||||| || || || |  ||||||| |||||||||||| |||||||| || ||||  ||||| |||||||| ||||    
49149805 tcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttacaattccataaaacagagaaagtggaagaagaaacacattgcataataagtt 49149904  T
259 tgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccac 358  Q
    || |||||||||||| |||  |||| ||||| ||||||||   |||||| ||||| || | ||||||||| || |||||||| || || ||||| ||| |    
49149905 tgatggtaatgtctgagaatccaaaatcatgcagacaattatgaagaaagtcccagttgacattatcaaaagctttttcaaggtctagcttaaaagccgc 49150004  T
359 aaaccctttcttctttt----tggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactact 454  Q
    | |   ||| || ||||    |  ||||||||||||| ||||||||||| |||||||||||||| |||||| | || ||||||||| | |||||||| ||    
49150005 atattttttatttttttattttttatcttctcatgaaatgaacaatttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgct 49150104  T
455 ttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcga 554  Q
     |  |||||||| || |||| |||||| | ||| |||||| |||||||||||||||||||||| || ||||| ||||  ||||||||| | ||||||| |    
49150105 ctaatagggaccgattataatattaaggagcggcctgagacggtgaaccaagactttggtgataagcttgtaaacaacattgcaaaggttgatgggtcta 49150204  T
555 aagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaa 654  Q
    ||||||||  | ||  ||||||| ||  |||| |||||||| |||| |||||||||||| |||  ||| |||||||  || ||||| |||||    || |    
49150205 aagtctttgtaggtattgggaggttcggttttaggaatgagagcaacgagggtgtcagaaattccaggatcaaaggcgcctgtttgaaaagccaaatgca 49150304  T
655 ccatatggaaaatatcatctccaataatgtgc 686  Q
     ||||| ||||||||||||| |||||||||||    
49150305 acatattgaaaatatcatcttcaataatgtgc 49150336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 609
Target Start/End: Original strand, 17718539 - 17718847
Alignment:
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    |||||||||||||||| | ||||||||| || || ||||| || || || || |||||| | ||||| ||||| || |||||||||||| | ||||  ||    
17718539 taagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgat 17718638  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    ||| ||||||||||| || || ||||  |||||||||||| | ||||| || |||||||| || |||||||||  |||||| || ||||||||  | |||    
17718639 ttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctga 17718738  T
501 accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa 600  Q
    ||||||||||| || |||| |||||| |||||||| || |  ||||| || | |||||||||  |||| || ||||| || | ||| ||||| || ||||    
17718739 accaagactttagtaatgattttgtagacaatgttacacaaactaattggcctaaagtctttgtatgtggtcggaggatccactttaggaataagtgcaa 17718838  T
601 tgagggtgt 609  Q
    |||| ||||    
17718839 tgagcgtgt 17718847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 609
Target Start/End: Original strand, 19019768 - 19020076
Alignment:
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    |||||||||||||||| | ||||||||| || || ||||| || || || || |||||| | ||||| ||||| || |||||||||||| | ||||  ||    
19019768 taagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgat 19019867  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    ||| ||||||||||| || || ||||  |||||||||||| | ||||| || |||||||| || |||||||||  |||||| || ||||||||  | |||    
19019868 ttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctga 19019967  T
501 accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa 600  Q
    ||||||||||| || |||| |||||| |||||||| || |  ||||| || | |||||||||  |||| || ||||| || | ||| ||||| || ||||    
19019968 accaagactttagtaatgattttgtagacaatgttacacaaactaattggcctaaagtctttgtatgtggtcggaggatccactttaggaataagtgcaa 19020067  T
601 tgagggtgt 609  Q
    |||| ||||    
19020068 tgagcgtgt 19020076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 538
Target Start/End: Original strand, 53608420 - 53608718
Alignment:
240 acacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaa 339  Q
    ||||| ||||| ||||| ||| |||| |||||||||||  |||| || ||||| |||    |||||||||||||||| | ||||||||| || || ||||    
53608420 acacaatgcatgatgagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaa 53608519  T
340 gatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctacc 439  Q
    |||| || || || |||||| | ||||| ||||| || |||||| ||||  | |||| |||||| ||||||||||| || || ||||  |||||||||||    
53608520 gatcgagcttgaaagccacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctacc 53608619  T
440 atgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca 538  Q
    | | ||||| || |||||| | || |||||||||  |||||| || || || ||| | |||||||| ||||| || || | ||| || |||||||||||    
53608620 aggcagaaagctgctttggcaagggccaataatattattaaggataggcctaagacgctgaaccaaaactttagtaataattttatagacaatgttgca 53608718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 372 - 499
Target Start/End: Original strand, 38647434 - 38647561
Alignment:
372 tttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa 471  Q
    ||||||||| |||||||||| || |||||||| ||||||||||||||||| |||| |||||| |||||| | |||||| | ||||| ||| | |||||||    
38647434 tttttggattttctcatgaaatgtacaatttcctgcaaaacaattgaattatcagatgttcctctaccaggcagaaaaatgctttgatagaggccaataa 38647533  T
472 taacattaagaatcggtctgagatggtg 499  Q
    ||  ||| ||||| ||||||||| ||||    
38647534 tattattgagaataggtctgagacggtg 38647561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 485 - 595
Target Start/End: Complemental strand, 24731155 - 24731045
Alignment:
485 cggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaatt 584  Q
    |||||||||| |||||||||||||||||||||| || || |||||||| || || |||||||| | || |||||||||  | || | ||||||||| |||    
24731155 cggtctgagacggtgaaccaagactttggtgataagcttatacacaatattacacaggctaatcgatctaaagtctttgtaggtggagggagggtcgatt 24731056  T
585 ttgggaatgag 595  Q
    |||||||||||    
24731055 ttgggaatgag 24731045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 201 - 473
Target Start/End: Original strand, 11889820 - 11890092
Alignment:
201 ttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttg 300  Q
    ||||| ||||||||||  |  |||||||| ||||| |||||||||||||| ||||| ||  ||||||| ||||||||  |||||||||| || |||        
11889820 ttgttcccattccataggatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatggaggcaagcac 11889919  T
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    | |  |||||||| || | ||||||||| || || || || || ||||| || || ||| | ||||||||||| || |||||   ||| ||||| |||||    
11889920 ttaagaaatcccagttgacattatcaaaagctttctctaggtcaagtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaat 11890019  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata 473  Q
    ||| ||||||||||| |  |||||||  || ||||||||  | || || || |||||||||||||| ||||||    
11890020 ttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcaggaagctgctttggtagggacctataata 11890092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 15473687 - 15473808
Alignment:
360 aaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggt 459  Q
    |||||||| ||| ||||||||||| |||| || || |||||||| |||||||||||||| || ||||  || ||| ||||| | |||||||||||||| |    
15473687 aacccttt-ttccttttggatcttttcataaaatgtacaatttcctgcaaaacaattgagttatcagaagtaccc-taccaggcagaaaactactttgat 15473784  T
460 agggaccaataataacattaagaa 483  Q
    |||| |||||||||  ||||||||    
15473785 aggggccaataatattattaagaa 15473808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 678
Target Start/End: Complemental strand, 23424405 - 23424090
Alignment:
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    ||||||||| | || ||| | ||||||||||||| |||||| |||||||||||||| || ||||  |||||||||| | | ||||| || |||||| | |    
23424405 cctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctactaggcagaaatctgctttggcaag 23424306  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    | ||||||| |  | | || || ||||||||| | || || |  ||||| ||||| |  ||||| |  |||||||| || || ||||||| ||| |||||    
23424305 ggccaataagattactgaggataggtctgagacgatgcacaagaactttagtgataatcttgtagattatgttgcatagacttatgggtctaaaatcttt 23424206  T
563 aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg 662  Q
      | || ||||| |  || ||||| |||||||| |||||||| ||||  || || |  || |||||| |||| |||||||| || || || |||||||||    
23424205 gtaagtggtgggggtttcgatttttggaatgagtgcaatgagagtgtttgaaatctccggatcaaagttacctgtttggaaggctttatggaccatatgg 23424106  T
663 aaaatatcatctccaa 678  Q
    || || ||||||||||    
23424105 aagatgtcatctccaa 23424090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 63 - 687
Target Start/End: Complemental strand, 39012734 - 39012110
Alignment:
63 atacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcac 162  Q
    ||||||||||| ||||| || |||||  |||| ||||  || ||||| || ||||| ||||||||||| | |||||| || || | |||||| || || |    
39012734 atacggattggctcccatctcctttggttgactgcatcatttatggcaatggagagtttttccatacataggatgaacaggtagggagagagcggatcgc 39012635  T
163 cctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgtt 262  Q
    | || |||||||||||||| |||||||| |  |||||||| || |||||||| ||||| ||||| || || || | |||||| ||||| ||||||||| |    
39012634 cttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattccacaaaacagagaaggtggaggatgagacacaatgcatgatgagtttgat 39012535  T
263 ggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaac 362  Q
    ||||||||| |||||  | || ||||| ||||| ||    ||||| | |||||| | ||||||||| || ||||||||||| ||||| || |||||| ||    
39012534 ggtaatgtcagggaaaccgaaatcatgcagacagttatggagaaacttccaattaacattatcaaaggctttttcaagatctagtttgaaagccacatac 39012435  T
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    |||||||||||||||| | | ||||||||||| || ||||| ||||||||||| ||||||||||| || ||||||||| |||||||||||||||| ||||    
39012434 cctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgatagg 39012335  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    | ||||| |||||||||||||| ||||||||  |||||||||||||||| ||||||||||||||  |||| ||||| ||||||||||||| |||||||||    
39012334 ggccaatgataacattaagaattggtctgaggcggtgaaccaagactttagtgatgagtttgtaagcaatattgcagaggctaatgggtctaaagtcttt 39012235  T
563 aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg 662  Q
    ||| ||  |||| |||||  | ||||||||||||| ||||||||| ||||| || || || ||||||||||||||||||||||||  ||| ||||||||     
39012234 aaaagtgctgggggggtcggtcttgggaatgagggaaatgagggtatcagagatgtttggatcaaaggtaccagtttggaaagcagattggaccatatga 39012135  T
663 aaaatatcatctccaataatgtgcc 687  Q
    ||||| |||||||||||||||||||    
39012134 aaaatgtcatctccaataatgtgcc 39012110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 207 - 420
Target Start/End: Original strand, 1487402 - 1487615
Alignment:
207 ccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaa 306  Q
    |||||||||||||  |||||||| |||||||| |||||||||||||| || ||  ||||||| || |||||  |||| ||||| ||||||||   ||| |    
1487402 ccattccataaaatagagaaagtggatgaagtaacacagtgcataataagcttaatggtaatatcagggaaaccaaaatcatgaagacaattatcaagga 1487501  T
307 aatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtg 406  Q
    | || || || | ||||||||| || || || ||||| |||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||| ||    
1487502 attctcatttgacattatcaaaagctttctcgagatcaagtttaaaagccacatagcctttcttctttttggatattctcatgaagtgaacaatttcctg 1487601  T
407 caaaacaattgaat 420  Q
    ||||||||||||||    
1487602 caaaacaattgaat 1487615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 348 - 616
Target Start/End: Complemental strand, 26791240 - 26790972
Alignment:
348 ttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaa 447  Q
    ||||| |||||  ||||||||||||| || ||| | | |||| |||||| || ||| ||||||||||| | ||||||||| || | ||||||| | || |    
26791240 ttaaaagccacgtaccctttcttcttcttagatatgcgcatgtagtgaataacttcctgcaaaacaatggcattgtcagtggtgctcctaccaggcagga 26791141  T
448 aactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaat 547  Q
    ||||||||||||| ||||||||||||  |||||| || ||||||||  | || || | |||||| ||||| | |||||| |  ||||| |||||||||||    
26791140 aactactttggtaaggaccaataatattattaaggataggtctgaggcgatggacaaggactttagtgataattttgtagatgatgttacaaaggctaat 26791041  T
548 gggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatat 616  Q
    ||||| |||||||||| | |||   |||||||||| ||||||||||||||| |||||||| ||||||||    
26791040 gggtctaaagtctttataggttaaaggagggtcaactttgggaatgagggctatgagggtatcagatat 26790972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 201 - 526
Target Start/End: Complemental strand, 177565 - 177240
Alignment:
201 ttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttg 300  Q
    ||||| |||||||| | ||| ||||| || || ||||||||||| ||||| ||||||||| | |||   || |||||  |||| || || |||||   |     
177565 ttgtttccattccaaagaacagagaatgttgaagaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttggagacacgatc 177466  T
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    ||||||| |||||||| | ||| ||||| || || |||||||| ||||| || || ||  | ||||| ||| |||| ||||| | ||| || ||||||||    
177465 taagaaactcccaattcacattgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaat 177366  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    ||| ||||||||||| || |||||||  || |||||||| || || ||||| ||||||||||||||||||||| ||||||||||||| | |||| | ||     
177365 ttcctgcaaaacaatagagttgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaataatatcattaagaatcggccggagacgatgc 177266  T
501 accaagactttggtgatgagtttgta 526  Q
    || | ||||||||| |||| ||||||    
177265 acaatgactttggtaatgattttgta 177240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 609
Target Start/End: Complemental strand, 40328332 - 40327836
Alignment:
113 agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc 212  Q
    |||||| ||||||||||| | |||||| ||||||| ||| |  |||||||| || ||||| |||||||| ||||| ||  | | ||||||||| ||||||    
40328332 agagagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattc 40328233  T
213 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc 312  Q
    ||||||| |||| |  | | ||| || ||||| ||||| ||||||||| ||||||||||||||||| | || || || || ||| |   ||| || ||||    
40328232 cataaaattgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaattccc 40328133  T
313 aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac 412  Q
    | || |  || ||||| || || || | ||| || || || || ||||| || |||||| |||| || |   |||| ||||| |  ||||| ||||||||    
40328132 agttgacgttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaac 40328033  T
413 aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg 512  Q
    ||| || ||||| |  || ||||||||| | | |||||||||||||||||||||||||||   | | ||||| || || ||  | |||||||| || ||     
40328032 aatggagttgtctgaggtacccctaccaggaaaaaaactactttggtagggaccaataatgttagtgagaataggccttagccgatgaaccaataccttt 40327933  T
513 gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt 609  Q
    ||||| | |||||| | |||||||||||||||||||||||  || |||||  | || ||||| || |||||||| |||||||| |||||||| ||||    
40327932 gtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgcaatgagagtgt 40327836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 42403417 - 42403570
Alignment:
320 attatcaaatgccttttcaagatccagtttaaaggccaca-aaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattga 418  Q
    ||||||||| || ||||| || || || || ||||||||| |||||||| ||| ||||||||||| |||| || || | |||||| ||||||||||||||    
42403417 attatcaaacgctttttccaggtcaagcttgaaggccacataacccttt-ttccttttggatcttttcataaaatgtataatttcctgcaaaacaattga 42403515  T
419 attgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata 473  Q
    ||| ||||  || ||||||||| ||||||||||||||||| |||| |||||||||    
42403516 attatcagaagtacccctaccaggtagaaaactactttggcaggggccaataata 42403570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 361 - 490
Target Start/End: Complemental strand, 573098 - 572969
Alignment:
361 accctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggta 460  Q
    |||| ||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| || ||||  ||| |||||||||| |||||||| ||||||||    
573098 accccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaattgagttatcagaagtttccctaccatgcagaaaactgctttggta 572999  T
461 gggaccaataataacattaagaatcggtct 490  Q
     || || |||||   ||||||||| |||||    
572998 agggccgataatgttattaagaataggtct 572969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 113 - 609
Target Start/End: Original strand, 35135212 - 35135708
Alignment:
113 agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc 212  Q
    |||||| ||||||||||| | |||||| ||||||| ||| |  |||||||| || ||||| |||||||| ||||| ||  | |  |||||||| ||||||    
35135212 agagagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattc 35135311  T
213 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc 312  Q
    ||||||| |||| |  | | ||| || ||||| ||||| ||||||||| ||||||||||||||||| | || || || || ||| |   ||| || ||||    
35135312 cataaaattgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaagtccc 35135411  T
313 aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac 412  Q
    | || |  || ||||| || || || | ||| || || || || ||||| || |||||| |||| || |   |||| ||||| |  ||||| ||||||||    
35135412 agttgacgttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaac 35135511  T
413 aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg 512  Q
    ||| || ||||| |  || ||||||||| | | |||||| ||||||||||||| ||||||   | | ||||| || || ||  | |||||||| || ||     
35135512 aatggagttgtctgaggtacccctaccaggcaaaaaactgctttggtagggactaataatgttagtgagaataggccttagccgatgaaccaataccttt 35135611  T
513 gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt 609  Q
    ||||| | |||||| | ||||||||||||||||||||||   || |||||  | || ||||| || |||||||| |||||||| |||||||| ||||    
35135612 gtgataattttgtaaataatgttgcaaaggctaatgggtatgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgcaatgagagtgt 35135708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 3779041 - 3779206
Alignment:
113 agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc 212  Q
    |||||| ||||||||||| | |||||| ||||||| ||| || |||||||| || ||||| |||||||| ||||| ||  | |  |||||||| ||||||    
3779041 agagagtttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattc 3779140  T
213 cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaag 278  Q
    ||||| | |||| |  | | ||| || ||||| ||||| ||||||||| |||||||||||||||||    
3779141 cataacaatgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaag 3779206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 562
Target Start/End: Original strand, 35063203 - 35063402
Alignment:
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    |||||||||||||| |||||||||||| | || | |||||| ||||||||||| | ||| || |  |||||| ||||  | | |||| | ||||||||||    
35063203 cctttcttctttttagatcttctcatgcaatggataatttcttgcaaaacaatggcattatctgaagttcccttacctggcaaaaaaatgctttggtagg 35063302  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    | |||||||||  || ||| |||||||| ||  |||| || || |||||| | || | |||||| ||||| ||||||||||| || |||| ||| |||||    
35063303 gtccaataatagtataaagcatcggtcttagtcggtggactaaaactttgataataactttgtagacaatattgcaaaggctgatcggtctaaaatcttt 35063402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 609
Target Start/End: Complemental strand, 19265284 - 19265074
Alignment:
399 atttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggt 498  Q
    ||||| ||||||||||| || |||||    || ||||||||| | | |||| | ||||||||||||||||||||   | | ||||| || || ||  | |    
19265284 atttcctgcaaaacaatggagttgtcttgggtacccctaccaggcaaaaaattgctttggtagggaccaataatgttagtgagaataggccttagccgat 19265185  T
499 gaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggc 598  Q
    ||||||| || || ||||| | |||||| | |||||||||||||||||||||||  || || ||  | || ||||| || |||||||| |||||||| ||    
19265184 gaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatccttgtaagtagtgggtggttcaatttttggaatgagcgc 19265085  T
599 aatgagggtgt 609  Q
    |||||| ||||    
19265084 aatgagagtgt 19265074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 14653942 - 14654029
Alignment:
385 tcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataat 472  Q
    ||||||| |||| |||||| ||||||||||| || || || |  || ||||||||| | |||||||| ||||| ||||||||||||||    
14653942 tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaaactgctttgatagggaccaataat 14654029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 687
Target Start/End: Original strand, 16769863 - 16770531
Alignment:
18 tcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagaga 117  Q
    |||||||| |||||||| ||||| || |  || || || | |||||| | ||| ||||||||| | | || ||||||| |||||||||||||    ||||    
16769863 tcatccgcaaaaaggagatgagaaaggtgtggtcctgtgttattgattctgataggttcccacttcccttaactgacaacattgttgatggctgctgaga 16769962  T
118 gcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataa 217  Q
    | ||||||||||||||||||||||||||||  || ||||| ||||| || |||||||||||||| || || || || || |  |||||||||||||||||    
16769963 gtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccataa 16770062  T
218 aactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaattt 317  Q
    ||  |||||||| || ||||  |||||||||||||| |||||| ||||||||||||||||  |||| ||||| ||||||||   ||||||||| || ||     
16770063 aatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatctcagttg 16770162  T
318 atattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattg 417  Q
    | ||||||||| || |||||||| || || ||||| |||||| | |||| ||| |||||  ||||||||| ||| |||| |||||| |||||||||||||    
16770163 acattatcaaaagctttttcaaggtcaagcttaaaagccacataacctt-cttttttttttatcttctcaagaaatgaaaaatttcctgcaaaacaattg 16770261  T
418 aattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgat 517  Q
    | |||||||| || ||||||||| | |||||||| || || || ||||||||||||| |||||| |  ||||||||| ||| ||||||||||||||||||    
16770262 agttgtcagtagtgcccctaccaggcagaaaactgctctgataaggaccaataataatattaaggagtggtctgagacggttaaccaagactttggtgat 16770361  T
518 gagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatatt 617  Q
     || ||||| ||||  ||||||||||| ||||||| |||||||||  | ||  ||||| ||||  |||| |||||||| |||| |||||||||||| |||    
16770362 aagcttgtaaacaacattgcaaaggctgatgggtctaaagtctttgtaggtattgggaaggtcggttttaggaatgagagcaacgagggtgtcagaaatt 16770461  T
618 ttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
      ||| ||||||| ||| |||||||||||    || ||||||| ||||||||||||||||||||||||||    
16770462 ccaggatcaaaggcacctgtttggaaagccgaatgcaccatattgaaaatatcatctccaataatgtgcc 16770531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 72 - 608
Target Start/End: Original strand, 23207821 - 23208357
Alignment:
72 ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa 171  Q
    |||||||| |||| |||||| |||||||| || || || ||||| ||||| ||||| || |  ||||||||||||| |||||| |||||||| || | ||    
23207821 ggttcccatcttccttgactcacagcattattaatagcaatagaaagcttctccatgcatagtatgaagagataaggagagagtgggtcaccttgtctaa 23207920  T
172 gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc 271  Q
    ||||||| || ||||| ||  | || |  |||||||| |||||||||| |||||| || || || ||||| || ||||| ||||||||| ||||||| ||    
23207921 gaccatgtgtgggcttgaaagggggcattttgttaccgttccataaaattgagaatgtggaggaggtgacgcaatgcatgatgagtttgatggtaatatc 23208020  T
272 tgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttc 371  Q
    ||| ||  |||| || || || |||    |||| ||||||||  | | |||||| || || || || |  || || || || || ||| | |||||||||    
23208021 tggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctccaagtctagcttgaaagcaacataacctttcttc 23208120  T
372 tttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa 471  Q
     | || ||  | ||||| ||||||| |||||| |||||||||||||| |||||||  |||||||||||  | |||||||| |||||| | || |||||||    
23208121 ctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacctggcagaaaactgctttggcaagggccaataa 23208220  T
472 taacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt 571  Q
     |  | | ||||| ||||||||| | || || |  ||||| ||||| |  |||||    |||||||| || || ||||||| ||| |||||  |||| ||    
23208221 gattactgagaataggtctgagacgatgcacaagaactttagtgataatcttgtaggttatgttgcagagactgatgggtctaaaatctttgtatgtggt 23208320  T
572 gggagggtcaattttgggaatgagggcaatgagggtg 608  Q
    ||| ||||| ||||| |||||||| ||||||||||||    
23208321 gggggggtcgattttaggaatgagtgcaatgagggtg 23208357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 117 - 473
Target Start/End: Original strand, 27781630 - 27781986
Alignment:
117 agcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccata 216  Q
    ||||| ||||| || | ||||||||| ||||  || ||||||||||| || |  || |||||||||||||||||  | || |  ||||| || |||||||    
27781630 agcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttccata 27781729  T
217 aaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatt 316  Q
     ||  |||||||| ||||| |||||||||||||| ||||| ||  ||||||| ||||||||  |||||||||| || |||    | |  |||||||||||    
27781730 gaatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggcaagcacttaagaaatcccaatt 27781829  T
317 tatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaatt 416  Q
     | ||||||||| || || || || || ||||| || || ||| | ||||||||||| || ||||| | ||| ||||| |||||||| | |||||||||     
27781830 gacattatcaaaagctttctctaggtcaagtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcctacaaaacaata 27781929  T
417 gaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata 473  Q
    || |||||||  || ||||||||  | || || || ||||| |||||||| ||||||    
27781930 gagttgtcagccgtgcccctacctggcaggaagctgctttgatagggacctataata 27781986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 613
Target Start/End: Original strand, 1579428 - 1579655
Alignment:
386 catgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatc 485  Q
    ||||||||||   ||||| | |||||||||||| |||||||| |  ||||||| | | |||||||| ||||| |||||||||||||||    |||||||     
1579428 catgaagtgagttatttccttcaaaacaattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaataatattgctaagaata 1579527  T
486 ggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattt 585  Q
    ||||| ||  | ||||| | |||||||||||||| |||||| |  || ||||| ||||||||||| |||||||||||  | || |||||||||||    |    
1579528 ggtctcagtcgatgaacaaggactttggtgatgattttgtagatgatattgcataggctaatggggcgaaagtctttgtaagtggtgggagggtccgcct 1579627  T
586 tgggaatgagggcaatgagggtgtcaga 613  Q
    |||| |||||||| || || ||||||||    
1579628 tgggtatgagggctataagagtgtcaga 1579655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 59 - 687
Target Start/End: Complemental strand, 23465560 - 23464920
Alignment:
59 attgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagaga--gag 156  Q
    |||||| | ||| ||||||||| | |||||| ||||| ||||||||||||| |  ||||| ||||||||||||||||||||||||||||  | ||  |||    
23465560 attgattctgataggttcccacttcctttgattgacaacattgttgatggctactgagagtttttccatacacaagatgaagagataaggtgtgaaagag 23465461  T
157 ggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgag 256  Q
    | ||||| || |||||||||||||| ||||| || || || |  |||||||||||||||||||| |||||||| || ||||  | |||||||||||| ||    
23465460 gatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattccataaaacagagaaagtggaagaagaaatacagtgcataataag 23465361  T
257 tttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggcc 356  Q
    |||| | ||||||| ||||||  |||| ||||| ||||| ||   |||||||||||  || | ||||||||| || |||||||| || || ||||| |||    
23465360 tttgatagtaatgtttgggaatccaaaatcatgcagacacttatgaagaaaatccctgttgacattatcaaaagctttttcaaggtctagcttaaaagcc 23465261  T
357 acaaaccctttcttctt---------tttggatcttctcatgaagtgaacaatttcgtgcaaaacaat-tgaattgtcagttgttcccctaccatgtaga 446  Q
    ||| | ||||| || ||         |||  ||||| ||||||| ||||||||||| | ||||| ||  ||| |||||||| || ||||||||| | |||    
23465260 acataacctttttttttattttttattttttatcttttcatgaaatgaacaatttcctccaaaaaaaaatgagttgtcagtagtgcccctaccaggcaga 23465161  T
447 aaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaa 546  Q
    ||||| || || |||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||| || ||||| ||||  ||||||||||| |    
23465160 aaactgctctgatagggaccaataataatattaagaagcggcctgagacggtgaaccaagactttggtgataagcttgtaaacaacattgcaaaggctga 23465061  T
547 tgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagc 646  Q
    |||||| |||||||||  | ||  ||||||||||  |||| |||||||| | ||||||||||||| | |||| ||| ||||||| ||| |||||||||||    
23465060 tgggtctaaagtctttgtaggtattgggagggtcggttttaggaatgagagaaatgagggtgtcaaaaatttcaggatcaaaggcacctgtttggaaagc 23464961  T
647 attttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
        || ||||||| |||||||||||||||| |||||||||    
23464960 caaatgcaccatattgaaaatatcatctccagtaatgtgcc 23464920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 307 - 604
Target Start/End: Complemental strand, 1524930 - 1524633
Alignment:
307 aatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtg 406  Q
    ||||||| || | ||||||||| || || || ||||| |||||||| || ||| | ||||| |||||||| ||| ||||||||||||| |||||||| ||    
1524930 aatcccagttaacattatcaaaagctttctctagatctagtttaaaagctacacaaccttttttcttttttgattttctcatgaagtggacaatttcctg 1524831  T
407 caaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaag 506  Q
    ||||||||| ||||| ||||  |||||||||||| | |||||||||||||| ||||| |||||||||  ||| ||||||||||| ||    | ||||||     
1524830 caaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaataatattatttagaatcggtctcagtctattaaccaaa 1524731  T
507 actttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctt--taaatgttgtgggagggtcaattttgggaatgagggcaatgag 604  Q
    ||||||||||| | ||| || ||||||||||| |  || ||||||| ||| ||||  |||||||  | |||| |||||| ||||||||||| ||||||||    
1524730 actttggtgataattttataaacaatgttgcacatactgatgggtctaaaatctttgtaaatgt--taggagtgtcaatcttgggaatgagtgcaatgag 1524633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 96 - 604
Target Start/End: Complemental strand, 50452069 - 50451561
Alignment:
96 gcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtg 195  Q
    |||||||| || || ||||| ||||| |||||||| |  |||||||| |||| ||| || || ||||| || || || ||||| || || || || || |    
50452069 gcattgttaatagcaatagatagcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcg 50451970  T
196 gaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagaca 295  Q
    | |  ||||||||||||||||| |  |||||||| || || |||||||| ||||| || |||||| |||| ||||| || ||  |||| ||||| || ||    
50451969 gcattttgttaccattccataagatagagaaagtggaggaggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggca 50451870  T
296 atttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtga 395  Q
    |    ||||||||||||| || | |||||||||||| ||||| | ||| || || || || ||| | ||||| ||||| || ||  | ||||| || |||    
50451869 agaattaagaaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatga 50451770  T
396 acaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagat 495  Q
    | |||||| ||||||||||| || || ||||  |||||||||| | | ||||| || |||||||| || ||||||| |  ||| || || ||||| |||     
50451769 ataatttcctgcaaaacaatagagttatcagaagttcccctactaggcagaaagctgctttggtaagggccaataagattattgagtataggtctaagac 50451670  T
496 ggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgag 595  Q
    | || || | |||||| ||||| |  ||||| |  || ||||||||||| || |||| |||||||||||| || ||||| |||||| |||||||||||||    
50451669 gatgcacaaggactttagtgataatcttgtagattatattgcaaaggctgataggtctaaagtctttaaaggtagtgggggggtcagttttgggaatgag 50451570  T
596 ggcaatgag 604  Q
     ||||||||    
50451569 tgcaatgag 50451561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 31325133 - 31325305
Alignment:
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    |||| ||||||||||| | ||||||||| || || || || || ||||| || || ||  | || |||||||| |||||||||||||||||||| |||||    
31325133 taaggaaatcccaattgacattatcaaaagctttctccaggtcaagtttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaat 31325232  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata 473  Q
    ||| |||||||||||||| || ||||  |||||||||||| | |||||||| ||| ||||||| |||||||||    
31325233 ttcctgcaaaacaattgagttatcagaagttcccctaccaggcagaaaactgcttcggtaggggccaataata 31325305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 239 - 609
Target Start/End: Original strand, 50236684 - 50237054
Alignment:
239 gacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttca 338  Q
    |||||| ||||| ||||||||| |||| ||||| || ||  |||| ||||| ||||||    | || || ||| |||| | ||||||||| ||||||||     
50236684 gacacaatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggagacaagaattgaggaagtcctaattaacattatcaaaagccttttcc 50236783  T
339 agatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctac 438  Q
    | ||| || ||||| || ||| | || |||||  ||||| ||||||||||||| ||||||||||| ||||||||||| || || |||| ||| |||||||    
50236784 aaatcaagcttaaaagctacatagcccttctttcttttgaatcttctcatgaaatgaacaatttcctgcaaaacaatcgagttatcagatgtacccctac 50236883  T
439 catgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca 538  Q
    || | |||||| | ||||| |||||||||||||||  |||||| || || |  ||| | || ||||| ||||| ||||| |  ||||| |||||||| ||    
50236884 caggcagaaaaatgctttgatagggaccaataatattattaaggatgggccgaagacgatgcaccaaaactttagtgataatcttgtagacaatgttaca 50236983  T
539 aaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt 609  Q
    |||||| || |  | |||||||||  | || | |||  | |||||||| |||||||| |||||||| ||||    
50236984 aaggctgatagacctaaagtctttgtaggtggcgggcagatcaattttaggaatgagtgcaatgagtgtgt 50237054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 494
Target Start/End: Complemental strand, 43298283 - 43298134
Alignment:
345 agtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgta 444  Q
    ||||| ||||| ||| | || ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| || ||||  |||||||||| | | |    
43298283 agtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcctgcaaaacaattgagttatcagaagttcccctactaggca 43298184  T
445 gaaaactactttggtagggaccaataataacattaagaatcggtctgaga 494  Q
    ||||||| |||||||| || ||||||| |  ||| ||||| |||||||||    
43298183 gaaaactgctttggtaagggccaataagattattgagaataggtctgaga 43298134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 10103958 - 10104022
Alignment:
398 aatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    |||||| |||||||||||||| || ||||  |||||||||||| | ||||| |||||||| ||||    
10103958 aatttcctgcaaaacaattgagttatcagccgttcccctaccaggcagaaagctactttgatagg 10104022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 153; Significance: 1e-80; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 311 - 687
Target Start/End: Original strand, 13027606 - 13027980
Alignment:
311 ccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaa 410  Q
    |||||| | |||||||||  | ||||||||||||||||| || |||||| |||||||||||||||||| | | ||||||||||| || ||||| || |||    
13027606 ccaattaacattatcaaagtctttttcaagatccagtttgaaagccacataccctttcttctttttggttttcctcatgaagtgtactatttcctgtaaa 13027705  T
411 acaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactt 510  Q
    ||||| ||||||||| | || ||||||||| |||||||||||||||| ||||| ||||| |||||||||||||| |||||||| | ||||||||||||||    
13027706 acaatcgaattgtcaatggtgcccctaccaggtagaaaactactttgataggggccaatgataacattaagaattggtctgaggttgtgaaccaagactt 13027805  T
511 tggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtc 610  Q
    | ||||||||||||||  |||| ||||| |||||||| |||  |||||||||||| ||  |||| |||||  | ||||||||||||| |||||| || ||    
13027806 tagtgatgagtttgtaagcaatattgcagaggctaat-ggtttaaagtctttaaaagtgatggg-gggtcggtcttgggaatgagggaaatgagagtatc 13027903  T
611 agatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc 687  Q
    ||| || || || ||||| ||||||||||||||||||  ||| |||||||| ||||| |||||||||||||||||||    
13027904 agagatgtttggatcaaaagtaccagtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgcc 13027980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 200 - 561
Target Start/End: Complemental strand, 35233556 - 35233195
Alignment:
200 cttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaattt 299  Q
    |||||| |||||||||||||  || ||||||||| |||  |||||||||||||| |  ||| |||| ||||  |||||  | |||||||| || |||||     
35233556 cttgtttccattccataaaatagaaaaagtagataaagaaacacagtgcataataaacttgatggtgatgttagggaaaccgaagtcatgaaggcaatta 35233457  T
300 gtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaa 399  Q
     ||||||| ||||| || | ||| ||||| || || || ||||| ||||| || || ||| |||||||||||||||||||| ||||||||||||||||||    
35233456 ctaagaaactcccagttgacattgtcaaaagctttctctagatcaagtttgaaagctacataccctttcttctttttggattttctcatgaagtgaacaa 35233357  T
400 tttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtg 499  Q
    |||| | |||||||||||| |||||||  || |||||||||   |||||||| ||||| ||||| |||||||||  ||| |  |||||||||||| ||||    
35233356 tttccttcaaaacaattgagttgtcagaggtgcccctaccagacagaaaactgctttgataggggccaataatattatttaagatcggtctgagacggtg 35233257  T
500 aaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctt 561  Q
    |||||||||||| || | ||| |||||||| |||||||| ||||| || ||||  |||||||    
35233256 aaccaagactttagtaaggagcttgtacactatgttgcacaggctgattggtctgaagtctt 35233195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 379 - 687
Target Start/End: Complemental strand, 13599475 - 13599167
Alignment:
379 atcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacatt 478  Q
    ||||||||||||| || |||||||| ||||||||||||||||||||||| || ||| || || || ||||| ||||||| ||||| ||||||||||||||    
13599475 atcttctcatgaaatgtacaatttcctgcaaaacaattgaattgtcagtggtgcccttatcaggttgaaaaatactttgataggggccaataataacatt 13599376  T
479 aagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggaggg 578  Q
    |||||| ||| ||||| |||||||||||||||||||||| || ||||| |||||||| || ||||| || |||| || ||||||  | ||  | |||||     
13599375 aagaatgggtatgagacggtgaaccaagactttggtgataagcttgtatacaatgttacacaggctgataggtctaacgtctttgtaggtgtttggagga 13599276  T
579 tcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaa 678  Q
    ||||||||||| ||||||| |||||| || |  || ||  |||| |||||||||||  ||||||| ||    || ||||||||  |||||||||| ||||    
13599275 tcaattttgggtatgagggaaatgagagtatttgaaatactaggatcaaaggtacctttttggaaggctgactgcaccatatgagaaatatcatccccaa 13599176  T
679 taatgtgcc 687  Q
    |||||||||    
13599175 taatgtgcc 13599167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 603
Target Start/End: Original strand, 11297048 - 11297285
Alignment:
366 ttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggac 465  Q
    |||||| |||| |||||| |||||||||| |  |||||||||||||||||||| || ||||  || || |||||| | |||||||| ||||| |||| ||    
11297048 ttcttccttttagatcttatcatgaagtggatgatttcgtgcaaaacaattgagttatcagaagtaccactaccaggcagaaaactgctttgataggaac 11297147  T
466 caataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaa 565  Q
    ||||||||  | ||||||| ||||||||| | || ||||| ||||| ||||| | |||||| |  |||||||| || || ||||||| ||| |||||  |    
11297148 caataatattagtaagaataggtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttgcagagactgatgggtctaaaatctttgta 11297247  T
566 tgttgtgggagggtcaattttgggaatgagggcaatga 603  Q
    |||  | ||||| |||||||| |||||||| |||||||    
11297248 tgtactaggaggatcaatttttggaatgagtgcaatga 11297285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 311 - 552
Target Start/End: Original strand, 12646172 - 12646413
Alignment:
311 ccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaa 410  Q
    |||||| | ||||||||| ||||||| ||| || || |||||||||||| | || ||||| || || ||||||||||||   ||||  ||||| ||||||    
12646172 ccaattgacattatcaaaagcctttttaaggtctagcttaaaggccacataacccttctttttctttgatcttctcatgtgatgaatgatttcctgcaaa 12646271  T
411 acaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactt 510  Q
    ||||    ||||||||| || || |||||| | | |||||| |||||||||||  ||||||||  |  |||||||||||||||  |  | || | |||||    
12646272 acaacaacattgtcagtggtgcctctaccaggcaaaaaactgctttggtaggggtcaataatagtaacaagaatcggtctgaggcgaaggacaaggactt 12646371  T
511 tggtgatgagtttgtacacaatgttgcaaaggctaatgggtc 552  Q
    |||| |||| |||||| |||||||||||||||||||||||||    
12646372 tggtaatgattttgtagacaatgttgcaaaggctaatgggtc 12646413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 13599823 - 13599621
Alignment:
30 aggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatac 129  Q
    ||||| ||||| || | |||||| || | |||||| | ||| ||||||| | | |||||| | || ||||||||||||||    || || ||||||||||    
13599823 aggagatgagataggtgcggccctgtgttattgattctgataggttcccccttcctttgatttactgcattgttgatggcagctgaaagtttttccatac 13599724  T
130 acaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagt 229  Q
    ||||||||||||||||||  || ||||| ||||| || || ||| ||||||| ||||| || || |||| ||||||||||||||||||||  ||||||||    
13599723 acaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttaccattccataaaatagagaaagt 13599624  T
230 aga 232  Q
    |||    
13599623 aga 13599621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 204 - 494
Target Start/End: Original strand, 32725548 - 32725838
Alignment:
204 ttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaa 303  Q
    ||||| ||||||||||  ||||| || ||||| |||||||| ||||| || || ||| |||| ||||| || ||  |||| ||| | || |||    |||    
32725548 ttaccgttccataaaatagagaatgtggatgatgtgacacaatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggaggcaagaattaa 32725647  T
304 gaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttc 403  Q
    ||||||||||  | | ||||||||| || || || || || ||||| || || ||| | || ||||||||||| ||||||||||| |||||||| |||||    
32725648 gaaaatcccatctgacattatcaaaagctttctccaggtcaagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttc 32725747  T
404 gtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgaga 494  Q
     | |||||||||||| ||||||   |||||||||  | | |||||||| |||||||| || ||||||| |  ||||||||| |||||||||    
32725748 ctacaaaacaattgagttgtcataagttcccctattaggcagaaaactgctttggtaagggccaataagattattaagaataggtctgaga 32725838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 24990618 - 24990820
Alignment:
72 ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa 171  Q
    |||||||| |||| ||| || |||||||| || || |||||||| ||||| ||||| || |  ||||| ||||||| |||||| |||||||| || |  |    
24990618 ggttcccaacttccttggcttacagcattatttatagcgatagaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctga 24990717  T
172 gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc 271  Q
    ||||||| || ||||| ||  | || |  |||||||| ||||||||||  || ||||| || || |||||||||||||| ||||||||| |||| |||||    
24990718 gaccatgggtgggcttgaaagggggcattttgttaccgttccataaaatagaaaaagtggaggaggtgacacagtgcatgatgagtttgatggtgatgtc 24990817  T
272 tgg 274  Q
    |||    
24990818 tgg 24990820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 538
Target Start/End: Original strand, 27853075 - 27853373
Alignment:
240 acacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaa 339  Q
    ||||| ||||||||||  ||| | |||||||| |||||| ||||||| || || ||   | ||||||||||||| || | |||||||||  |||||||||    
27853075 acacaatgcataatgaacttggttgtaatgtcagggaagccaaagtcttgaaggcaggatttaagaaaatcccagttaacattatcaaactccttttcaa 27853174  T
340 gatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctacc 439  Q
    |||| || || |||||| |||| || || ||||| || ||||||||||| || |||||||||||  | |||||||  | ||| |||   || || |||||    
27853175 gatcaagcttgaaggccgcaaaaccctttttcttcttcgatcttctcataaaatgaacaatttccggaaaaacaaccgcattatcaaaagtgcctctacc 27853274  T
440 atgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca 538  Q
    | |||| |||||  |||||||||| |||||||||  ||  | ||| || |  || ||||  ||||||||||| ||||||| ||| || |||||||||||    
27853275 aggtaggaaactgttttggtaggggccaataatagtatccaaaataggacgaaggtggttgaccaagactttagtgatgattttataaacaatgttgca 27853373  T

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Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 609
Target Start/End: Original strand, 24894082 - 24894328
Alignment:
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    ||||||||| | || ||| | ||||||||||||| |||||| |||||||||||||| || ||||  |||||||||||| | ||||| || |||||| | |    
24894082 cctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctaccaggcagaaagctgctttggcaag 24894181  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    | ||||||| |  | | || || ||||||||| | || || |  ||||| | ||| |  ||||| |  |||||||| || || ||||||| ||| |||||    
24894182 ggccaataagattactgaggataggtctgagacgatgcacaagaactttagggataatcttgtagattatgttgcatagactgatgggtctaaaatcttt 24894281  T
563 aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt 609  Q
     || || ||||| ||||| ||||| |||||||| |||||||| ||||    
24894282 gaaagtggtgggggggtcgattttcggaatgagtgcaatgagagtgt 24894328  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 24893791 - 24893993
Alignment:
72 ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa 171  Q
    |||||||| |||| |||||| ||||| || || || || |  || ||||||||||| || |  ||||| ||||||| |||||| |||||||| || |  |    
24893791 ggttcccaacttccttgactcacagcgttattaatagcaagggaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctga 24893890  T
172 gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc 271  Q
    ||||||| || ||||| ||  | || |  ||||||||||||||||| |  ||||| || || || |||||||| ||||| ||||| ||| |||| |||||    
24893891 gaccatgtgtgggcttgaaagggggcattttgttaccattccataatatggagaatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc 24893990  T
272 tgg 274  Q
    |||    
24893991 tgg 24893993  T

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Target: scaffold0214 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 363 - 616
Target Start/End: Complemental strand, 8871 - 8618
Alignment:
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    ||||||||||| |||||||||| |||| |||||| |||||| ||||||||||| | ||||||||| || ||||||||| | || ||||| |||||||| |    
8871 cctttcttcttcttggatcttcgcatgtagtgaataatttcctgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaag 8772  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt 562  Q
    ||||||||||| ||||||| || ||||||||  |||| || |  || || ||||| | |||||| |  ||||| |||||||||||||||| |||||||||    
8771 gaccaataatatcattaaggataggtctgaggcggtggacaagaaccttagtgataattttgtagatgatgttacaaaggctaatgggtctaaagtcttt 8672  T
563 aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatat 616  Q
     || |||  ||||||||||| |||||| || ||||| ||||| || ||||||||    
8671 gaaggttaagggagggtcaactttggggataagggctatgagtgtatcagatat 8618  T

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Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 301 - 526
Target Start/End: Complemental strand, 23944984 - 23944759
Alignment:
301 taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat 400  Q
    |||||||||||||||| |  |||||||| |  || ||||| || || ||||| |||||||| | | | ||||| || |||||||||||| | |||| |||    
23944984 taagaaaatcccaattaacgttatcaaaggatttctcaaggtcaagcttaaacgccacaaatcttgttttcttcttagatcttctcatgtaatgaataat 23944885  T
401 ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga 500  Q
    ||| ||||||||||| ||||| ||||  |||||||||||| | ||||| || |||||||| || || ||||||  ||||||||| ||||||||| | ||     
23944884 ttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcctataatattattaagaataggtctgagacgctgg 23944785  T
501 accaagactttggtgatgagtttgta 526  Q
    ||||| ||||| || |||| ||||||    
23944784 accaaaactttagtaatgattttgta 23944759  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 473
Target Start/End: Original strand, 23620770 - 23620974
Alignment:
269 gtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttc 368  Q
    |||||||||| |||| ||||| |||||   | ||||||||| |||||| | ||||||||| || || ||||| || ||||| || |||||| | |||||     
23620770 gtctgggaagccaaaatcatggagacatgatctaagaaaattccaattgacattatcaaaagcattctcaaggtcaagtttgaaagccacatatcctttt 23620869  T
369 ttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaa 468  Q
    ||| ||||| | || | |||||| || |||||||| ||||||||||| || ||||||   || || ||||| || |||||||  ||||||||||||||||    
23620870 ttccttttgaacctccgcatgaaatggacaatttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaa 23620969  T
469 taata 473  Q
    |||||    
23620970 taata 23620974  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 483
Target Start/End: Original strand, 6641269 - 6641379
Alignment:
373 ttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataat 472  Q
    ||||||||||| |||| || || |||||||| ||||||| |||||| || |||   || ||||||| | |||||||||||||||| ||||| ||||||||    
6641269 ttttggatcttttcataaaatggacaatttcctgcaaaataattgagttatcataagtgcccctacgaggtagaaaactactttgataggggccaataat 6641368  T
473 aacattaagaa 483  Q
    |  ||||||||    
6641369 attattaagaa 6641379  T

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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 517
Target Start/End: Complemental strand, 31814549 - 31814395
Alignment:
363 cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg 462  Q
    ||||||||||||||||| || | ||| || ||||  | ||| ||||||||||| | ||| | |||||| ||||||||| | | ||||||  |||| |||     
31814549 cctttcttctttttggaactgcgcataaaatgaaataattcctgcaaaacaatggcatttttagttgtgcccctaccaggcaaaaaactgatttgataga 31814450  T
463 gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgat 517  Q
    |||||||||||| || ||| || ||||||||  ||||||| | ||||||||||||    
31814449 gaccaataataatatcaaggatgggtctgaggcggtgaacaaggactttggtgat 31814395  T

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