View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8911_low_20 (Length: 687)
Name: NF8911_low_20
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_20 |
 |  |
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| [»] chr4 (7 HSPs) |
 |  |
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| [»] chr8 (6 HSPs) |
 |  |
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| [»] chr3 (11 HSPs) |
 |  |
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| [»] chr2 (12 HSPs) |
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| [»] chr7 (4 HSPs) |
 |  |
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| [»] chr1 (7 HSPs) |
 |  |
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| [»] chr6 (11 HSPs) |
 |  |
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| [»] scaffold0214 (1 HSPs) |
 |  |  |
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Alignment Details
Target: chr4 (Bit Score: 627; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 13 - 687
Target Start/End: Original strand, 7587522 - 7588196
Alignment:
| Q |
13 |
ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7587522 |
ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat |
7587621 |
T |
 |
| Q |
113 |
agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7587622 |
agagagcttttccatacacaagatgaagagataaggagagagagggtcaccctggcgaagaccatgagttggcttaaactgcggaagcttgttaccattc |
7587721 |
T |
 |
| Q |
213 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||| |||| |
|
|
| T |
7587722 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaagccaaagtcatttagacaatttttaagaaactccc |
7587821 |
T |
 |
| Q |
313 |
aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7587822 |
aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcctgcaaaac |
7587921 |
T |
 |
| Q |
413 |
aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg |
512 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
7587922 |
aattgaattgtcagttgttcccctacgaggtagaaaactactttggtaggggccaataataacattaagaatcggtctgagacggtgaaccaagactttg |
7588021 |
T |
 |
| Q |
513 |
gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcag |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7588022 |
gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcagttttgggaatgagggcaatgagggtgtcag |
7588121 |
T |
 |
| Q |
613 |
atattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7588122 |
atattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
7588196 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 375 - 616
Target Start/End: Original strand, 46784731 - 46784971
Alignment:
| Q |
375 |
ttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataa |
474 |
Q |
| |
|
|||||||| | |||||||||||||||||| ||||||||||| || ||||||| || ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46784731 |
ttggatctccacatgaagtgaacaatttcctgcaaaacaatagagttgtcagaggtgcccttacctggtagaaaactactttggtagggaccaataatat |
46784830 |
T |
 |
| Q |
475 |
cattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtggg |
574 |
Q |
| |
|
||| |||||||| ||||| ||| || | |||||||||||||| |||||| |||||||||||||| || |||| ||||||||| | ||| | || |
|
|
| T |
46784831 |
tattgagaatcgg-ctgaggcggttgacaaggactttggtgatgattttgtaggttatgttgcaaaggctgataggtctaaagtctttgtaggttttagg |
46784929 |
T |
 |
| Q |
575 |
agggtcaattttgggaatgagggcaatgagggtgtcagatat |
616 |
Q |
| |
|
|| |||||||| || |||||||||||||| ||||| ||||| |
|
|
| T |
46784930 |
tggatcaattttagggatgagggcaatgagagtgtcggatat |
46784971 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 301 - 526
Target Start/End: Complemental strand, 33803944 - 33803719
Alignment:
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
|||||||||||||||| | ||||||||| || || ||||| || || ||||| |||||||| ||||| ||||| || |||||||||||| | |||| ||| |
|
|
| T |
33803944 |
taagaaaatcccaattaacattatcaaaggctttctcaaggtcaagcttaaacgccacaaatccttttttcttcttagatcttctcatgtaatgaataat |
33803845 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
||| ||||||||||| ||||| |||| |||||||||||| | ||||| || |||||||| || || |||||| ||||||||| ||||||||| | || |
|
|
| T |
33803844 |
ttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcctataatattattaagaataggtctgagacgctgg |
33803745 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgta |
526 |
Q |
| |
|
||||| ||||| || |||| |||||| |
|
|
| T |
33803744 |
accaaaactttagtaatgattttgta |
33803719 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 386 - 580
Target Start/End: Complemental strand, 48848055 - 48847861
Alignment:
| Q |
386 |
catgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatc |
485 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| |||||||| || ||||||||| |||||||| ||||| ||| ||||||||||| ||||||| |
|
|
| T |
48848055 |
catgaagtgagtgatttcctgcaaaacaattgtgttgtcagtagtgcccctaccagacagaaaactgctttgatagagaccaataatattgctaagaata |
48847956 |
T |
 |
| Q |
486 |
ggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtc |
580 |
Q |
| |
|
||| | || | ||||| | |||||||||||||| |||||| | |||||||| ||||||||||| | ||||||||| | || ||||||||||| |
|
|
| T |
48847955 |
ggtattaggcgatgaacaaggactttggtgatgattttgtagaagatgttgcataggctaatggggcaaaagtctttgtaagtggtgggagggtc |
48847861 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 471
Target Start/End: Complemental strand, 3881889 - 3881511
Alignment:
| Q |
96 |
gcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtg |
195 |
Q |
| |
|
|||||||| || || ||||| |||||||||||||| | |||||||| ||| ||| || || ||||| || || || ||||| || || || || || | |
|
|
| T |
3881889 |
gcattgttaatagcaatagatagcttttccatacaaagaatgaagaggtaaagagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcg |
3881790 |
T |
 |
| Q |
196 |
gaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagaca |
295 |
Q |
| |
|
| | ||||||||||||||||| | ||||| || || || |||||||| ||||| || |||||| |||| ||| | || || |||| ||||| || || |
|
|
| T |
3881789 |
gcattttgttaccattccataagatagagaaggtggaggaggtgacacaatgcatgataagtttgatggtgatggccggaaaatcaaactcatgaaggca |
3881690 |
T |
 |
| Q |
296 |
atttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttg---gatcttct-catgaa |
391 |
Q |
| |
|
| ||||||||||||| || | |||||||||||| ||||| | ||| || || || || ||| | ||||||||||| || || ||||| ||| || |
|
|
| T |
3881689 |
agaattaagaaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaagcaacataacctttcttcttcttcttaga-cttcttcataaa |
3881591 |
T |
 |
| Q |
392 |
gtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa |
471 |
Q |
| |
|
|||| |||||| ||||||||||| || || |||| |||||||||||| | |||||||| |||||||| || ||||||| |
|
|
| T |
3881590 |
atgaataatttcctgcaaaacaatagagttatcagaagttcccctaccaggcagaaaactgctttggtaagggccaataa |
3881511 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 102 - 609
Target Start/End: Original strand, 54477389 - 54477897
Alignment:
| Q |
102 |
ttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagct |
201 |
Q |
| |
|
||||| || |||||||| |||||||| || | ||||||||||||| || | ||| ||||| ||||| |||||||| || ||||| || |||||||| |
|
|
| T |
54477389 |
ttgatagcaatagagagattttccatgcaaagaatgaagagataaggggacaaaggatcaccttggcgcagaccatgtgtaggcttgaaagatggaagct |
54477488 |
T |
 |
| Q |
202 |
tgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgt |
301 |
Q |
| |
|
|||| |||||||| | | || | | ||||| | ||||| ||||| ||||| ||| |||| ||||| ||||| | || ||||| || || || | |
|
|
| T |
54477489 |
tgtttccattccaaaggataaagtattttgatgatgaaacacaatgcatgatgagcttgatggtgatgtcagggaactcgaaatcatgaaggcagttgct |
54477588 |
T |
 |
| Q |
302 |
aagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatt |
401 |
Q |
| |
|
||| || |||||||| | ||| ||||| || |||| | ||| || ||||| || ||| | || ||||| |||||||||| || ||||| |||| ||| |
|
|
| T |
54477589 |
aaggaattcccaattgacattgtcaaaagcttttttcaaatcaagcttaaaagctacataacccttcttacttttggatctccttatgaaatgaattatt |
54477688 |
T |
 |
| Q |
402 |
tcgtgc-aaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
|| ||| |||||||| || || || | || ||||| ||| | |||||||| |||||| |||| |||||||| | ||||||| || || || ||||| |
|
|
| T |
54477689 |
tcctgcaaaaacaatagagttatctgaagtgccccttccaggcagaaaactgctttggcaggggccaataatgttagtaagaataggccttagtcggtga |
54477788 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa |
600 |
Q |
| |
|
||||| || || ||||| | |||||| | || || |||||||| ||||||| ||||||||| | || ||||| ||||||||| | |||||||| |||| |
|
|
| T |
54477789 |
accaaaacctttgtgataattttgtagatgatattacaaaggctgatgggtctgaagtctttataagtagtgggtgggtcaattataggaatgagtgcaa |
54477888 |
T |
 |
| Q |
601 |
tgagggtgt |
609 |
Q |
| |
|
|||| |||| |
|
|
| T |
54477889 |
tgagagtgt |
54477897 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 442 - 474
Target Start/End: Complemental strand, 46913767 - 46913735
Alignment:
| Q |
442 |
gtagaaaactactttggtagggaccaataataa |
474 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
|
|
| T |
46913767 |
gtagaaaactactttggtaggggccaataataa |
46913735 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 380; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 15 - 687
Target Start/End: Original strand, 26708601 - 26709277
Alignment:
| Q |
15 |
acatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatag |
114 |
Q |
| |
|
||||||||||| ||||| ||||| || ||||| | ||| ||| |||||||| ||||| |||||||||||| ||||||| ||||||||| |||||||||| |
|
|
| T |
26708601 |
acatcatccgcaaaaagaaggtgtgaaagatatgacccgatattattgatacagattgattcccaccttctctgactgatagcattgttaatggcgatag |
26708700 |
T |
 |
| Q |
115 |
agagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattcca |
214 |
Q |
| |
|
|||||||||||||||||| ||||| || |||| |||||||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||||||| |
|
|
| T |
26708701 |
agagcttttccatacacagtatgaaaaggtaaggagagagagggtcaccctggcgaagaccatgagatggcttaaattgaggaagcttgtttccattcca |
26708800 |
T |
 |
| Q |
215 |
taaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaa |
314 |
Q |
| |
|
|| || |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||| |||| ||||| ||||||||| ||||||| |||||| |
|
|
| T |
26708801 |
tagaattgagaaagtagatgaagtgacacaatgcataatgagcttgctggtaatttctgggaagccaaaatcatgcagacaatttctaagaaactcccaa |
26708900 |
T |
 |
| Q |
315 |
tttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaa |
414 |
Q |
| |
|
| | ||||||||| || |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| | ||||||| |
|
|
| T |
26708901 |
tggacattatcaaaggcattttcaaggtccagtttaaaggccacaaaccctttcttctttttagattttctcataaagtgaacaatttcctataaaacaa |
26709000 |
T |
 |
| Q |
415 |
ttgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggt |
514 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || | |||||||||| ||||||||||||||||||| |
|
|
| T |
26709001 |
ttgaatagtcagttgttcccctaccagttagaaaactactttggtaggggccaataataacattgagtaacggtctgagacggtgaaccaagactttggt |
26709100 |
T |
 |
| Q |
515 |
gatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgt----tgtgggagggtcaattttgggaatgagggcaatgagggtgtc |
610 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||| ||||||||||||||| | ||| ||||| |||||||||||||||||||||| ||||| |
|
|
| T |
26709101 |
gatgagcttgtacacaatgttgcaaatgataatgggtctaaagtctttaaatgtgttgggggggggggtcggttttgggaatgagggcaatgagtgtgtc |
26709200 |
T |
 |
| Q |
611 |
agatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
26709201 |
agatatttgtcggtcaaaggtaccagtttggaaagcagtttgaaccatatgaaaaatgtcatctccaataatgtgcc |
26709277 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 324 - 678
Target Start/End: Complemental strand, 26973399 - 26973044
Alignment:
| Q |
324 |
tcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgt |
423 |
Q |
| |
|
||||| || ||||| || || ||||| || || |||||||| ||||||||||||||||| |||||||| |||| ||||| ||||||||||| || || | |
|
|
| T |
26973399 |
tcaaaagctttttccaggtcaagtttgaaagctacaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttat |
26973300 |
T |
 |
| Q |
424 |
cagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagttt |
523 |
Q |
| |
|
||| || ||||| ||| | |||||||| ||||||||||| ||||||||| | ||||||| || || || |||||||||| || || ||||||| ||| |
|
|
| T |
26973299 |
cagaggtgcccctcccaggcagaaaactgctttggtaggggccaataatattagtaagaatgggccttagccggtgaaccaacaccttagtgatgatttt |
26973200 |
T |
 |
| Q |
524 |
gtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt-gggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagg |
622 |
Q |
| |
|
||| | ||| || |||||||||||||| | ||||||||| |||| || ||| ||||||||||| || ||||| || ||||| |||| || || | || |
|
|
| T |
26973199 |
gtaaataatattacaaaggctaatgggcctgaagtctttatatgtagtggggggggtcaatttttggtatgagtgcgatgagagtgtttgaaatctctgg |
26973100 |
T |
 |
| Q |
623 |
gtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaa |
678 |
Q |
| |
|
||||||| ||| |||||||||| | || ||||| ||| | ||||||||||||| |
|
|
| T |
26973099 |
gtcaaagtaacccttttggaaagctgtgtggaccatttggtagatatcatctccaa |
26973044 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 357 - 574
Target Start/End: Complemental strand, 14759835 - 14759618
Alignment:
| Q |
357 |
acaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactacttt |
456 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |||| ||||| ||||||||||| || || |||| || ||||| ||| | |||||||| |||| |
|
|
| T |
14759835 |
acaaaccccttcttctttttggatctcctcatgaaatgaattatttcctgcaaaacaatggagttatcagaagtgcccctcccaggcagaaaactgcttt |
14759736 |
T |
 |
| Q |
457 |
ggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaa |
556 |
Q |
| |
|
||||||| ||||||||| | ||||||| || || || ||||||||| || || ||||||| |||||| | ||| || |||||||||||||||| || |
|
|
| T |
14759735 |
ggtaggggccaataatattagtaagaatgggccttagccggtgaaccagcaccttagtgatgattttgtaaataatattacaaaggctaatgggtctgaa |
14759636 |
T |
 |
| Q |
557 |
gtctttaaatgttgtggg |
574 |
Q |
| |
|
||||||| |||| ||||| |
|
|
| T |
14759635 |
gtctttatatgtagtggg |
14759618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 303 - 538
Target Start/End: Complemental strand, 38348434 - 38348199
Alignment:
| Q |
303 |
agaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaattt |
402 |
Q |
| |
|
||||| ||||| || | ||||||||| || ||||| ||||||| ||| || || ||| | ||||| |||||||| ||| |||||||| || ||||||| |
|
|
| T |
38348434 |
agaaattcccagttgacattatcaaaagctttttctagatccattttgaaagcaacacaaccttttttcttttttgattttctcatgtgatggacaattt |
38348335 |
T |
 |
| Q |
403 |
cgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaac |
502 |
Q |
| |
|
| ||||||| ||| ||||| |||| |||||||||||| | || || || ||||| ||||| ||||||||| ||||||||||||||| | |||||| |
|
|
| T |
38348334 |
cctgcaaaataatagaattatcagaagttcccctaccaggcaggaagctgctttgataggggccaataatattattaagaatcggtctcaatctgtgaac |
38348235 |
T |
 |
| Q |
503 |
caagactttggtgatgagtttgtacacaatgttgca |
538 |
Q |
| |
|
||| |||| |||||| | |||||| ||||||||||| |
|
|
| T |
38348234 |
caaaacttaggtgataattttgtaaacaatgttgca |
38348199 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 228 - 519
Target Start/End: Complemental strand, 26587266 - 26586975
Alignment:
| Q |
228 |
gtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaa |
327 |
Q |
| |
|
|||||||||||||| || ||||| ||||||||| ||| ||| || || | || ||||| |||||| | ||||||| ||||| || | ||| |||| |
|
|
| T |
26587266 |
gtagatgaagtgacgcaatgcatgatgagtttgatggcggcgtcaggaaatccgaaatcatgaagacaagtattaagaaactcccagttaacattgtcaa |
26587167 |
T |
 |
| Q |
328 |
atgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagt |
427 |
Q |
| |
|
|||| || |||||||| || || || || ||| | ||||||||| | || ||| | ||||| |||||| ||||||| |||||||||| || |||||| |
|
|
| T |
26587166 |
atgctttctcaagatcaagcttgaaagcaacatagcctttcttcctcttagatttcctcataaagtgagcaatttcctgcaaaacaaaagagttgtcata |
26587067 |
T |
 |
| Q |
428 |
tgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatga |
519 |
Q |
| |
|
|| |||||||| | |||||||| |||||||||||||||||||| ||||| ||||||||||| | || || | |||||||||||||| |
|
|
| T |
26587066 |
agtgcccctacctggcagaaaactgatttggtagggaccaataatattgttaaggatcggtctgaggcgatggacaaggactttggtgatga |
26586975 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 237 - 484
Target Start/End: Complemental strand, 13030234 - 13029987
Alignment:
| Q |
237 |
gtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgcctttt |
336 |
Q |
| |
|
|||||||| ||||| ||| |||| | || || ||||||||| |||| || || || ||| || ||||||| |||||| | ||||||||| | |||| |
|
|
| T |
13030234 |
gtgacacaatgcatgatggatttggtagtgatttctgggaagccaaaatcctggaggcaagtttgaagaaaaaaccaattgacattatcaaaagtttttt |
13030135 |
T |
 |
| Q |
337 |
caagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccct |
436 |
Q |
| |
|
||||||| || ||||| | | ||||||| ||||| || || |||||||||| || |||| ||||| ||||||| ||| ||||| || || || || |
|
|
| T |
13030134 |
caagatcaagcttaaaagtcgcaaaccccttctttttcttatatcttctcataaaatgaatgatttcctgcaaaataatgacattgttagaagtacctct |
13030035 |
T |
 |
| Q |
437 |
accatgtagaaaactactttggtagggaccaataataacattaagaat |
484 |
Q |
| |
|
|||| | || ||||||||||||||||| ||||||||| ||| |||||| |
|
|
| T |
13030034 |
accaggcaggaaactactttggtaggggccaataatagcatcaagaat |
13029987 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 13 - 687
Target Start/End: Original strand, 55024692 - 55025369
Alignment:
| Q |
13 |
ggacatcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgat |
112 |
Q |
| |
|
|||| ||||| |||||||| || ||||| | |||||| ||| | | |||||||||||||| |||||||| || ||| |||| ||||| |||||||| || |
|
|
| T |
55024692 |
ggacgtcatctgcgaaaagaagatgagataaatacggaccattgttgttgatacggattggatcccacctcctctgagtgactgcattattgatggcaat |
55024791 |
T |
 |
| Q |
113 |
agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc |
212 |
Q |
| |
|
||||||||||||||||| ||||||||||| || | ||||| || ||||| |||||||||| |||||| | ||||| || ||||||||||| |||||| |
|
|
| T |
55024792 |
tgagagcttttccatacataagatgaagaggtatggtgagagcggatcaccttggcgaagactatgagtagacttaagttgaggaagcttgttgccattc |
55024891 |
T |
 |
| Q |
213 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc |
312 |
Q |
| |
|
|| | ||| ||||| || ||||||| |||||| ||||||||||||||| | |||||||| ||||| |||| ||||||||||| ||| |||||| | || |
|
|
| T |
55024892 |
caaagaacagagaaggtggatgaagagacacaatgcataatgagtttgattgtaatgtcagggaaaccaaaatcatgtagacagttttgaagaaatttcc |
55024991 |
T |
 |
| Q |
313 |
aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac |
412 |
Q |
| |
|
| || | |||||| || || ||||| ||||||| ||||||||||||| ||||||||||||||| ||||| |||||| | ||||| | ||| |||||||| |
|
|
| T |
55024992 |
atttgacattatcgaaagctttttctagatccaacttaaaggccacaagccctttcttcttttttgatctcctcatgtaatgaactacttcctgcaaaac |
55025091 |
T |
 |
| Q |
413 |
aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg |
512 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||| ||||| ||||||||| |||| ||||| || ||| ||||||||||||||||| |
|
|
| T |
55025092 |
aattgaattgtcagtggtgcccctaccaggtagaaaactactttgataggggccaataatagcatttagaatgggctggaggcggtgaaccaagactttg |
55025191 |
T |
 |
| Q |
513 |
gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt---gggagggtcaattttgggaatgagggcaatgagggtgt |
609 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||| ||| || ||||| || || ||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
55025192 |
gtgatgagtttgtacacaatgttgcacaggctgatgggtctaaattccttaaaagtagtggggggggggtcggttttgggaatgagggcaatgagggtgt |
55025291 |
T |
 |
| Q |
610 |
cagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
|||||||| |||||||||| | ||| |||||||||||| ||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
55025292 |
cagatattctagggtcaaaagcacctgtttggaaagcagattgcaccatatggaagatatcatctccaataatgtgcc |
55025369 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 63 - 687
Target Start/End: Original strand, 3659558 - 3660182
Alignment:
| Q |
63 |
atacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcac |
162 |
Q |
| |
|
||||||||||| ||||| || ||||| |||| |||| || ||||| || ||||| ||||||||||||| |||||| || || | |||||| || |||| |
|
|
| T |
3659558 |
atacggattggctcccatctcctttggttgactgcatcatttatggcaatggagagtttttccatacacaggatgaacaggtagggagagagcggatcac |
3659657 |
T |
 |
| Q |
163 |
cctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgtt |
262 |
Q |
| |
|
| || |||||||||||||| |||||||| | |||||||| || |||||||| ||||| ||||| || || || | |||||| ||||| ||||| ||| | |
|
|
| T |
3659658 |
cttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattccacaaaacagagaaggtggaggatgagacacaatgcatgatgagcttgat |
3659757 |
T |
 |
| Q |
263 |
ggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaac |
362 |
Q |
| |
|
||||||||| ||||| | || ||||| ||||| || ||||| | |||||| | ||||||||| || ||||||||||||||||| || |||||| || |
|
|
| T |
3659758 |
ggtaatgtcagggaaaccgaaatcatgcagacagttatggagaaacttccaattaacattatcaaaggctttttcaagatccagtttgaaagccacatac |
3659857 |
T |
 |
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| || ||||| ||||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||| |
|
|
| T |
3659858 |
cctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgatagg |
3659957 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
| ||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
3659958 |
ggccaatgataacattaagaattggtctgaggcggtgaaccaagactttagtgatgagtttgtaagcaatattgcagaggctaatgggtctaaagtcttt |
3660057 |
T |
 |
| Q |
563 |
aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg |
662 |
Q |
| |
|
||| || |||| ||||| | ||||||||||||| ||||||||| ||||| || || || |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3660058 |
aaaagtgctgggggggtcggtcttgggaatgagggaaatgagggtatcagagatgtttggatcaaaggtaccagtttggaaagcagattggaccatatga |
3660157 |
T |
 |
| Q |
663 |
aaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
3660158 |
aaaatgtcatctccaataatgtgcc |
3660182 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 59 - 686
Target Start/End: Original strand, 49149712 - 49150336
Alignment:
| Q |
59 |
attgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagaggg |
158 |
Q |
| |
|
|||||| | ||| ||||||||| | |||||| ||||| ||||||||||||| | |||| ||||||||||| ||||||||||||||||| || |
|
|
| T |
49149712 |
attgattctgataggttcccacttcctttgattgacatcattgttgatggctactgagaatttttccatacaaaagatgaagagataagagga------- |
49149804 |
T |
 |
| Q |
159 |
tcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtt |
258 |
Q |
| |
|
||||| || |||||||||||||| ||||| || || || | ||||||| |||||||||||| |||||||| || |||| ||||| |||||||| |||| |
|
|
| T |
49149805 |
tcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttacaattccataaaacagagaaagtggaagaagaaacacattgcataataagtt |
49149904 |
T |
 |
| Q |
259 |
tgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccac |
358 |
Q |
| |
|
|| |||||||||||| ||| |||| ||||| |||||||| |||||| ||||| || | ||||||||| || |||||||| || || ||||| ||| | |
|
|
| T |
49149905 |
tgatggtaatgtctgagaatccaaaatcatgcagacaattatgaagaaagtcccagttgacattatcaaaagctttttcaaggtctagcttaaaagccgc |
49150004 |
T |
 |
| Q |
359 |
aaaccctttcttctttt----tggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactact |
454 |
Q |
| |
|
| | ||| || |||| | ||||||||||||| ||||||||||| |||||||||||||| |||||| | || ||||||||| | |||||||| || |
|
|
| T |
49150005 |
atattttttatttttttattttttatcttctcatgaaatgaacaatttcctgcaaaacaattgagttgtcattagtgcccctaccaggcagaaaactgct |
49150104 |
T |
 |
| Q |
455 |
ttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcga |
554 |
Q |
| |
|
| |||||||| || |||| |||||| | ||| |||||| |||||||||||||||||||||| || ||||| |||| ||||||||| | ||||||| | |
|
|
| T |
49150105 |
ctaatagggaccgattataatattaaggagcggcctgagacggtgaaccaagactttggtgataagcttgtaaacaacattgcaaaggttgatgggtcta |
49150204 |
T |
 |
| Q |
555 |
aagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaa |
654 |
Q |
| |
|
|||||||| | || ||||||| || |||| |||||||| |||| |||||||||||| ||| ||| ||||||| || ||||| ||||| || | |
|
|
| T |
49150205 |
aagtctttgtaggtattgggaggttcggttttaggaatgagagcaacgagggtgtcagaaattccaggatcaaaggcgcctgtttgaaaagccaaatgca |
49150304 |
T |
 |
| Q |
655 |
ccatatggaaaatatcatctccaataatgtgc |
686 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |
|
|
| T |
49150305 |
acatattgaaaatatcatcttcaataatgtgc |
49150336 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 609
Target Start/End: Original strand, 17718539 - 17718847
Alignment:
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
|||||||||||||||| | ||||||||| || || ||||| || || || || |||||| | ||||| ||||| || |||||||||||| | |||| || |
|
|
| T |
17718539 |
taagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgat |
17718638 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
||| ||||||||||| || || |||| |||||||||||| | ||||| || |||||||| || ||||||||| |||||| || |||||||| | ||| |
|
|
| T |
17718639 |
ttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctga |
17718738 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa |
600 |
Q |
| |
|
||||||||||| || |||| |||||| |||||||| || | ||||| || | ||||||||| |||| || ||||| || | ||| ||||| || |||| |
|
|
| T |
17718739 |
accaagactttagtaatgattttgtagacaatgttacacaaactaattggcctaaagtctttgtatgtggtcggaggatccactttaggaataagtgcaa |
17718838 |
T |
 |
| Q |
601 |
tgagggtgt |
609 |
Q |
| |
|
|||| |||| |
|
|
| T |
17718839 |
tgagcgtgt |
17718847 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 301 - 609
Target Start/End: Original strand, 19019768 - 19020076
Alignment:
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
|||||||||||||||| | ||||||||| || || ||||| || || || || |||||| | ||||| ||||| || |||||||||||| | |||| || |
|
|
| T |
19019768 |
taagaaaatcccaattgacattatcaaaggctttctcaaggtctagcttgaaagccacataaccttttttcttcttagatcttctcatgtaatgaatgat |
19019867 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
||| ||||||||||| || || |||| |||||||||||| | ||||| || |||||||| || ||||||||| |||||| || |||||||| | ||| |
|
|
| T |
19019868 |
ttcctgcaaaacaatggagttatcagaagttcccctaccaggcagaaagctgctttggtaagggccaataatattattaaggataggtctgagccgctga |
19019967 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaa |
600 |
Q |
| |
|
||||||||||| || |||| |||||| |||||||| || | ||||| || | ||||||||| |||| || ||||| || | ||| ||||| || |||| |
|
|
| T |
19019968 |
accaagactttagtaatgattttgtagacaatgttacacaaactaattggcctaaagtctttgtatgtggtcggaggatccactttaggaataagtgcaa |
19020067 |
T |
 |
| Q |
601 |
tgagggtgt |
609 |
Q |
| |
|
|||| |||| |
|
|
| T |
19020068 |
tgagcgtgt |
19020076 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 240 - 538
Target Start/End: Original strand, 53608420 - 53608718
Alignment:
| Q |
240 |
acacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaa |
339 |
Q |
| |
|
||||| ||||| ||||| ||| |||| ||||||||||| |||| || ||||| ||| |||||||||||||||| | ||||||||| || || |||| |
|
|
| T |
53608420 |
acacaatgcatgatgagcttgatggtgatgtctgggaaaccaaaatcctgtaggcaaaaattaagaaaatcccaattgacattatcaaaagctttctcaa |
53608519 |
T |
 |
| Q |
340 |
gatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctacc |
439 |
Q |
| |
|
|||| || || || |||||| | ||||| ||||| || |||||| |||| | |||| |||||| ||||||||||| || || |||| ||||||||||| |
|
|
| T |
53608520 |
gatcgagcttgaaagccacatagccttttttcttctttgatcttttcatataatgaataatttcctgcaaaacaatggagttatcagaagttcccctacc |
53608619 |
T |
 |
| Q |
440 |
atgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca |
538 |
Q |
| |
|
| | ||||| || |||||| | || ||||||||| |||||| || || || ||| | |||||||| ||||| || || | ||| || ||||||||||| |
|
|
| T |
53608620 |
aggcagaaagctgctttggcaagggccaataatattattaaggataggcctaagacgctgaaccaaaactttagtaataattttatagacaatgttgca |
53608718 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 372 - 499
Target Start/End: Original strand, 38647434 - 38647561
Alignment:
| Q |
372 |
tttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa |
471 |
Q |
| |
|
||||||||| |||||||||| || |||||||| ||||||||||||||||| |||| |||||| |||||| | |||||| | ||||| ||| | ||||||| |
|
|
| T |
38647434 |
tttttggattttctcatgaaatgtacaatttcctgcaaaacaattgaattatcagatgttcctctaccaggcagaaaaatgctttgatagaggccaataa |
38647533 |
T |
 |
| Q |
472 |
taacattaagaatcggtctgagatggtg |
499 |
Q |
| |
|
|| ||| ||||| ||||||||| |||| |
|
|
| T |
38647534 |
tattattgagaataggtctgagacggtg |
38647561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 485 - 595
Target Start/End: Complemental strand, 24731155 - 24731045
Alignment:
| Q |
485 |
cggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaatt |
584 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| || || |||||||| || || |||||||| | || ||||||||| | || | ||||||||| ||| |
|
|
| T |
24731155 |
cggtctgagacggtgaaccaagactttggtgataagcttatacacaatattacacaggctaatcgatctaaagtctttgtaggtggagggagggtcgatt |
24731056 |
T |
 |
| Q |
585 |
ttgggaatgag |
595 |
Q |
| |
|
||||||||||| |
|
|
| T |
24731055 |
ttgggaatgag |
24731045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 201 - 473
Target Start/End: Original strand, 11889820 - 11890092
Alignment:
| Q |
201 |
ttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttg |
300 |
Q |
| |
|
||||| |||||||||| | |||||||| ||||| |||||||||||||| ||||| || ||||||| |||||||| |||||||||| || ||| |
|
|
| T |
11889820 |
ttgttcccattccataggatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatggaggcaagcac |
11889919 |
T |
 |
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
| | |||||||| || | ||||||||| || || || || || ||||| || || ||| | ||||||||||| || ||||| ||| ||||| ||||| |
|
|
| T |
11889920 |
ttaagaaatcccagttgacattatcaaaagctttctctaggtcaagtttgaaagctacatagcctttcttcttcttagatctctacataaagtgtacaat |
11890019 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata |
473 |
Q |
| |
|
||| ||||||||||| | ||||||| || |||||||| | || || || |||||||||||||| |||||| |
|
|
| T |
11890020 |
ttcctgcaaaacaatagtgttgtcagccgtgcccctacctggcaggaagctgctttggtagggacctataata |
11890092 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 360 - 483
Target Start/End: Original strand, 15473687 - 15473808
Alignment:
| Q |
360 |
aaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggt |
459 |
Q |
| |
|
|||||||| ||| ||||||||||| |||| || || |||||||| |||||||||||||| || |||| || ||| ||||| | |||||||||||||| | |
|
|
| T |
15473687 |
aacccttt-ttccttttggatcttttcataaaatgtacaatttcctgcaaaacaattgagttatcagaagtaccc-taccaggcagaaaactactttgat |
15473784 |
T |
 |
| Q |
460 |
agggaccaataataacattaagaa |
483 |
Q |
| |
|
|||| ||||||||| |||||||| |
|
|
| T |
15473785 |
aggggccaataatattattaagaa |
15473808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 363 - 678
Target Start/End: Complemental strand, 23424405 - 23424090
Alignment:
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
||||||||| | || ||| | ||||||||||||| |||||| |||||||||||||| || |||| |||||||||| | | ||||| || |||||| | | |
|
|
| T |
23424405 |
cctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctactaggcagaaatctgctttggcaag |
23424306 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
| ||||||| | | | || || ||||||||| | || || | ||||| ||||| | ||||| | |||||||| || || ||||||| ||| ||||| |
|
|
| T |
23424305 |
ggccaataagattactgaggataggtctgagacgatgcacaagaactttagtgataatcttgtagattatgttgcatagacttatgggtctaaaatcttt |
23424206 |
T |
 |
| Q |
563 |
aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg |
662 |
Q |
| |
|
| || ||||| | || ||||| |||||||| |||||||| |||| || || | || |||||| |||| |||||||| || || || ||||||||| |
|
|
| T |
23424205 |
gtaagtggtgggggtttcgatttttggaatgagtgcaatgagagtgtttgaaatctccggatcaaagttacctgtttggaaggctttatggaccatatgg |
23424106 |
T |
 |
| Q |
663 |
aaaatatcatctccaa |
678 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
23424105 |
aagatgtcatctccaa |
23424090 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 225; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 63 - 687
Target Start/End: Complemental strand, 39012734 - 39012110
Alignment:
| Q |
63 |
atacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcac |
162 |
Q |
| |
|
||||||||||| ||||| || ||||| |||| |||| || ||||| || ||||| ||||||||||| | |||||| || || | |||||| || || | |
|
|
| T |
39012734 |
atacggattggctcccatctcctttggttgactgcatcatttatggcaatggagagtttttccatacataggatgaacaggtagggagagagcggatcgc |
39012635 |
T |
 |
| Q |
163 |
cctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgtt |
262 |
Q |
| |
|
| || |||||||||||||| |||||||| | |||||||| || |||||||| ||||| ||||| || || || | |||||| ||||| ||||||||| | |
|
|
| T |
39012634 |
cttgacgaagaccatgagtaggcttaaaattaggaagcttattgccattccacaaaacagagaaggtggaggatgagacacaatgcatgatgagtttgat |
39012535 |
T |
 |
| Q |
263 |
ggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaac |
362 |
Q |
| |
|
||||||||| ||||| | || ||||| ||||| || ||||| | |||||| | ||||||||| || ||||||||||| ||||| || |||||| || |
|
|
| T |
39012534 |
ggtaatgtcagggaaaccgaaatcatgcagacagttatggagaaacttccaattaacattatcaaaggctttttcaagatctagtttgaaagccacatac |
39012435 |
T |
 |
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
|||||||||||||||| | | ||||||||||| || ||||| ||||||||||| ||||||||||| || ||||||||| |||||||||||||||| |||| |
|
|
| T |
39012434 |
cctttcttctttttggttttcctcatgaagtgtactatttcctgcaaaacaatcgaattgtcagtggtgcccctaccaggtagaaaactactttgatagg |
39012335 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
| ||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||||| |||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
39012334 |
ggccaatgataacattaagaattggtctgaggcggtgaaccaagactttagtgatgagtttgtaagcaatattgcagaggctaatgggtctaaagtcttt |
39012235 |
T |
 |
| Q |
563 |
aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatgg |
662 |
Q |
| |
|
||| || |||| ||||| | ||||||||||||| ||||||||| ||||| || || || |||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
39012234 |
aaaagtgctgggggggtcggtcttgggaatgagggaaatgagggtatcagagatgtttggatcaaaggtaccagtttggaaagcagattggaccatatga |
39012135 |
T |
 |
| Q |
663 |
aaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
39012134 |
aaaatgtcatctccaataatgtgcc |
39012110 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 207 - 420
Target Start/End: Original strand, 1487402 - 1487615
Alignment:
| Q |
207 |
ccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaa |
306 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||||||||||||| || || ||||||| || ||||| |||| ||||| |||||||| ||| | |
|
|
| T |
1487402 |
ccattccataaaatagagaaagtggatgaagtaacacagtgcataataagcttaatggtaatatcagggaaaccaaaatcatgaagacaattatcaagga |
1487501 |
T |
 |
| Q |
307 |
aatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtg |
406 |
Q |
| |
|
| || || || | ||||||||| || || || ||||| |||||||| |||||| | |||||||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
1487502 |
attctcatttgacattatcaaaagctttctcgagatcaagtttaaaagccacatagcctttcttctttttggatattctcatgaagtgaacaatttcctg |
1487601 |
T |
 |
| Q |
407 |
caaaacaattgaat |
420 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
1487602 |
caaaacaattgaat |
1487615 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 348 - 616
Target Start/End: Complemental strand, 26791240 - 26790972
Alignment:
| Q |
348 |
ttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaa |
447 |
Q |
| |
|
||||| ||||| ||||||||||||| || ||| | | |||| |||||| || ||| ||||||||||| | ||||||||| || | ||||||| | || | |
|
|
| T |
26791240 |
ttaaaagccacgtaccctttcttcttcttagatatgcgcatgtagtgaataacttcctgcaaaacaatggcattgtcagtggtgctcctaccaggcagga |
26791141 |
T |
 |
| Q |
448 |
aactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaat |
547 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| || |||||||| | || || | |||||| ||||| | |||||| | ||||| ||||||||||| |
|
|
| T |
26791140 |
aactactttggtaaggaccaataatattattaaggataggtctgaggcgatggacaaggactttagtgataattttgtagatgatgttacaaaggctaat |
26791041 |
T |
 |
| Q |
548 |
gggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatat |
616 |
Q |
| |
|
||||| |||||||||| | ||| |||||||||| ||||||||||||||| |||||||| |||||||| |
|
|
| T |
26791040 |
gggtctaaagtctttataggttaaaggagggtcaactttgggaatgagggctatgagggtatcagatat |
26790972 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 201 - 526
Target Start/End: Complemental strand, 177565 - 177240
Alignment:
| Q |
201 |
ttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttg |
300 |
Q |
| |
|
||||| |||||||| | ||| ||||| || || ||||||||||| ||||| ||||||||| | ||| || ||||| |||| || || ||||| | |
|
|
| T |
177565 |
ttgtttccattccaaagaacagagaatgttgaagaagtgacacaatgcatgatgagtttgattgtatcatccgggaaaccaaaatcttggagacacgatc |
177466 |
T |
 |
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
||||||| |||||||| | ||| ||||| || || |||||||| ||||| || || || | ||||| ||| |||| ||||| | ||| || |||||||| |
|
|
| T |
177465 |
taagaaactcccaattcacattgtcaaaagctttctcaagatcaagtttgaaagcaacgtaaccttttttcctttttgatctccgcataaaatgaacaat |
177366 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
||| ||||||||||| || ||||||| || |||||||| || || ||||| ||||||||||||||||||||| ||||||||||||| | |||| | || |
|
|
| T |
177365 |
ttcctgcaaaacaatagagttgtcagaagtgcccctaccttgcaggaaactgctttggtagggaccaataatatcattaagaatcggccggagacgatgc |
177266 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgta |
526 |
Q |
| |
|
|| | ||||||||| |||| |||||| |
|
|
| T |
177265 |
acaatgactttggtaatgattttgta |
177240 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 113 - 609
Target Start/End: Complemental strand, 40328332 - 40327836
Alignment:
| Q |
113 |
agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc |
212 |
Q |
| |
|
|||||| ||||||||||| | |||||| ||||||| ||| | |||||||| || ||||| |||||||| ||||| || | | ||||||||| |||||| |
|
|
| T |
40328332 |
agagagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagaaagcttgtttccattc |
40328233 |
T |
 |
| Q |
213 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc |
312 |
Q |
| |
|
||||||| |||| | | | ||| || ||||| ||||| ||||||||| ||||||||||||||||| | || || || || ||| | ||| || |||| |
|
|
| T |
40328232 |
cataaaattgagtagctcggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaattccc |
40328133 |
T |
 |
| Q |
313 |
aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac |
412 |
Q |
| |
|
| || | || ||||| || || || | ||| || || || || ||||| || |||||| |||| || | |||| ||||| | ||||| |||||||| |
|
|
| T |
40328132 |
agttgacgttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaac |
40328033 |
T |
 |
| Q |
413 |
aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg |
512 |
Q |
| |
|
||| || ||||| | || ||||||||| | | ||||||||||||||||||||||||||| | | ||||| || || || | |||||||| || || |
|
|
| T |
40328032 |
aatggagttgtctgaggtacccctaccaggaaaaaaactactttggtagggaccaataatgttagtgagaataggccttagccgatgaaccaataccttt |
40327933 |
T |
 |
| Q |
513 |
gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt |
609 |
Q |
| |
|
||||| | |||||| | ||||||||||||||||||||||| || ||||| | || ||||| || |||||||| |||||||| |||||||| |||| |
|
|
| T |
40327932 |
gtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgcaatgagagtgt |
40327836 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 320 - 473
Target Start/End: Original strand, 42403417 - 42403570
Alignment:
| Q |
320 |
attatcaaatgccttttcaagatccagtttaaaggccaca-aaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattga |
418 |
Q |
| |
|
||||||||| || ||||| || || || || ||||||||| |||||||| ||| ||||||||||| |||| || || | |||||| |||||||||||||| |
|
|
| T |
42403417 |
attatcaaacgctttttccaggtcaagcttgaaggccacataacccttt-ttccttttggatcttttcataaaatgtataatttcctgcaaaacaattga |
42403515 |
T |
 |
| Q |
419 |
attgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata |
473 |
Q |
| |
|
||| |||| || ||||||||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
42403516 |
attatcagaagtacccctaccaggtagaaaactactttggcaggggccaataata |
42403570 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 361 - 490
Target Start/End: Complemental strand, 573098 - 572969
Alignment:
| Q |
361 |
accctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggta |
460 |
Q |
| |
|
|||| ||||||||||| ||| |||||||||| ||||||||||| |||||||||||||| || |||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
573098 |
accccttcttcttttttgattttctcatgaaatgaacaatttcctgcaaaacaattgagttatcagaagtttccctaccatgcagaaaactgctttggta |
572999 |
T |
 |
| Q |
461 |
gggaccaataataacattaagaatcggtct |
490 |
Q |
| |
|
|| || ||||| ||||||||| ||||| |
|
|
| T |
572998 |
agggccgataatgttattaagaataggtct |
572969 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 113 - 609
Target Start/End: Original strand, 35135212 - 35135708
Alignment:
| Q |
113 |
agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc |
212 |
Q |
| |
|
|||||| ||||||||||| | |||||| ||||||| ||| | |||||||| || ||||| |||||||| ||||| || | | |||||||| |||||| |
|
|
| T |
35135212 |
agagagtttttccatacataggatgaaaagataaggagacaacgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattc |
35135311 |
T |
 |
| Q |
213 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatccc |
312 |
Q |
| |
|
||||||| |||| | | | ||| || ||||| ||||| ||||||||| ||||||||||||||||| | || || || || ||| | ||| || |||| |
|
|
| T |
35135312 |
cataaaattgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaagccgaaatcctggaggcaaatgcgaaggaagtccc |
35135411 |
T |
 |
| Q |
313 |
aatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaac |
412 |
Q |
| |
|
| || | || ||||| || || || | ||| || || || || ||||| || |||||| |||| || | |||| ||||| | ||||| |||||||| |
|
|
| T |
35135412 |
agttgacgttgtcaaaagctttctctaaatcaagcttgaaagctacaaaacccttcttccttttagagcgcttcataaagtggattatttcctgcaaaac |
35135511 |
T |
 |
| Q |
413 |
aattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttg |
512 |
Q |
| |
|
||| || ||||| | || ||||||||| | | |||||| ||||||||||||| |||||| | | ||||| || || || | |||||||| || || |
|
|
| T |
35135512 |
aatggagttgtctgaggtacccctaccaggcaaaaaactgctttggtagggactaataatgttagtgagaataggccttagccgatgaaccaataccttt |
35135611 |
T |
 |
| Q |
513 |
gtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt |
609 |
Q |
| |
|
||||| | |||||| | |||||||||||||||||||||| || ||||| | || ||||| || |||||||| |||||||| |||||||| |||| |
|
|
| T |
35135612 |
gtgataattttgtaaataatgttgcaaaggctaatgggtatgaaatctttgtaagtagtgggtggttcaatttttggaatgagcgcaatgagagtgt |
35135708 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 113 - 278
Target Start/End: Original strand, 3779041 - 3779206
Alignment:
| Q |
113 |
agagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattc |
212 |
Q |
| |
|
|||||| ||||||||||| | |||||| ||||||| ||| || |||||||| || ||||| |||||||| ||||| || | | |||||||| |||||| |
|
|
| T |
3779041 |
agagagtttttccatacagaggatgaaaagataaggagacagcgggtcaccttgacgaagtccatgagtaggcttgaaaggagagagcttgtttccattc |
3779140 |
T |
 |
| Q |
213 |
cataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaag |
278 |
Q |
| |
|
||||| | |||| | | | ||| || ||||| ||||| ||||||||| ||||||||||||||||| |
|
|
| T |
3779141 |
cataacaatgagtagcttggtgaggtaacacaatgcatgatgagtttgatggtaatgtctgggaag |
3779206 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 363 - 562
Target Start/End: Original strand, 35063203 - 35063402
Alignment:
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
|||||||||||||| |||||||||||| | || | |||||| ||||||||||| | ||| || | |||||| |||| | | |||| | |||||||||| |
|
|
| T |
35063203 |
cctttcttctttttagatcttctcatgcaatggataatttcttgcaaaacaatggcattatctgaagttcccttacctggcaaaaaaatgctttggtagg |
35063302 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
| ||||||||| || ||| |||||||| || |||| || || |||||| | || | |||||| ||||| ||||||||||| || |||| ||| ||||| |
|
|
| T |
35063303 |
gtccaataatagtataaagcatcggtcttagtcggtggactaaaactttgataataactttgtagacaatattgcaaaggctgatcggtctaaaatcttt |
35063402 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 399 - 609
Target Start/End: Complemental strand, 19265284 - 19265074
Alignment:
| Q |
399 |
atttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggt |
498 |
Q |
| |
|
||||| ||||||||||| || ||||| || ||||||||| | | |||| | |||||||||||||||||||| | | ||||| || || || | | |
|
|
| T |
19265284 |
atttcctgcaaaacaatggagttgtcttgggtacccctaccaggcaaaaaattgctttggtagggaccaataatgttagtgagaataggccttagccgat |
19265185 |
T |
 |
| Q |
499 |
gaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggc |
598 |
Q |
| |
|
||||||| || || ||||| | |||||| | ||||||||||||||||||||||| || || || | || ||||| || |||||||| |||||||| || |
|
|
| T |
19265184 |
gaaccaatacctttgtgataattttgtaaataatgttgcaaaggctaatgggtctgaaatccttgtaagtagtgggtggttcaatttttggaatgagcgc |
19265085 |
T |
 |
| Q |
599 |
aatgagggtgt |
609 |
Q |
| |
|
|||||| |||| |
|
|
| T |
19265084 |
aatgagagtgt |
19265074 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 472
Target Start/End: Original strand, 14653942 - 14654029
Alignment:
| Q |
385 |
tcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataat |
472 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| || || || | || ||||||||| | |||||||| ||||| |||||||||||||| |
|
|
| T |
14653942 |
tcatgaaatgaataatttcctgcaaaacaatagagttatctgcagtgcccctaccaggcagaaaactgctttgatagggaccaataat |
14654029 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-107; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 18 - 687
Target Start/End: Original strand, 16769863 - 16770531
Alignment:
| Q |
18 |
tcatccgcgaaaaggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagaga |
117 |
Q |
| |
|
|||||||| |||||||| ||||| || | || || || | |||||| | ||| ||||||||| | | || ||||||| ||||||||||||| |||| |
|
|
| T |
16769863 |
tcatccgcaaaaaggagatgagaaaggtgtggtcctgtgttattgattctgataggttcccacttcccttaactgacaacattgttgatggctgctgaga |
16769962 |
T |
 |
| Q |
118 |
gcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataa |
217 |
Q |
| |
|
| |||||||||||||||||||||||||||| || ||||| ||||| || |||||||||||||| || || || || || | ||||||||||||||||| |
|
|
| T |
16769963 |
gtttttccatacacaagatgaagagataaggtgaaagaggatcaccttgtcgaagaccatgagtaggtttgaaatgcggcaatttgttaccattccataa |
16770062 |
T |
 |
| Q |
218 |
aactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaattt |
317 |
Q |
| |
|
|| |||||||| || |||| |||||||||||||| |||||| |||||||||||||||| |||| ||||| |||||||| ||||||||| || || |
|
|
| T |
16770063 |
aatagagaaagtggaagaagaaacacagtgcataataagtttgatggtaatgtctgggaatccaaaatcatgcagacaattatgaagaaaatctcagttg |
16770162 |
T |
 |
| Q |
318 |
atattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattg |
417 |
Q |
| |
|
| ||||||||| || |||||||| || || ||||| |||||| | |||| ||| ||||| ||||||||| ||| |||| |||||| ||||||||||||| |
|
|
| T |
16770163 |
acattatcaaaagctttttcaaggtcaagcttaaaagccacataacctt-cttttttttttatcttctcaagaaatgaaaaatttcctgcaaaacaattg |
16770261 |
T |
 |
| Q |
418 |
aattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgat |
517 |
Q |
| |
|
| |||||||| || ||||||||| | |||||||| || || || ||||||||||||| |||||| | ||||||||| ||| |||||||||||||||||| |
|
|
| T |
16770262 |
agttgtcagtagtgcccctaccaggcagaaaactgctctgataaggaccaataataatattaaggagtggtctgagacggttaaccaagactttggtgat |
16770361 |
T |
 |
| Q |
518 |
gagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatatt |
617 |
Q |
| |
|
|| ||||| |||| ||||||||||| ||||||| ||||||||| | || ||||| |||| |||| |||||||| |||| |||||||||||| ||| |
|
|
| T |
16770362 |
aagcttgtaaacaacattgcaaaggctgatgggtctaaagtctttgtaggtattgggaaggtcggttttaggaatgagagcaacgagggtgtcagaaatt |
16770461 |
T |
 |
| Q |
618 |
ttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
||| ||||||| ||| ||||||||||| || ||||||| |||||||||||||||||||||||||| |
|
|
| T |
16770462 |
ccaggatcaaaggcacctgtttggaaagccgaatgcaccatattgaaaatatcatctccaataatgtgcc |
16770531 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 72 - 608
Target Start/End: Original strand, 23207821 - 23208357
Alignment:
| Q |
72 |
ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa |
171 |
Q |
| |
|
|||||||| |||| |||||| |||||||| || || || ||||| ||||| ||||| || | ||||||||||||| |||||| |||||||| || | || |
|
|
| T |
23207821 |
ggttcccatcttccttgactcacagcattattaatagcaatagaaagcttctccatgcatagtatgaagagataaggagagagtgggtcaccttgtctaa |
23207920 |
T |
 |
| Q |
172 |
gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc |
271 |
Q |
| |
|
||||||| || ||||| || | || | |||||||| |||||||||| |||||| || || || ||||| || ||||| ||||||||| ||||||| || |
|
|
| T |
23207921 |
gaccatgtgtgggcttgaaagggggcattttgttaccgttccataaaattgagaatgtggaggaggtgacgcaatgcatgatgagtttgatggtaatatc |
23208020 |
T |
 |
| Q |
272 |
tgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttc |
371 |
Q |
| |
|
||| || |||| || || || ||| |||| |||||||| | | |||||| || || || || | || || || || || ||| | ||||||||| |
|
|
| T |
23208021 |
tggaaaaccaaaatcctggaggcaagaattaaggaaatcccatctgacattatcgaaagctttctccaagtctagcttgaaagcaacataacctttcttc |
23208120 |
T |
 |
| Q |
372 |
tttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataa |
471 |
Q |
| |
|
| || || | ||||| ||||||| |||||| |||||||||||||| ||||||| ||||||||||| | |||||||| |||||| | || ||||||| |
|
|
| T |
23208121 |
ctctttgacttcctcataaagtgaataatttcctgcaaaacaattgagttgtcagaagttcccctacctggcagaaaactgctttggcaagggccaataa |
23208220 |
T |
 |
| Q |
472 |
taacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgt |
571 |
Q |
| |
|
| | | ||||| ||||||||| | || || | ||||| ||||| | ||||| |||||||| || || ||||||| ||| ||||| |||| || |
|
|
| T |
23208221 |
gattactgagaataggtctgagacgatgcacaagaactttagtgataatcttgtaggttatgttgcagagactgatgggtctaaaatctttgtatgtggt |
23208320 |
T |
 |
| Q |
572 |
gggagggtcaattttgggaatgagggcaatgagggtg |
608 |
Q |
| |
|
||| ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
23208321 |
gggggggtcgattttaggaatgagtgcaatgagggtg |
23208357 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 117 - 473
Target Start/End: Original strand, 27781630 - 27781986
Alignment:
| Q |
117 |
agcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccata |
216 |
Q |
| |
|
||||| ||||| || | ||||||||| |||| || ||||||||||| || | || ||||||||||||||||| | || | ||||| || ||||||| |
|
|
| T |
27781630 |
agcttctccatgcagaggatgaagaggtaaggtgaaagagggtcaccttgtctgaggccatgagttggcttaaatggaggcattttgttcccgttccata |
27781729 |
T |
 |
| Q |
217 |
aaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatt |
316 |
Q |
| |
|
|| |||||||| ||||| |||||||||||||| ||||| || ||||||| |||||||| |||||||||| || ||| | | ||||||||||| |
|
|
| T |
27781730 |
gaatggagaaagtggatgaggtgacacagtgcatgatgagctttatggtaatatctgggaaaccaaagtcatgaaggcaagcacttaagaaatcccaatt |
27781829 |
T |
 |
| Q |
317 |
tatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaatt |
416 |
Q |
| |
|
| ||||||||| || || || || || ||||| || || ||| | ||||||||||| || ||||| | ||| ||||| |||||||| | ||||||||| |
|
|
| T |
27781830 |
gacattatcaaaagctttctctaggtcaagtttgaaagctacacaacctttcttcttcttagatctccgcataaagtgtacaatttcctacaaaacaata |
27781929 |
T |
 |
| Q |
417 |
gaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata |
473 |
Q |
| |
|
|| ||||||| || |||||||| | || || || ||||| |||||||| |||||| |
|
|
| T |
27781930 |
gagttgtcagccgtgcccctacctggcaggaagctgctttgatagggacctataata |
27781986 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 386 - 613
Target Start/End: Original strand, 1579428 - 1579655
Alignment:
| Q |
386 |
catgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatc |
485 |
Q |
| |
|
|||||||||| ||||| | |||||||||||| |||||||| | ||||||| | | |||||||| ||||| ||||||||||||||| ||||||| |
|
|
| T |
1579428 |
catgaagtgagttatttccttcaaaacaattgagttgtcagtagcgcccctactaggcagaaaactgctttgatagggaccaataatattgctaagaata |
1579527 |
T |
 |
| Q |
486 |
ggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattt |
585 |
Q |
| |
|
||||| || | ||||| | |||||||||||||| |||||| | || ||||| ||||||||||| ||||||||||| | || ||||||||||| | |
|
|
| T |
1579528 |
ggtctcagtcgatgaacaaggactttggtgatgattttgtagatgatattgcataggctaatggggcgaaagtctttgtaagtggtgggagggtccgcct |
1579627 |
T |
 |
| Q |
586 |
tgggaatgagggcaatgagggtgtcaga |
613 |
Q |
| |
|
|||| |||||||| || || |||||||| |
|
|
| T |
1579628 |
tgggtatgagggctataagagtgtcaga |
1579655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 2e-88; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 59 - 687
Target Start/End: Complemental strand, 23465560 - 23464920
Alignment:
| Q |
59 |
attgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagaga--gag |
156 |
Q |
| |
|
|||||| | ||| ||||||||| | |||||| ||||| ||||||||||||| | ||||| |||||||||||||||||||||||||||| | || ||| |
|
|
| T |
23465560 |
attgattctgataggttcccacttcctttgattgacaacattgttgatggctactgagagtttttccatacacaagatgaagagataaggtgtgaaagag |
23465461 |
T |
 |
| Q |
157 |
ggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgag |
256 |
Q |
| |
|
| ||||| || |||||||||||||| ||||| || || || | |||||||||||||||||||| |||||||| || |||| | |||||||||||| || |
|
|
| T |
23465460 |
gatcaccttgtcgaagaccatgagtaggcttgaaatgcggcaatttgttaccattccataaaacagagaaagtggaagaagaaatacagtgcataataag |
23465361 |
T |
 |
| Q |
257 |
tttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggcc |
356 |
Q |
| |
|
|||| | ||||||| |||||| |||| ||||| ||||| || ||||||||||| || | ||||||||| || |||||||| || || ||||| ||| |
|
|
| T |
23465360 |
tttgatagtaatgtttgggaatccaaaatcatgcagacacttatgaagaaaatccctgttgacattatcaaaagctttttcaaggtctagcttaaaagcc |
23465261 |
T |
 |
| Q |
357 |
acaaaccctttcttctt---------tttggatcttctcatgaagtgaacaatttcgtgcaaaacaat-tgaattgtcagttgttcccctaccatgtaga |
446 |
Q |
| |
|
||| | ||||| || || ||| ||||| ||||||| ||||||||||| | ||||| || ||| |||||||| || ||||||||| | ||| |
|
|
| T |
23465260 |
acataacctttttttttattttttattttttatcttttcatgaaatgaacaatttcctccaaaaaaaaatgagttgtcagtagtgcccctaccaggcaga |
23465161 |
T |
 |
| Q |
447 |
aaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaa |
546 |
Q |
| |
|
||||| || || |||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||||| || ||||| |||| ||||||||||| | |
|
|
| T |
23465160 |
aaactgctctgatagggaccaataataatattaagaagcggcctgagacggtgaaccaagactttggtgataagcttgtaaacaacattgcaaaggctga |
23465061 |
T |
 |
| Q |
547 |
tgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagc |
646 |
Q |
| |
|
|||||| ||||||||| | || |||||||||| |||| |||||||| | ||||||||||||| | |||| ||| ||||||| ||| ||||||||||| |
|
|
| T |
23465060 |
tgggtctaaagtctttgtaggtattgggagggtcggttttaggaatgagagaaatgagggtgtcaaaaatttcaggatcaaaggcacctgtttggaaagc |
23464961 |
T |
 |
| Q |
647 |
attttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
|| ||||||| |||||||||||||||| ||||||||| |
|
|
| T |
23464960 |
caaatgcaccatattgaaaatatcatctccagtaatgtgcc |
23464920 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 307 - 604
Target Start/End: Complemental strand, 1524930 - 1524633
Alignment:
| Q |
307 |
aatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtg |
406 |
Q |
| |
|
||||||| || | ||||||||| || || || ||||| |||||||| || ||| | ||||| |||||||| ||| ||||||||||||| |||||||| || |
|
|
| T |
1524930 |
aatcccagttaacattatcaaaagctttctctagatctagtttaaaagctacacaaccttttttcttttttgattttctcatgaagtggacaatttcctg |
1524831 |
T |
 |
| Q |
407 |
caaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaag |
506 |
Q |
| |
|
||||||||| ||||| |||| |||||||||||| | |||||||||||||| ||||| ||||||||| ||| ||||||||||| || | |||||| |
|
|
| T |
1524830 |
caaaacaatagaattatcagaagttcccctaccaggcagaaaactactttgataggggccaataatattatttagaatcggtctcagtctattaaccaaa |
1524731 |
T |
 |
| Q |
507 |
actttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctt--taaatgttgtgggagggtcaattttgggaatgagggcaatgag |
604 |
Q |
| |
|
||||||||||| | ||| || ||||||||||| | || ||||||| ||| |||| ||||||| | |||| |||||| ||||||||||| |||||||| |
|
|
| T |
1524730 |
actttggtgataattttataaacaatgttgcacatactgatgggtctaaaatctttgtaaatgt--taggagtgtcaatcttgggaatgagtgcaatgag |
1524633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 96 - 604
Target Start/End: Complemental strand, 50452069 - 50451561
Alignment:
| Q |
96 |
gcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtg |
195 |
Q |
| |
|
|||||||| || || ||||| ||||| |||||||| | |||||||| |||| ||| || || ||||| || || || ||||| || || || || || | |
|
|
| T |
50452069 |
gcattgttaatagcaatagatagcttctccatacaaagaatgaagaggtaaggagaaagcggatcaccttgtcggaggccatgtgtaggtttgaaatgcg |
50451970 |
T |
 |
| Q |
196 |
gaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagaca |
295 |
Q |
| |
|
| | ||||||||||||||||| | |||||||| || || |||||||| ||||| || |||||| |||| ||||| || || |||| ||||| || || |
|
|
| T |
50451969 |
gcattttgttaccattccataagatagagaaagtggaggaggtgacacaatgcatgataagtttgatggtgatgtccggaaaaccaaactcatgaaggca |
50451870 |
T |
 |
| Q |
296 |
atttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtga |
395 |
Q |
| |
|
| ||||||||||||| || | |||||||||||| ||||| | ||| || || || || ||| | ||||| ||||| || || | ||||| || ||| |
|
|
| T |
50451869 |
agaattaagaaaatcccatttgacattatcaaatgctttttccaaatcgagcttgaaagcaacataaccttttttcttcttagacttcctcataaaatga |
50451770 |
T |
 |
| Q |
396 |
acaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagat |
495 |
Q |
| |
|
| |||||| ||||||||||| || || |||| |||||||||| | | ||||| || |||||||| || ||||||| | ||| || || ||||| ||| |
|
|
| T |
50451769 |
ataatttcctgcaaaacaatagagttatcagaagttcccctactaggcagaaagctgctttggtaagggccaataagattattgagtataggtctaagac |
50451670 |
T |
 |
| Q |
496 |
ggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgag |
595 |
Q |
| |
|
| || || | |||||| ||||| | ||||| | || ||||||||||| || |||| |||||||||||| || ||||| |||||| ||||||||||||| |
|
|
| T |
50451669 |
gatgcacaaggactttagtgataatcttgtagattatattgcaaaggctgataggtctaaagtctttaaaggtagtgggggggtcagttttgggaatgag |
50451570 |
T |
 |
| Q |
596 |
ggcaatgag |
604 |
Q |
| |
|
|||||||| |
|
|
| T |
50451569 |
tgcaatgag |
50451561 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 301 - 473
Target Start/End: Original strand, 31325133 - 31325305
Alignment:
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
|||| ||||||||||| | ||||||||| || || || || || ||||| || || || | || |||||||| |||||||||||||||||||| ||||| |
|
|
| T |
31325133 |
taaggaaatcccaattgacattatcaaaagctttctccaggtcaagtttgaaagctacgtaacccttcttcttcttggatcttctcatgaagtggacaat |
31325232 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataata |
473 |
Q |
| |
|
||| |||||||||||||| || |||| |||||||||||| | |||||||| ||| ||||||| ||||||||| |
|
|
| T |
31325233 |
ttcctgcaaaacaattgagttatcagaagttcccctaccaggcagaaaactgcttcggtaggggccaataata |
31325305 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 239 - 609
Target Start/End: Original strand, 50236684 - 50237054
Alignment:
| Q |
239 |
gacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttca |
338 |
Q |
| |
|
|||||| ||||| ||||||||| |||| ||||| || || |||| ||||| |||||| | || || ||| |||| | ||||||||| |||||||| |
|
|
| T |
50236684 |
gacacaatgcatgatgagtttggtggtgatgtccggaaatccaaaatcatggagacaagaattgaggaagtcctaattaacattatcaaaagccttttcc |
50236783 |
T |
 |
| Q |
339 |
agatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctac |
438 |
Q |
| |
|
| ||| || ||||| || ||| | || ||||| ||||| ||||||||||||| ||||||||||| ||||||||||| || || |||| ||| ||||||| |
|
|
| T |
50236784 |
aaatcaagcttaaaagctacatagcccttctttcttttgaatcttctcatgaaatgaacaatttcctgcaaaacaatcgagttatcagatgtacccctac |
50236883 |
T |
 |
| Q |
439 |
catgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca |
538 |
Q |
| |
|
|| | |||||| | ||||| ||||||||||||||| |||||| || || | ||| | || ||||| ||||| ||||| | ||||| |||||||| || |
|
|
| T |
50236884 |
caggcagaaaaatgctttgatagggaccaataatattattaaggatgggccgaagacgatgcaccaaaactttagtgataatcttgtagacaatgttaca |
50236983 |
T |
 |
| Q |
539 |
aaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt |
609 |
Q |
| |
|
|||||| || | | ||||||||| | || | ||| | |||||||| |||||||| |||||||| |||| |
|
|
| T |
50236984 |
aaggctgatagacctaaagtctttgtaggtggcgggcagatcaattttaggaatgagtgcaatgagtgtgt |
50237054 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 345 - 494
Target Start/End: Complemental strand, 43298283 - 43298134
Alignment:
| Q |
345 |
agtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgta |
444 |
Q |
| |
|
||||| ||||| ||| | || ||||||||||| ||||||||||| || ||||| ||||| |||||||||||||| || |||| |||||||||| | | | |
|
|
| T |
43298283 |
agtttgaaggctacatatcccttcttctttttagatcttctcataaaatgaactatttcctgcaaaacaattgagttatcagaagttcccctactaggca |
43298184 |
T |
 |
| Q |
445 |
gaaaactactttggtagggaccaataataacattaagaatcggtctgaga |
494 |
Q |
| |
|
||||||| |||||||| || ||||||| | ||| ||||| ||||||||| |
|
|
| T |
43298183 |
gaaaactgctttggtaagggccaataagattattgagaataggtctgaga |
43298134 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 398 - 462
Target Start/End: Original strand, 10103958 - 10104022
Alignment:
| Q |
398 |
aatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
|||||| |||||||||||||| || |||| |||||||||||| | ||||| |||||||| |||| |
|
|
| T |
10103958 |
aatttcctgcaaaacaattgagttatcagccgttcccctaccaggcagaaagctactttgatagg |
10104022 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 1e-80; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 311 - 687
Target Start/End: Original strand, 13027606 - 13027980
Alignment:
| Q |
311 |
ccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaa |
410 |
Q |
| |
|
|||||| | ||||||||| | ||||||||||||||||| || |||||| |||||||||||||||||| | | ||||||||||| || ||||| || ||| |
|
|
| T |
13027606 |
ccaattaacattatcaaagtctttttcaagatccagtttgaaagccacataccctttcttctttttggttttcctcatgaagtgtactatttcctgtaaa |
13027705 |
T |
 |
| Q |
411 |
acaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactt |
510 |
Q |
| |
|
||||| ||||||||| | || ||||||||| |||||||||||||||| ||||| ||||| |||||||||||||| |||||||| | |||||||||||||| |
|
|
| T |
13027706 |
acaatcgaattgtcaatggtgcccctaccaggtagaaaactactttgataggggccaatgataacattaagaattggtctgaggttgtgaaccaagactt |
13027805 |
T |
 |
| Q |
511 |
tggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtc |
610 |
Q |
| |
|
| |||||||||||||| |||| ||||| |||||||| ||| |||||||||||| || |||| ||||| | ||||||||||||| |||||| || || |
|
|
| T |
13027806 |
tagtgatgagtttgtaagcaatattgcagaggctaat-ggtttaaagtctttaaaagtgatggg-gggtcggtcttgggaatgagggaaatgagagtatc |
13027903 |
T |
 |
| Q |
611 |
agatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaataatgtgcc |
687 |
Q |
| |
|
||| || || || ||||| |||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13027904 |
agagatgtttggatcaaaagtaccagtttggaaagcagattggaccatatgaaaaatgtcatctccaataatgtgcc |
13027980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 200 - 561
Target Start/End: Complemental strand, 35233556 - 35233195
Alignment:
| Q |
200 |
cttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaattt |
299 |
Q |
| |
|
|||||| ||||||||||||| || ||||||||| ||| |||||||||||||| | ||| |||| |||| ||||| | |||||||| || ||||| |
|
|
| T |
35233556 |
cttgtttccattccataaaatagaaaaagtagataaagaaacacagtgcataataaacttgatggtgatgttagggaaaccgaagtcatgaaggcaatta |
35233457 |
T |
 |
| Q |
300 |
gtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaa |
399 |
Q |
| |
|
||||||| ||||| || | ||| ||||| || || || ||||| ||||| || || ||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
35233456 |
ctaagaaactcccagttgacattgtcaaaagctttctctagatcaagtttgaaagctacataccctttcttctttttggattttctcatgaagtgaacaa |
35233357 |
T |
 |
| Q |
400 |
tttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtg |
499 |
Q |
| |
|
|||| | |||||||||||| ||||||| || ||||||||| |||||||| ||||| ||||| ||||||||| ||| | |||||||||||| |||| |
|
|
| T |
35233356 |
tttccttcaaaacaattgagttgtcagaggtgcccctaccagacagaaaactgctttgataggggccaataatattatttaagatcggtctgagacggtg |
35233257 |
T |
 |
| Q |
500 |
aaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctt |
561 |
Q |
| |
|
|||||||||||| || | ||| |||||||| |||||||| ||||| || |||| ||||||| |
|
|
| T |
35233256 |
aaccaagactttagtaaggagcttgtacactatgttgcacaggctgattggtctgaagtctt |
35233195 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 379 - 687
Target Start/End: Complemental strand, 13599475 - 13599167
Alignment:
| Q |
379 |
atcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacatt |
478 |
Q |
| |
|
||||||||||||| || |||||||| ||||||||||||||||||||||| || ||| || || || ||||| ||||||| ||||| |||||||||||||| |
|
|
| T |
13599475 |
atcttctcatgaaatgtacaatttcctgcaaaacaattgaattgtcagtggtgcccttatcaggttgaaaaatactttgataggggccaataataacatt |
13599376 |
T |
 |
| Q |
479 |
aagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaatgttgtgggaggg |
578 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||| || ||||| |||||||| || ||||| || |||| || |||||| | || | ||||| |
|
|
| T |
13599375 |
aagaatgggtatgagacggtgaaccaagactttggtgataagcttgtatacaatgttacacaggctgataggtctaacgtctttgtaggtgtttggagga |
13599276 |
T |
 |
| Q |
579 |
tcaattttgggaatgagggcaatgagggtgtcagatattttagggtcaaaggtaccagtttggaaagcattttgaaccatatggaaaatatcatctccaa |
678 |
Q |
| |
|
||||||||||| ||||||| |||||| || | || || |||| ||||||||||| ||||||| || || |||||||| |||||||||| |||| |
|
|
| T |
13599275 |
tcaattttgggtatgagggaaatgagagtatttgaaatactaggatcaaaggtacctttttggaaggctgactgcaccatatgagaaatatcatccccaa |
13599176 |
T |
 |
| Q |
679 |
taatgtgcc |
687 |
Q |
| |
|
||||||||| |
|
|
| T |
13599175 |
taatgtgcc |
13599167 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 366 - 603
Target Start/End: Original strand, 11297048 - 11297285
Alignment:
| Q |
366 |
ttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggac |
465 |
Q |
| |
|
|||||| |||| |||||| |||||||||| | |||||||||||||||||||| || |||| || || |||||| | |||||||| ||||| |||| || |
|
|
| T |
11297048 |
ttcttccttttagatcttatcatgaagtggatgatttcgtgcaaaacaattgagttatcagaagtaccactaccaggcagaaaactgctttgataggaac |
11297147 |
T |
 |
| Q |
466 |
caataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtctttaaa |
565 |
Q |
| |
|
|||||||| | ||||||| ||||||||| | || ||||| ||||| ||||| | |||||| | |||||||| || || ||||||| ||| ||||| | |
|
|
| T |
11297148 |
caataatattagtaagaataggtctgagacgatgcaccaaaacttttgtgataattttgtagattatgttgcagagactgatgggtctaaaatctttgta |
11297247 |
T |
 |
| Q |
566 |
tgttgtgggagggtcaattttgggaatgagggcaatga |
603 |
Q |
| |
|
||| | ||||| |||||||| |||||||| ||||||| |
|
|
| T |
11297248 |
tgtactaggaggatcaatttttggaatgagtgcaatga |
11297285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 311 - 552
Target Start/End: Original strand, 12646172 - 12646413
Alignment:
| Q |
311 |
ccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaa |
410 |
Q |
| |
|
|||||| | ||||||||| ||||||| ||| || || |||||||||||| | || ||||| || || |||||||||||| |||| ||||| |||||| |
|
|
| T |
12646172 |
ccaattgacattatcaaaagcctttttaaggtctagcttaaaggccacataacccttctttttctttgatcttctcatgtgatgaatgatttcctgcaaa |
12646271 |
T |
 |
| Q |
411 |
acaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactt |
510 |
Q |
| |
|
|||| ||||||||| || || |||||| | | |||||| ||||||||||| |||||||| | ||||||||||||||| | | || | ||||| |
|
|
| T |
12646272 |
acaacaacattgtcagtggtgcctctaccaggcaaaaaactgctttggtaggggtcaataatagtaacaagaatcggtctgaggcgaaggacaaggactt |
12646371 |
T |
 |
| Q |
511 |
tggtgatgagtttgtacacaatgttgcaaaggctaatgggtc |
552 |
Q |
| |
|
|||| |||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
12646372 |
tggtaatgattttgtagacaatgttgcaaaggctaatgggtc |
12646413 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 30 - 232
Target Start/End: Complemental strand, 13599823 - 13599621
Alignment:
| Q |
30 |
aggaggtgagagagatacggcccagtatcattgatacggattggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatac |
129 |
Q |
| |
|
||||| ||||| || | |||||| || | |||||| | ||| ||||||| | | |||||| | || |||||||||||||| || || |||||||||| |
|
|
| T |
13599823 |
aggagatgagataggtgcggccctgtgttattgattctgataggttcccccttcctttgatttactgcattgttgatggcagctgaaagtttttccatac |
13599724 |
T |
 |
| Q |
130 |
acaagatgaagagataagaagagagagggtcaccctggcgaagaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagt |
229 |
Q |
| |
|
|||||||||||||||||| || ||||| ||||| || || ||| ||||||| ||||| || || |||| |||||||||||||||||||| |||||||| |
|
|
| T |
13599723 |
acaagatgaagagataaggtgaaagaggatcaccttgacggagatcatgagtaggcttgaattgcggaaacttgttaccattccataaaatagagaaagt |
13599624 |
T |
 |
| Q |
230 |
aga |
232 |
Q |
| |
|
||| |
|
|
| T |
13599623 |
aga |
13599621 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 204 - 494
Target Start/End: Original strand, 32725548 - 32725838
Alignment:
| Q |
204 |
ttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaa |
303 |
Q |
| |
|
||||| |||||||||| ||||| || ||||| |||||||| ||||| || || ||| |||| ||||| || || |||| ||| | || ||| ||| |
|
|
| T |
32725548 |
ttaccgttccataaaatagagaatgtggatgatgtgacacaatgcatgataagcttgatggtgatgtccggaaatccaaactcaaggaggcaagaattaa |
32725647 |
T |
 |
| Q |
304 |
gaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttc |
403 |
Q |
| |
|
|||||||||| | | ||||||||| || || || || || ||||| || || ||| | || ||||||||||| ||||||||||| |||||||| ||||| |
|
|
| T |
32725648 |
gaaaatcccatctgacattatcaaaagctttctccaggtcaagtttgaaagctacatatcccttcttctttttagatcttctcataaagtgaactatttc |
32725747 |
T |
 |
| Q |
404 |
gtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgaga |
494 |
Q |
| |
|
| |||||||||||| |||||| ||||||||| | | |||||||| |||||||| || ||||||| | ||||||||| ||||||||| |
|
|
| T |
32725748 |
ctacaaaacaattgagttgtcataagttcccctattaggcagaaaactgctttggtaagggccaataagattattaagaataggtctgaga |
32725838 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 24990618 - 24990820
Alignment:
| Q |
72 |
ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa |
171 |
Q |
| |
|
|||||||| |||| ||| || |||||||| || || |||||||| ||||| ||||| || | ||||| ||||||| |||||| |||||||| || | | |
|
|
| T |
24990618 |
ggttcccaacttccttggcttacagcattatttatagcgatagaaagcttctccatgcaaagaatgaaaagataaggagagagcgggtcaccttgtctga |
24990717 |
T |
 |
| Q |
172 |
gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc |
271 |
Q |
| |
|
||||||| || ||||| || | || | |||||||| |||||||||| || ||||| || || |||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
24990718 |
gaccatgggtgggcttgaaagggggcattttgttaccgttccataaaatagaaaaagtggaggaggtgacacagtgcatgatgagtttgatggtgatgtc |
24990817 |
T |
 |
| Q |
272 |
tgg |
274 |
Q |
| |
|
||| |
|
|
| T |
24990818 |
tgg |
24990820 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 240 - 538
Target Start/End: Original strand, 27853075 - 27853373
Alignment:
| Q |
240 |
acacagtgcataatgagtttgttggtaatgtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaa |
339 |
Q |
| |
|
||||| |||||||||| ||| | |||||||| |||||| ||||||| || || || | ||||||||||||| || | ||||||||| ||||||||| |
|
|
| T |
27853075 |
acacaatgcataatgaacttggttgtaatgtcagggaagccaaagtcttgaaggcaggatttaagaaaatcccagttaacattatcaaactccttttcaa |
27853174 |
T |
 |
| Q |
340 |
gatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctacc |
439 |
Q |
| |
|
|||| || || |||||| |||| || || ||||| || ||||||||||| || ||||||||||| | ||||||| | ||| ||| || || ||||| |
|
|
| T |
27853175 |
gatcaagcttgaaggccgcaaaaccctttttcttcttcgatcttctcataaaatgaacaatttccggaaaaacaaccgcattatcaaaagtgcctctacc |
27853274 |
T |
 |
| Q |
440 |
atgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgca |
538 |
Q |
| |
|
| |||| ||||| |||||||||| ||||||||| || | ||| || | || |||| ||||||||||| ||||||| ||| || ||||||||||| |
|
|
| T |
27853275 |
aggtaggaaactgttttggtaggggccaataatagtatccaaaataggacgaaggtggttgaccaagactttagtgatgattttataaacaatgttgca |
27853373 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 609
Target Start/End: Original strand, 24894082 - 24894328
Alignment:
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
||||||||| | || ||| | ||||||||||||| |||||| |||||||||||||| || |||| |||||||||||| | ||||| || |||||| | | |
|
|
| T |
24894082 |
cctttcttcctctttgatttcctcatgaagtgaataatttcctgcaaaacaattgagttatcagaagttcccctaccaggcagaaagctgctttggcaag |
24894181 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
| ||||||| | | | || || ||||||||| | || || | ||||| | ||| | ||||| | |||||||| || || ||||||| ||| ||||| |
|
|
| T |
24894182 |
ggccaataagattactgaggataggtctgagacgatgcacaagaactttagggataatcttgtagattatgttgcatagactgatgggtctaaaatcttt |
24894281 |
T |
 |
| Q |
563 |
aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgt |
609 |
Q |
| |
|
|| || ||||| ||||| ||||| |||||||| |||||||| |||| |
|
|
| T |
24894282 |
gaaagtggtgggggggtcgattttcggaatgagtgcaatgagagtgt |
24894328 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 72 - 274
Target Start/End: Original strand, 24893791 - 24893993
Alignment:
| Q |
72 |
ggttcccaccttctttgactgacagcattgttgatggcgatagagagcttttccatacacaagatgaagagataagaagagagagggtcaccctggcgaa |
171 |
Q |
| |
|
|||||||| |||| |||||| ||||| || || || || | || ||||||||||| || | ||||| ||||||| |||||| |||||||| || | | |
|
|
| T |
24893791 |
ggttcccaacttccttgactcacagcgttattaatagcaagggaaagcttttccatgcatagtatgaaaagataaggagagagcgggtcaccttgtctga |
24893890 |
T |
 |
| Q |
172 |
gaccatgagttggcttaaactgtggaagcttgttaccattccataaaactgagaaagtagatgaagtgacacagtgcataatgagtttgttggtaatgtc |
271 |
Q |
| |
|
||||||| || ||||| || | || | ||||||||||||||||| | ||||| || || || |||||||| ||||| ||||| ||| |||| ||||| |
|
|
| T |
24893891 |
gaccatgtgtgggcttgaaagggggcattttgttaccattccataatatggagaatgtggaggaggtgacacaatgcatgatgagcttgatggtgatgtc |
24893990 |
T |
 |
| Q |
272 |
tgg |
274 |
Q |
| |
|
||| |
|
|
| T |
24893991 |
tgg |
24893993 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 86; Significance: 9e-41; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 363 - 616
Target Start/End: Complemental strand, 8871 - 8618
Alignment:
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
||||||||||| |||||||||| |||| |||||| |||||| ||||||||||| | ||||||||| || ||||||||| | || ||||| |||||||| | |
|
|
| T |
8871 |
cctttcttcttcttggatcttcgcatgtagtgaataatttcctgcaaaacaatggcattgtcagtggtgcccctaccaggcaggaaactgctttggtaag |
8772 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgatgagtttgtacacaatgttgcaaaggctaatgggtcgaaagtcttt |
562 |
Q |
| |
|
||||||||||| ||||||| || |||||||| |||| || | || || ||||| | |||||| | ||||| |||||||||||||||| ||||||||| |
|
|
| T |
8771 |
gaccaataatatcattaaggataggtctgaggcggtggacaagaaccttagtgataattttgtagatgatgttacaaaggctaatgggtctaaagtcttt |
8672 |
T |
 |
| Q |
563 |
aaatgttgtgggagggtcaattttgggaatgagggcaatgagggtgtcagatat |
616 |
Q |
| |
|
|| ||| ||||||||||| |||||| || ||||| ||||| || |||||||| |
|
|
| T |
8671 |
gaaggttaagggagggtcaactttggggataagggctatgagtgtatcagatat |
8618 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 5e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 301 - 526
Target Start/End: Complemental strand, 23944984 - 23944759
Alignment:
| Q |
301 |
taagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttcttctttttggatcttctcatgaagtgaacaat |
400 |
Q |
| |
|
|||||||||||||||| | |||||||| | || ||||| || || ||||| |||||||| | | | ||||| || |||||||||||| | |||| ||| |
|
|
| T |
23944984 |
taagaaaatcccaattaacgttatcaaaggatttctcaaggtcaagcttaaacgccacaaatcttgttttcttcttagatcttctcatgtaatgaataat |
23944885 |
T |
 |
| Q |
401 |
ttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataataacattaagaatcggtctgagatggtga |
500 |
Q |
| |
|
||| ||||||||||| ||||| |||| |||||||||||| | ||||| || |||||||| || || |||||| ||||||||| ||||||||| | || |
|
|
| T |
23944884 |
ttcctgcaaaacaatggaattatcagaagttcccctaccaggcagaaagctgctttggtaagggcctataatattattaagaataggtctgagacgctgg |
23944785 |
T |
 |
| Q |
501 |
accaagactttggtgatgagtttgta |
526 |
Q |
| |
|
||||| ||||| || |||| |||||| |
|
|
| T |
23944784 |
accaaaactttagtaatgattttgta |
23944759 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 269 - 473
Target Start/End: Original strand, 23620770 - 23620974
Alignment:
| Q |
269 |
gtctgggaaggcaaagtcatgtagacaatttgtaagaaaatcccaatttatattatcaaatgccttttcaagatccagtttaaaggccacaaaccctttc |
368 |
Q |
| |
|
|||||||||| |||| ||||| ||||| | ||||||||| |||||| | ||||||||| || || ||||| || ||||| || |||||| | ||||| |
|
|
| T |
23620770 |
gtctgggaagccaaaatcatggagacatgatctaagaaaattccaattgacattatcaaaagcattctcaaggtcaagtttgaaagccacatatcctttt |
23620869 |
T |
 |
| Q |
369 |
ttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaa |
468 |
Q |
| |
|
||| ||||| | || | |||||| || |||||||| ||||||||||| || |||||| || || ||||| || ||||||| |||||||||||||||| |
|
|
| T |
23620870 |
ttccttttgaacctccgcatgaaatggacaatttcctgcaaaacaatagagttgtcaaaagtgcctctaccttgcagaaaaccgctttggtagggaccaa |
23620969 |
T |
 |
| Q |
469 |
taata |
473 |
Q |
| |
|
||||| |
|
|
| T |
23620970 |
taata |
23620974 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 373 - 483
Target Start/End: Original strand, 6641269 - 6641379
Alignment:
| Q |
373 |
ttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagggaccaataat |
472 |
Q |
| |
|
||||||||||| |||| || || |||||||| ||||||| |||||| || ||| || ||||||| | |||||||||||||||| ||||| |||||||| |
|
|
| T |
6641269 |
ttttggatcttttcataaaatggacaatttcctgcaaaataattgagttatcataagtgcccctacgaggtagaaaactactttgataggggccaataat |
6641368 |
T |
 |
| Q |
473 |
aacattaagaa |
483 |
Q |
| |
|
| |||||||| |
|
|
| T |
6641369 |
attattaagaa |
6641379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 517
Target Start/End: Complemental strand, 31814549 - 31814395
Alignment:
| Q |
363 |
cctttcttctttttggatcttctcatgaagtgaacaatttcgtgcaaaacaattgaattgtcagttgttcccctaccatgtagaaaactactttggtagg |
462 |
Q |
| |
|
||||||||||||||||| || | ||| || |||| | ||| ||||||||||| | ||| | |||||| ||||||||| | | |||||| |||| ||| |
|
|
| T |
31814549 |
cctttcttctttttggaactgcgcataaaatgaaataattcctgcaaaacaatggcatttttagttgtgcccctaccaggcaaaaaactgatttgataga |
31814450 |
T |
 |
| Q |
463 |
gaccaataataacattaagaatcggtctgagatggtgaaccaagactttggtgat |
517 |
Q |
| |
|
|||||||||||| || ||| || |||||||| ||||||| | |||||||||||| |
|
|
| T |
31814449 |
gaccaataataatatcaaggatgggtctgaggcggtgaacaaggactttggtgat |
31814395 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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