View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8911_low_22 (Length: 684)

Name: NF8911_low_22
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8911_low_22
NF8911_low_22
[»] chr8 (2 HSPs)
chr8 (13-385)||(25588813-25589185)
chr8 (489-682)||(25589289-25589482)
[»] chr5 (2 HSPs)
chr5 (13-385)||(26374028-26374400)
chr5 (489-682)||(26374504-26374697)
[»] chr6 (8 HSPs)
chr6 (14-240)||(14127350-14127576)
chr6 (492-682)||(14126875-14127065)
chr6 (15-204)||(12917333-12917522)
chr6 (244-363)||(14127185-14127304)
chr6 (14-193)||(8758022-8758201)
chr6 (504-657)||(12927507-12927660)
chr6 (277-346)||(12927368-12927437)
chr6 (563-634)||(8758559-8758630)
[»] chr3 (5 HSPs)
chr3 (14-240)||(17918498-17918724)
chr3 (492-665)||(17919018-17919191)
chr3 (14-204)||(15428729-15428919)
chr3 (244-385)||(17918770-17918911)
chr3 (277-346)||(15429010-15429079)
[»] chr2 (3 HSPs)
chr2 (16-239)||(24081380-24081602)
chr2 (557-665)||(24080921-24081029)
chr2 (271-362)||(24081215-24081306)
[»] scaffold0071 (2 HSPs)
scaffold0071 (14-204)||(33319-33509)
scaffold0071 (277-346)||(33159-33228)


Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 25588813 - 25589185
Alignment:
Q  13 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588813 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 25588912  T
Q  113 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25588913 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 25589012  T
Q  213 tagcttcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589013 tagcttcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 25589112  T
Q  313 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589113 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 25589185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 489 - 682
Target Start/End: Original strand, 25589289 - 25589482
Alignment:
Q  489 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25589289 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 25589388  T
Q  589 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||    
T  25589389 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgacgtccttcacattg 25589482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 26374028 - 26374400
Alignment:
Q  13 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374028 ggacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgt 26374127  T
Q  113 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374128 tgaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgt 26374227  T
Q  213 tagcttcaccattcaccttgggtgcatcttcaataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 312  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374228 tagcttcaccattcaccttgggtgcatcttcaatatcacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaattt 26374327  T
Q  313 aacctgttcaagtgcgtattttctagccaacgccaattcttccttctccgaaacagaaaaacctccctcattg 385  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  26374328 aacctgttcaagtgcgtattttctagccaacgccatttcttccttctccaaaacaaaaaaacctccctcattg 26374400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 489 - 682
Target Start/End: Original strand, 26374504 - 26374697
Alignment:
Q  489 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 588  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26374504 caacatcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaa 26374603  T
Q  589 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 682  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| || |||||    
T  26374604 cctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattaagagctttctgaagttttgtgacgtccttcacattg 26374697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 191; Significance: 1e-103; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 14127576 - 14127350
Alignment:
Q  14 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 113  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  14127576 gacatcatgtcttctttaccgggaaaaaataaaatcacattatctccacctctaggtactacacgaacattatcaaagccagcatcaatgattttctgtt 14127477  T
Q  114 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 213  Q
    |||||||||||||||| | ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14127476 gaacaattggaataaattgcccattcagcaatttagccaacgcctctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 14127377  T
Q  214 agcttcaccattcaccttgggtgcatc 240  Q
     ||||||||| ||||||||||||||||    
T  14127376 tgcttcaccaatcaccttgggtgcatc 14127350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 492 - 682
Target Start/End: Complemental strand, 14127065 - 14126875
Alignment:
Q  492 catcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacct 591  Q
    |||| |||||| ||||| |||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| || ||||||||||||||||||||||    
T  14127065 catcagcattatttttcgacttattttttcctcctactgcagccgatttcttaccatcctccaacccattcaacggtacttttttaacctcaccaaacct 14126966  T
Q  592 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttgtgatgtccatctcattg 682  Q
    |||||||| ||||||||| | ||||||||||||||||||||||||||||||||| |||||||| || ||||||| || |||| || |||||    
T  14126965 atcaaagcatgcaacatttgtccaaactttattctgaccaaaataaacattattaagagctttttgtagttttgcgacgtccttcacattg 14126875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 15 - 204
Target Start/End: Original strand, 12917333 - 12917522
Alignment:
Q  15 acatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttg 114  Q
    ||||||| |||||||| ||||| ||||| | || |||||||||||||||||||||||  ||||||| || |||||| ||||||||||||||||| |||||    
T  12917333 acatcatatcttctttgccgggacaaaaaagaaccacattatctccacctctaggtaacacacgaatattatcaaaaccagcatcaatgattttttgttg 12917432  T
Q  115 aacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 204  Q
     ||||| |||||| | ||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |||  |||||||||    
T  12917433 cacaataggaatatagtccccattcagcactcttgcaaacgcccctttacttgcccaaacaacatcttcattatcggaaataaacttgcg 12917522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 244 - 363
Target Start/End: Complemental strand, 14127304 - 14127185
Alignment:
Q  244 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 343  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||    
T  14127304 aatatcaccagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgctcaagtgcgtgttttctaaccaac 14127205  T
Q  344 gccaattcttccttctccga 363  Q
     ||| |||||||||||||||    
T  14127204 accatttcttccttctccga 14127185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 14 - 193
Target Start/End: Original strand, 8758022 - 8758201
Alignment:
Q  14 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 113  Q
    ||||||||||| ||||| || || |||||||||| ||| ||||  || |||||||| |  || || |||| |||||| ||  ||||||| ||||| ||||    
T  8758022 gacatcatgtcgtcttttcctggacaaaataaaaccacgttattgccccctctaggcagcacccggacattatcaaacccgacatcaataattttttgtt 8758121  T
Q  114 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaa 193  Q
    | |||   || ||||| || ||||||| |||| | |||||||| ||||||||||||||||||||||| ||||||||||||    
T  8758122 gcacagaaggtataaattctccattcaacactcttgccaacgcacctttacttgcccaaacaacatcatcattatcagaa 8758201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 504 - 657
Target Start/End: Original strand, 12927507 - 12927660
Alignment:
Q  504 ttttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgc 603  Q
    ||||| |||||||||||||||| ||| | ||||  || ||||||||||||||  | |||||||| || ||  ||||||| |||||||| ||||| |||||    
T  12927507 ttttcgacttattttttcctcccacttctgccgattttttaccatcctccaactccttcaacagctccttcctaacctccccaaacctgtcaaaacgtgc 12927606  T
Q  604 aacattcgcccaaactttattctgaccaaaataaacattattgagagctttctg 657  Q
     | ||||||||| ||| ||| ||| || ||  |||||||||| |||||||||||    
T  12927607 gatattcgcccacactctatactggcctaatgaaacattattaagagctttctg 12927660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 12927368 - 12927437
Alignment:
Q  277 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 346  Q
    ||||||||||||||||||| |||||||||  ||||||||||||||||| || |  |||||||||||||||    
T  12927368 ctccctttcctcctcactaaccttagcatctaatttaacctgttcaagagcctgctttctagccaacgcc 12927437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 563 - 634
Target Start/End: Original strand, 8758559 - 8758630
Alignment:
Q  563 aacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaa 634  Q
    |||| |||||||||||| || |||||||||||||| || |||||||| ||||| ||| ||||| ||||||||    
T  8758559 aacaattcttttttaacttctccaaacctatcaaaacgcgcaacatttgcccacactctattcggaccaaaa 8758630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 14 - 240
Target Start/End: Original strand, 17918498 - 17918724
Alignment:
Q  14 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  17918498 gacatcatgtcttctttaccggagcaaaataaaatcacattatctccacctctaggtactacacgaacattttcaaagccaacatcaatgattttctgtt 17918597  T
Q  114 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgtt 213  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||    
T  17918598 gaacaattggaataaaatccccattcagcactgtagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgatacttgcgcgtgacttt 17918697  T
Q  214 agcttcaccattcaccttgggtgcatc 240  Q
     ||||||||| ||||||||||||||||    
T  17918698 tgcttcaccaatcaccttgggtgcatc 17918724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 492 - 665
Target Start/End: Original strand, 17919018 - 17919191
Alignment:
Q  492 catcggcattaattttcaacttattttttcctcctactgcagccgtattcttaccatcctccaatccattcaacagttcttttttaacctcaccaaacct 591  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||| ||||||||||||||||| |    
T  17919018 catcggcgttaattttcgacttattttttcctcctactgcagccggtttcttaccatcctccaacccattcaacagttctgttttaacctcaccaaactt 17919117  T
Q  592 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttctgaagttttg 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||    
T  17919118 atcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaatattattaagagctttctgtagttttg 17919191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 15428729 - 15428919
Alignment:
Q  14 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 113  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  15428729 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 15428828  T
Q  114 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 204  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  15428829 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 15428919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 17918770 - 17918911
Alignment:
Q  244 aataccacaagctacgccacttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaac 343  Q
    |||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||  |||||||||||||    
T  17918770 aataacaccagctccgccgcttaaccttacttgctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcgcgttttctagccaac 17918869  T
Q  344 gccaattcttccttctccgaaacagaaaaacctccctcattg 385  Q
    |||| |||||||||||||||| ||  || |||||| ||||||    
T  17918870 gccatttcttccttctccgaatcaataatacctccatcattg 17918911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Original strand, 15429010 - 15429079
Alignment:
Q  277 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 346  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  15429010 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 15429079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 24081602 - 24081380
Alignment:
Q  16 catcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgttga 115  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||| ||||||||||  || ||||||| ||| || |||||||||||||||||||||||     
T  24081602 catcatgtcttctttacggggacaaaataaaacctcattatctcctcctctaggtaacacccgaacattatcgaaaccagcatcaatgattttctgttgc 24081503  T
Q  116 acaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcgcgtgacgttag 215  Q
    | ||| |||||||| | | |||||| |||| | ||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||| ||  | |    
T  24081502 ataataggaataaagttctcattcaacactcttgccaac-accctttacttgcccaaacaacatcatcattatcagaatgaaacttgcgcgtaacaattg 24081404  T
Q  216 cttcaccattcaccttgggtgcat 239  Q
    |  ||||||||||||||| |||||    
T  24081403 cgccaccattcaccttggatgcat 24081380  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 557 - 665
Target Start/End: Complemental strand, 24081029 - 24080921
Alignment:
Q  557 ccattcaacagttcttttttaacctcaccaaacctatcaaagcgtgcaacattcgcccaaactttattctgaccaaaataaacattattgagagctttct 656  Q
    ||||| |||| |||||| ||||||||||||||||||||||||| |||||||||  |||| |||||||||||||||||| | |||||||| ||| ||||||    
T  24081029 ccattgaacaattctttcttaacctcaccaaacctatcaaagcatgcaacattttcccacactttattctgaccaaaaaagacattattcagaactttct 24080930  T
Q  657 gaagttttg 665  Q
    | |||||||    
T  24080929 gcagttttg 24080921  T

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Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 271 - 362
Target Start/End: Complemental strand, 24081306 - 24081215
Alignment:
Q  271 tacttgctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgccaattcttccttctccg 362  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| |  |||||||||||| |||  |||||||||||||    
T  24081306 tactttctccctttcctcctcactacccttagcattcaatttaacttgctcaagtgcctgctttctagccaacaccatctcttccttctccg 24081215  T

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Target: scaffold0071 (Bit Score: 91; Significance: 1e-43; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 14 - 204
Target Start/End: Complemental strand, 33509 - 33319
Alignment:
Q  14 gacatcatgtcttctttaccggggcaaaataaaatcacattatctccacctctaggtactacacgaacataatcaaagccagcatcaatgattttctgtt 113  Q
    |||||||| || ||||| ||| | |||||||||| |||||||||||| ||||||||||  || ||||||| |||||| ||||| ||||||||||||||||    
T  33509 gacatcatatcatctttgccgagacaaaataaaaccacattatctcctcctctaggtaacacccgaacattatcaaaaccagcgtcaatgattttctgtt 33410  T
Q  114 gaacaattggaataaaatccccattcagcactttagccaacgcccctttacttgcccaaacaacatcttcattatcagaatgaaacttgcg 204  Q
    | ||||| |||||| | |||||||| |||||| | || |||||||||||||||||||||||||||||||| ||||| |||  |||||||||    
T  33409 gcacaataggaatacagtccccatttagcactcttgcaaacgcccctttacttgcccaaacaacatcttcgttatcggaaacaaacttgcg 33319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 277 - 346
Target Start/End: Complemental strand, 33228 - 33159
Alignment:
Q  277 ctccctttcctcctcactacccttagcattcaatttaacctgttcaagtgcgtattttctagccaacgcc 346  Q
    ||||||||||||||||||  | || ||||| ||||||||||||||||| || |  |||||||||||||||    
T  33228 ctccctttcctcctcactctcattcgcatttaatttaacctgttcaagagcctgctttctagccaacgcc 33159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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