View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_23 (Length: 657)
Name: NF8911_low_23
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-160; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 297 - 642
Target Start/End: Original strand, 11886315 - 11886658
Alignment:
| Q |
297 |
gtggggagtgacatttgtactttcatacattcatcaacatctggttgaattgtcgtcccatttgtacttaatccgaaagaagcacttgagataatataaa |
396 |
Q |
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| T |
11886315 |
gtggggagtgacatttgtactttcatacattcatcaacatctggttgaattgtcccattatttgtacttgatctgaaagaagcacttgagataatataaa |
11886414 |
T |
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| Q |
397 |
gatttgatagacaaatataacaatacttgagcttcatagcccttttgacacaatactagataatatttatttctgatcccttgcagtaaccttaactaag |
496 |
Q |
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| T |
11886415 |
--tttgatagacaaatataactatacttgagcttcatagcccttttgacactatactagataatatttatttctgatcccttgttgtaaccttaactaag |
11886512 |
T |
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| Q |
497 |
gtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatattatttgtggaaattgcattctcaaaattcccttctaccttattttagtct |
596 |
Q |
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| T |
11886513 |
gtgaaacaagggactcttcaaagaagtaaaactactaagaaagcacatattatttgtggaaattgcattctcaaaattcccttctaccttattttagtct |
11886612 |
T |
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| Q |
597 |
tcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
642 |
Q |
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| T |
11886613 |
tcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
11886658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 10 - 268
Target Start/End: Original strand, 11885877 - 11886135
Alignment:
| Q |
10 |
gaagcagagattggagatgtacatggatcttgttgttctcacacggtgggagcaatggttcttgaatgactaggtggataagatagttaaaaaatgtctt |
109 |
Q |
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| T |
11885877 |
gaagcacacattggagatgtacatggatcttgttgttctctcacggtgggagcaatggttcttgaatgactcggtggataagatagttaaaaaatgtctt |
11885976 |
T |
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| Q |
110 |
ggattcacggtgcaacatagaagaggttaggacgagtgatcggggattaaaatgtcgtattggagatgaacaaggtttttatgcttgcattcaaacatat |
209 |
Q |
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| T |
11885977 |
ggattcacggtgcaacatagaagaggttagaacgagcgattggggattagaatgtcgtattggtgatgaacaaggtttttatgctagcattcaaacatat |
11886076 |
T |
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| Q |
210 |
tgcacttttcgcataggactggaattgaaggtttggcattggtggtgcactgtggcgga |
268 |
Q |
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| T |
11886077 |
tgcacttttcgcataggatgggaattgaaggtttggcattggtggtgcattgtggcgga |
11886135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 449 - 642
Target Start/End: Original strand, 11892290 - 11892482
Alignment:
| Q |
449 |
atactagataatatttatttctgatcccttgcagtaaccttaactaaggtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatatta |
548 |
Q |
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||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11892290 |
atactagatgatacttatttctgatcccttgtagcaaccttaactaaggtaaaacaagggactcttcaaagaagtaaaactactaagaaaacacatatta |
11892389 |
T |
|
| Q |
549 |
tttgtggaaattgcattctcaaaattcccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
642 |
Q |
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||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11892390 |
tttttggaaattgcattctc-aaatttccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
11892482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 6e-79
Query Start/End: Original strand, 449 - 642
Target Start/End: Original strand, 11897956 - 11898148
Alignment:
| Q |
449 |
atactagataatatttatttctgatcccttgcagtaaccttaactaaggtgaaacaagggactcttcaaagaagtaaaactactaagaaagcagatatta |
548 |
Q |
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||||||||| ||| ||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||| |
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| T |
11897956 |
atactagatgatacttatttctgatcccttgtagcaaccttaactaaggtaaaacaagggactcttcaaagaagtaaaactactaagaaaacacatatta |
11898055 |
T |
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| Q |
549 |
tttgtggaaattgcattctcaaaattcccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
642 |
Q |
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||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898056 |
tttttggaaattgcattctc-aaatttccttctaccttattttagtcttcagttcaaactgctctccaataagctgtttcaaatttgaaacttc |
11898148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 11892252 - 11892294
Alignment:
| Q |
381 |
cttgagataatataaagatttgatagacaaatataacaatact |
423 |
Q |
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| T |
11892252 |
cttgagataatatatagatttgatagacaaatataactatact |
11892294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 381 - 423
Target Start/End: Original strand, 11897918 - 11897960
Alignment:
| Q |
381 |
cttgagataatataaagatttgatagacaaatataacaatact |
423 |
Q |
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|||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
11897918 |
cttgagataatatatagatttgatagacaaatataactatact |
11897960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 11892209 - 11892179
Alignment:
| Q |
320 |
catacattcatcaacatctggttgaattgtc |
350 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
11892209 |
catacattcatcaacatctggttgaattgtc |
11892179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 320 - 350
Target Start/End: Complemental strand, 11897875 - 11897845
Alignment:
| Q |
320 |
catacattcatcaacatctggttgaattgtc |
350 |
Q |
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| T |
11897875 |
catacattcatcaacatctggttgaattgtc |
11897845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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