View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_25 (Length: 652)
Name: NF8911_low_25
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 44 - 398
Target Start/End: Original strand, 26926339 - 26926686
Alignment:
| Q |
44 |
aattgtcattgcgcacccaaacaataataactcagttttctttaatttaagactattttacctaaaaagttcgaacatcagagcgaaaatgtaccaatag |
143 |
Q |
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| T |
26926339 |
aattgtcattgcgcacccaaacaataataactcagttttctttaatttga----------cctaaaaagttcgaacatcagagtaaaaatggaccaatag |
26926428 |
T |
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| Q |
144 |
atttgcttgttcttatataaattaaactattctttctgacatattacacatgacaacaatatttaatctctttgtaaactact---tcacag--aagtct |
238 |
Q |
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| T |
26926429 |
atttgtttgttcttatataaattaaactattctttctgacatattacacatgacaacaatatttaatctctttgtaaactactacttcacagtgaagtct |
26926528 |
T |
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| Q |
239 |
tcagtcttcacccttgaacttttaccctatagatcaaatttttcacctttactgtgccatatttatctttcataagcatatagaacaaaagtgaccacaa |
338 |
Q |
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| T |
26926529 |
tcagtcttcacccttgaacttttactctatagatcaaatttttcacctttactgtgccatatttatctttcataagcatatagaacaaaagtgaccacaa |
26926628 |
T |
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| Q |
339 |
aaatagtatggaaccgcagaagaa-tgcttacacaccaccttcagtcttgatgaaatagtt |
398 |
Q |
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| T |
26926629 |
aaatagtatggaaccgcagaagaattgcttac---gcaccttcggtcttgatgaaatagtt |
26926686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 392 - 580
Target Start/End: Original strand, 26927891 - 26928087
Alignment:
| Q |
392 |
aatagtttactgcactgttttcagtaaaaactttgaccatttttgccccctaatatggttaaaccat--------aattaaatgctcaaggttctcatat |
483 |
Q |
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| T |
26927891 |
aataatttactacactgttttcggtaaaaactttgaccatttttaccccctaatatggttaaaccataaatccataattaaatgctcaaggttctcatat |
26927990 |
T |
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| Q |
484 |
ttttagaatcgttcaataatttctactcctttatttaccatgccattaattttctatcagtgtgacaacagcaaaaaaggtagatagtattccacta |
580 |
Q |
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| T |
26927991 |
ttttagaatcgttcaataatttctactcctttatttaccatgccattaattttctatcagtgtgacaacagcaaaaaaggtagatagcattccacta |
26928087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 596 - 630
Target Start/End: Original strand, 26928118 - 26928152
Alignment:
| Q |
596 |
tccactgtattaattcataagtttgatgtggtgta |
630 |
Q |
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| T |
26928118 |
tccactatattaattcataagtttgatgtggtgta |
26928152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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