View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_26 (Length: 628)
Name: NF8911_low_26
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 17 - 613
Target Start/End: Complemental strand, 2751551 - 2750960
Alignment:
| Q |
17 |
tatgtttgcactcgcttcggatcaaaatttcccatctttggtaaggtaggtctacttacaagtcttctttgaaagtgcattaatcataatccaaaaagta |
116 |
Q |
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| T |
2751551 |
tatgtttgcactcgcttcggatcaaaatttcccatctttggtaaggtaggtctacttacaagtcttctttgaaagtgcattaatcataatccaaaaagta |
2751452 |
T |
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| Q |
117 |
ggagggtatcccgcaactagtattagcatttgttttgttctgcgatgaattttatggaattgtgatggaatatcgcgtctggacaaaaatttccctgttc |
216 |
Q |
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| T |
2751451 |
ggagggtatcccgcaactagtattagcatttgttttgttctgcgatgaattttatggaattgtgatggaatatcgcgtctggacaaaaatttccctgttc |
2751352 |
T |
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| Q |
217 |
tatatatgtgtgtgtttggacgtggtattctatgtgcaaacacagatccaaacacacacatatatatatagaacagtaggcctaattcctcagagatgta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2751351 |
tatatatgtgtgtgtttggacgtggtattctatgtgcaaacacagatccaaacacacacata-----atagaacagtaggcctaattcctcagagatgta |
2751257 |
T |
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| Q |
317 |
gagtacctgttaattgaccactcttcttccatcagattcagctttgttctcattgccaaggttttaaccctggacatttgattaaagggcctaagctact |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2751256 |
gagtacctgttaattgaccactcttcttccatcagattcagctttgttctcattgccaaggttttaaccctggacatttgattaaagggcctaagctact |
2751157 |
T |
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| Q |
417 |
ataattagtggcaaagaatctactacaaactagaggttgtggatctagtctaggagattaaaatgttgcataactggttatctggttgattgtacaaggt |
516 |
Q |
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| T |
2751156 |
ataattagtggcaaagaatctactacaaactagaggttgtggatctagtctaggagattaaaatgttgcataactggttatctggttgattgtacaaggt |
2751057 |
T |
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| Q |
517 |
gtatgatgtgatgagtactattatgtgttaacttgtgctaaaaatgctttgaagattaataaagacatttagtgtatcatatatctttctctgatgt |
613 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2751056 |
gtatgatgtgatgagtactattatgtgttaacttgtgctaaaaatgctttgaagattaataaagacatttagtgtatcatatatctttctctgatgt |
2750960 |
T |
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