View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8911_low_30 (Length: 588)
Name: NF8911_low_30
Description: NF8911
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8911_low_30 |
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| [»] scaffold0032 (1 HSPs) |
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Alignment Details
Target: scaffold0032 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Complemental strand, 39694 - 39120
Alignment:
| Q |
17 |
atatttaagacaattctgttcggttaagttacccaagttttgaggcggttaatgaagttagccacaaaatttcattaccatttatacataaacatggata |
116 |
Q |
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| T |
39694 |
atatttaagacaattctgttcggttaagttacccaagttttgaggcggttaatgaagttagccacaaaatttcattaccatttatacataaacatggata |
39595 |
T |
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| Q |
117 |
taaataaacaaatagatatatcacaagaatacaaactatttaaaaacttatcttaaatctgatagtagctggcaaaccgagatcacttgattactttaat |
216 |
Q |
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| T |
39594 |
taaataaacaaatagatatatcacaagaatacaaactatttaaaaacttatcttaaatctgatagtagctggcaaaccgagatcacttgattactttaat |
39495 |
T |
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| Q |
217 |
aaaaccgacataaaataagttattaaactccagattagtatcaagtgttctataaaaatatgtctnnnnnnncgtgtactgcaaaaataaaatcatatga |
316 |
Q |
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| T |
39494 |
aaaaccgacataaaataagttattaaactccagattagtatcaagtgttctataaaaatatgtctaaaaaaacgtgtactgcaaaaataaaatcatatga |
39395 |
T |
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| Q |
317 |
tt-atgtaaatataaccccatagatagaggttctgcaatcagaaaactaagtctaactcgat---------nnnnnnnnctaagctaaacgtgtagttgt |
406 |
Q |
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|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39394 |
ttaatgtaaatataaccccatagatagaggttctgtaatcagaaaactaagtctaactcgataaaaaaaaaaaaaaaaactaagctaaacgtgtagttgt |
39295 |
T |
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| Q |
407 |
agtacttagtaatggaagtttccagcaccggaagttctaaaacctacaatcgtttgaaagaactgaaagcctttgaagaaacaaaagccggagttaaagg |
506 |
Q |
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| T |
39294 |
agtacttagtaatggaagtttccagcaccggaagttctaaaacctacaatcgtttgaaagaactgaaagcctttgaagaaacaaaagccggagttaaagg |
39195 |
T |
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| Q |
507 |
tcttattgactccggcatcacgaaaataccaaaaatattcgtgatgccggaagaaatcggcaacaccaacaccaa |
581 |
Q |
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| T |
39194 |
tcttattgactccggcatcacgaaaataccaaaaatattcgtgatgccggaagaaatcggcaacaccaacaccaa |
39120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 434 - 536
Target Start/End: Complemental strand, 10715779 - 10715677
Alignment:
| Q |
434 |
ccggaagttctaaaacctacaatcgtttgaaagaactgaaagcctttgaagaaacaaaagccggagttaaaggtcttattgactccggcatcacgaaaat |
533 |
Q |
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|||||||||| | || ||||||||||||| ||||||| || |||| || ||| | |||||||| |||||||||||| ||||||||||||||| ||| | |
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| T |
10715779 |
ccggaagttcaacaaactacaatcgtttgcaagaactaaagtccttcgatgaatccaaagccggcgttaaaggtctttatgactccggcatcaccaaact |
10715680 |
T |
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| Q |
534 |
acc |
536 |
Q |
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||| |
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| T |
10715679 |
acc |
10715677 |
T |
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